Rroxscaffold_4G00330660

Protein kinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
N/A
Physical Location & Seq
Forward (+)
64371058 .. 64372542
1485 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00330660.1

Sequence Viewer

Length: 705 bp
ATGGATGATGACTGTATGTTCCAGTTGTTTGGGAAGTACTGGGGCATGGCTTTGGCTGTTAAAAACTTAAAATCCTTGCTACCTTTCCATATTTCAATCGCTATGAAGAAGCATATTGGACTGTCGACAATGCAGTATTGTAGGGTGCTGATCATTGCTGTTACAGCCATTGTCTGTGCCATTATCAACTGTTTGAAATATTGTGCAAGTTCTGTTCTAGTTTCTGCCTGGATAATAAGCAGTGACAGTACCAACAGCGTCTCCAACAAAGTAGCAATGGACTTACGAATTGATCAATTTTCAGTAGTTTGTGACTCACAAGTTGAGTTTCCGACAATAAAGTGGTTCCTGAGCAACATGCCAGAAGTGAAGCCTATAACTTTTGCTGCTAAGAAAATTGCAGAACTTACACATAACTATAACTACAACAATTTTAGGTTTAGGTGGTTTTGGAGTAGTATAAAAGAAGGCTTCTCAAAAATGGAATACAAGAGGTTGCCAAGGTCCTTAGCAACAACAATTGATAGGGCCAAGATATTTGAAAGCAGTTTATGGCAGAAGTTGGGACCTTGGGAACAACTCTCCATATGTGATCTAGCTGCAAAAAGGATTTCGGAGCTGCTTGAAGCTCTGGAGGGATCCGCAGAGGCAAAATCTTTTGGTGGAATCAACCACGCTTTCCCATTGTGTTCTGATACAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

234

Amino Acids

26.47

Weight (kDa)

8.73

Isoelectric Point (pI)

36.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 125
AciI CCGC 1 cut(s) 642
AclWI GGATC 2 cut(s) 633, 646
AfaI GTAC 2 cut(s) 38, 250
AgsI TTSAA 4 cut(s) 96, 196, 542, 626
AjnI CCWGG 1 cut(s) 227
AluBI AGCT 3 cut(s) 599, 619, 629
AluI AGCT 3 cut(s) 599, 619, 629
Alw26I GTCTC 1 cut(s) 265
AlwI GGATC 2 cut(s) 633, 646
AoxI GGCC 1 cut(s) 528
ApeKI GCWGC 3 cut(s) 386, 599, 619
AspS9I GGNCC 3 cut(s) 504, 528, 566
AvaII GGWCC 2 cut(s) 504, 566
BamHI GGATCC 1 cut(s) 638
BbvI GCAGC 3 cut(s) 373, 586, 606
BciT130I CCWGG 1 cut(s) 229
BclI TGATCA 2 cut(s) 150, 292
BcoDI GTCTC 1 cut(s) 265
BfaI CTAG 2 cut(s) 218, 596
BisI GCNGC 3 cut(s) 387, 600, 620
BlsI GCNGC 3 cut(s) 388, 601, 621
BmcAI AGTACT 1 cut(s) 38
Bme1390I CCNGG 1 cut(s) 229
Bme18I GGWCC 2 cut(s) 504, 566
BmgT120I GGNCC 3 cut(s) 504, 528, 566
BmiI GGNNCC 3 cut(s) 347, 567, 640
BmrFI CCNGG 1 cut(s) 229
BmrI ACTGGG 1 cut(s) 49
BmuI ACTGGG 1 cut(s) 49
BpmI CTGGAG 1 cut(s) 653
Bpu10I CCTNAGC 2 cut(s) 350, 508
BsaJI CCNNGG 2 cut(s) 500, 569
BsaXI ACNNNNNCTCC 2 cut(s) 245, 275
Bse1I ACTGG 2 cut(s) 22, 44
Bse3DI GCAATG 2 cut(s) 153, 282
BseBI CCWGG 1 cut(s) 229
BseDI CCNNGG 2 cut(s) 500, 569
BseGI GGATG 1 cut(s) 10
BseMI GCAATG 2 cut(s) 153, 282
BseMII CTCAG 1 cut(s) 341
BseNI ACTGG 2 cut(s) 22, 44
BseXI GCAGC 3 cut(s) 373, 586, 606
BshFI GGCC 1 cut(s) 530
BslFI GGGAC 1 cut(s) 579
BsmAI GTCTC 1 cut(s) 265
BsmBI CGTCTC 1 cut(s) 265
BsmFI GGGAC 1 cut(s) 579
BsnI GGCC 1 cut(s) 530
Bsp143I GATC 4 cut(s) 150, 292, 592, 638
BspACI CCGC 1 cut(s) 642
BspANI GGCC 1 cut(s) 530
BspCNI CTCAG 1 cut(s) 342
BspLI GGNNCC 3 cut(s) 347, 567, 640
BspPI GGATC 2 cut(s) 633, 646
BsrDI GCAATG 2 cut(s) 153, 282
BsrI ACTGG 2 cut(s) 22, 44
BssECI CCNNGG 2 cut(s) 500, 569
BssMI GATC 4 cut(s) 150, 292, 592, 638
BssT1I CCWWGG 2 cut(s) 500, 569
Bst2UI CCWGG 1 cut(s) 229
Bst4CI ACNGT 4 cut(s) 14, 123, 191, 248
BstDEI CTNAG 3 cut(s) 350, 390, 508
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 4 cut(s) 153, 295, 595, 641
BstMAI GTCTC 1 cut(s) 265
BstMBI GATC 4 cut(s) 150, 292, 592, 638
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstNI CCWGG 1 cut(s) 229
BstNSI RCATGY 1 cut(s) 361
BstSCI CCNGG 1 cut(s) 227
BstV1I GCAGC 3 cut(s) 373, 586, 606
BstX2I RGATCY 1 cut(s) 638
BstXI CCANNNNNNTGG 1 cut(s) 29
BstYI RGATCY 1 cut(s) 638
BsuRI GGCC 1 cut(s) 530
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 247
BtsIMutI CAGTG 1 cut(s) 247
Cfr13I GGNCC 3 cut(s) 504, 528, 566
CseI GACGC 1 cut(s) 247
Csp6I GTAC 2 cut(s) 37, 249
CviAII CATG 2 cut(s) 46, 358
CviJI RGCY 9 cut(s) 50, 56, 167, 373, 471, 530, 599, 619, 629
CviKI_1 RGCY 9 cut(s) 50, 56, 167, 373, 471, 530, 599, 619, 629
CviQI GTAC 2 cut(s) 37, 249
DdeI CTNAG 3 cut(s) 350, 390, 508
DpnI GATC 4 cut(s) 152, 294, 594, 640
DpnII GATC 4 cut(s) 150, 292, 592, 638
Eco130I CCWWGG 2 cut(s) 500, 569
Eco47I GGWCC 2 cut(s) 504, 566
EcoO109I RGGNCCY 2 cut(s) 504, 566
EcoRII CCWGG 1 cut(s) 227
EcoT14I CCWWGG 2 cut(s) 500, 569
ErhI CCWWGG 2 cut(s) 500, 569
Esp3I CGTCTC 1 cut(s) 265
FaeI CATG 2 cut(s) 49, 361
FaqI GGGAC 1 cut(s) 579
FatI CATG 2 cut(s) 45, 357
FauNDI CATATG 1 cut(s) 587
FbaI TGATCA 2 cut(s) 150, 292
FblI GTMKAC 1 cut(s) 125
Fnu4HI GCNGC 3 cut(s) 387, 600, 620
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 3 cut(s) 387, 600, 620
FspBI CTAG 2 cut(s) 218, 596
GluI GCNGC 3 cut(s) 387, 600, 620
GsuI CTGGAG 1 cut(s) 653
HaeIII GGCC 1 cut(s) 530
HgaI GACGC 1 cut(s) 247
Hin1II CATG 2 cut(s) 49, 361
HincII GTYRAC 1 cut(s) 126
HindII GTYRAC 1 cut(s) 126
HinfI GANTC 2 cut(s) 314, 666
Hpy166II GTNNAC 1 cut(s) 126
Hpy188I TCNGA 3 cut(s) 333, 616, 694
Hpy188III TCNNGA 2 cut(s) 349, 632
Hpy8I GTNNAC 1 cut(s) 126
HpyAV CCTTC 1 cut(s) 461
HpyCH4III ACNGT 4 cut(s) 14, 123, 191, 248
HpyCH4V TGCA 4 cut(s) 133, 206, 401, 602
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpyF3I CTNAG 3 cut(s) 350, 390, 508
Hsp92II CATG 2 cut(s) 49, 361
Ksp22I TGATCA 2 cut(s) 150, 292
Kzo9I GATC 4 cut(s) 150, 292, 592, 638
LmnI GCTCC 1 cut(s) 616
LpnPI CCDG 8 cut(s) 25, 35, 214, 241, 362, 375, 617, 684
Lsp1109I GCAGC 3 cut(s) 373, 586, 606
MaeI CTAG 2 cut(s) 218, 596
MaeIII GTNAC 3 cut(s) 160, 242, 311
MalI GATC 4 cut(s) 152, 294, 594, 640
MboI GATC 4 cut(s) 150, 292, 592, 638
MboII GAAGA 1 cut(s) 118
MfeI CAATTG 1 cut(s) 519
MflI RGATCY 1 cut(s) 638
MluCI AATT 5 cut(s) 288, 296, 396, 430, 519
MlyI GAGTC 1 cut(s) 308
MmeI TCCRAC 2 cut(s) 288, 356
MnlI CCTC 3 cut(s) 486, 628, 640
MseI TTAA 2 cut(s) 60, 68
MspR9I CCNGG 1 cut(s) 229
MunI CAATTG 1 cut(s) 519
MvaI CCWGG 1 cut(s) 229
MwoI GCNNNNNNNGC 1 cut(s) 164
NdeI CATATG 1 cut(s) 587
NdeII GATC 4 cut(s) 150, 292, 592, 638
NlaIII CATG 2 cut(s) 49, 361
NlaIV GGNNCC 3 cut(s) 347, 567, 640
NmuCI GTSAC 2 cut(s) 242, 311
NspI RCATGY 1 cut(s) 361
PfeI GAWTC 1 cut(s) 666
PkrI GCNGC 3 cut(s) 388, 601, 621
PleI GAGTC 1 cut(s) 308
PpsI GAGTC 1 cut(s) 308
PpuMI RGGWCCY 2 cut(s) 504, 566
Psp5II RGGWCCY 2 cut(s) 504, 566
Psp6I CCWGG 1 cut(s) 227
PspGI CCWGG 1 cut(s) 227
PspN4I GGNNCC 3 cut(s) 347, 567, 640
PspPI GGNCC 3 cut(s) 504, 528, 566
PspPPI RGGWCCY 2 cut(s) 504, 566
PsuI RGATCY 1 cut(s) 638
RsaI GTAC 2 cut(s) 38, 250
RsaNI GTAC 2 cut(s) 37, 249
SalI GTCGAC 1 cut(s) 124
SaqAI TTAA 2 cut(s) 60, 68
SatI GCNGC 3 cut(s) 387, 600, 620
Sau3AI GATC 4 cut(s) 150, 292, 592, 638
Sau96I GGNCC 3 cut(s) 504, 528, 566
ScaI AGTACT 1 cut(s) 38
SchI GAGTC 1 cut(s) 308
ScrFI CCNGG 1 cut(s) 229
SinI GGWCC 2 cut(s) 504, 566
Sse9I AATT 5 cut(s) 288, 296, 396, 430, 519
SsiI CCGC 1 cut(s) 642
SspI AATATT 1 cut(s) 200
SspMI CTAG 2 cut(s) 218, 596
StyD4I CCNGG 1 cut(s) 227
StyI CCWWGG 2 cut(s) 500, 569
TaaI ACNGT 4 cut(s) 14, 123, 191, 248
TaqI TCGA 1 cut(s) 125
TasI AATT 5 cut(s) 288, 296, 396, 430, 519
TatI WGTACW 1 cut(s) 36
TfiI GAWTC 1 cut(s) 666
Tru1I TTAA 2 cut(s) 60, 68
Tru9I TTAA 2 cut(s) 60, 68
TscAI CASTG 1 cut(s) 247
TseFI GTSAC 2 cut(s) 242, 311
TseI GCWGC 3 cut(s) 386, 599, 619
Tsp45I GTSAC 2 cut(s) 242, 311
TspDTI ATGAA 1 cut(s) 119
TspRI CASTG 1 cut(s) 247
VpaK11BI GGWCC 2 cut(s) 504, 566
XceI RCATGY 1 cut(s) 361
XmiI GTMKAC 1 cut(s) 125
XspI CTAG 2 cut(s) 218, 596
ZrmI AGTACT 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.