Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

963483 .. 971581

Gene Structure 8099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00333500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGGGCTCTATGGACTACTCCTAAAGGACCTAAACCAAACTAAACCACAAATATTAGGTCCAGGAAACGATCAATTGAAACATGATTGGCATGCAAGGCAGAAAATATGTGTGGATGTGGCAAAAGGTTTAGCTTTTCTCCATGAGGGGTCAACACTGAAAGTGGTACACGGGGACATCAAGGTTGCAAACATACTGCTTGACAGGGACTTCAAAGCAAAAATCTCCAACTTTGGACCATGGCCAAACCTGAGATTTTTAGCCTTCTCCATGGAGCAGAAAATATGTGTGGATGTGGCAAAAGGTTTAGCTTTTCTCCATGAGGGGTCACCACTGAAAGTGTTACACGGGGACATCAAGGTTGCAAACATACTGCTTGACAGGGACTTCAAAGCAAAAATCCCCAACTTTGGATCAGGGCCAAACTTGAGATTTTTAGCCTTGAGTCGAACTTTAAAAGTTCGACCTCTAATCACACATTTCAATTTCAAATGCACAAGTTGGAAGCCCTCTCATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

173

Amino Acids

19.37

Weight (kDa)

9.8

Isoelectric Point (pI)

10.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	27 - 79	1.2e-07	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	32 - 79	7.6e-08	Protein kinase domain
Pkinase	PF00069	93 - 140	5.4e-07	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	421
AcoI	YGGCCR	1 cut(s)	242
AfaI	GTAC	1 cut(s)	168
AfiI	CCNNNNNNNGG	1 cut(s)	410
AgsI	TTSAA	5 cut(s)	79, 214, 391, 484, 490
AjnI	CCWGG	1 cut(s)	61
AluBI	AGCT	2 cut(s)	134, 311
AluI	AGCT	2 cut(s)	134, 311
AlwI	GGATC	1 cut(s)	421
AoxI	GGCC	2 cut(s)	242, 419
ArsI	GACNNNNNNTTYG	2 cut(s)	43, 75
AspS9I	GGNCC	4 cut(s)	28, 59, 236, 419
AsuHPI	GGTGA	1 cut(s)	321
AvaII	GGWCC	3 cut(s)	28, 59, 236
BalI	TGGCCA	1 cut(s)	244
BanII	GRGCYC	1 cut(s)	9
BciT130I	CCWGG	1 cut(s)	63
Bme1390I	CCNGG	1 cut(s)	63
Bme18I	GGWCC	3 cut(s)	28, 59, 236
BmgT120I	GGNCC	4 cut(s)	28, 59, 236, 419
BmrFI	CCNGG	1 cut(s)	63
BpuEI	CTTGAG	2 cut(s)	448, 463
BsaJI	CCNNGG	2 cut(s)	239, 270
Bsc4I	CCNNNNNNNGG	1 cut(s)	410
BseBI	CCWGG	1 cut(s)	63
BseDI	CCNNGG	2 cut(s)	239, 270
BseGI	GGATG	2 cut(s)	121, 298
BseLI	CCNNNNNNNGG	1 cut(s)	410
BseMII	CTCAG	1 cut(s)	242
BshFI	GGCC	2 cut(s)	244, 421
BslFI	GGGAC	4 cut(s)	188, 221, 365, 398
BslI	CCNNNNNNNGG	1 cut(s)	410
BsmFI	GGGAC	4 cut(s)	188, 221, 365, 398
BsnI	GGCC	2 cut(s)	244, 421
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	2 cut(s)	70, 413
Bsp19I	CCATGG	2 cut(s)	239, 270
BspANI	GGCC	2 cut(s)	244, 421
BspCNI	CTCAG	1 cut(s)	243
BspPI	GGATC	1 cut(s)	421
BssECI	CCNNGG	2 cut(s)	239, 270
BssMI	GATC	2 cut(s)	70, 413
BssT1I	CCWWGG	2 cut(s)	239, 270
Bst2UI	CCWGG	1 cut(s)	63
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	1 cut(s)	251
BstDSI	CCRYGG	2 cut(s)	239, 270
BstEII	GGTNACC	1 cut(s)	327
BstF5I	GGATG	2 cut(s)	121, 298
BstKTI	GATC	2 cut(s)	73, 416
BstMBI	GATC	2 cut(s)	70, 413
BstMWI	GCNNNNNNNGC	1 cut(s)	97
BstNI	CCWGG	1 cut(s)	63
BstNSI	RCATGY	1 cut(s)	95
BstPI	GGTNACC	1 cut(s)	327
BstSCI	CCNGG	1 cut(s)	61
BsuRI	GGCC	2 cut(s)	244, 421
BtgI	CCRYGG	2 cut(s)	239, 270
BtsCI	GGATG	2 cut(s)	121, 298
BtsIMutI	CAGTG	2 cut(s)	155, 332
Cac8I	GCNNGC	1 cut(s)	93
Cfr13I	GGNCC	4 cut(s)	28, 59, 236, 419
Csp6I	GTAC	1 cut(s)	167
CviAII	CATG	8 cut(s)	83, 92, 143, 240, 271, 320, 515, 519
CviJI	RGCY	8 cut(s)	7, 134, 244, 263, 311, 421, 440, 508
CviKI_1	RGCY	8 cut(s)	7, 134, 244, 263, 311, 421, 440, 508
CviQI	GTAC	1 cut(s)	167
DdeI	CTNAG	1 cut(s)	251
DpnI	GATC	2 cut(s)	72, 415
DpnII	GATC	2 cut(s)	70, 413
DraI	TTTAAA	1 cut(s)	456
EaeI	YGGCCR	1 cut(s)	242
Eco130I	CCWWGG	2 cut(s)	239, 270
Eco24I	GRGCYC	1 cut(s)	9
Eco47I	GGWCC	3 cut(s)	28, 59, 236
Eco91I	GGTNACC	1 cut(s)	327
EcoO109I	RGGNCCY	1 cut(s)	28
EcoO65I	GGTNACC	1 cut(s)	327
EcoRII	CCWGG	1 cut(s)	61
EcoT14I	CCWWGG	2 cut(s)	239, 270
EcoT22I	ATGCAT	1 cut(s)	520
EcoT38I	GRGCYC	1 cut(s)	9
ErhI	CCWWGG	2 cut(s)	239, 270
FaeI	CATG	8 cut(s)	86, 95, 146, 243, 274, 323, 518, 522
FaqI	GGGAC	4 cut(s)	188, 221, 365, 398
FatI	CATG	8 cut(s)	82, 91, 142, 239, 270, 319, 514, 518
FokI	GGATG	2 cut(s)	128, 305
FriOI	GRGCYC	1 cut(s)	9
HaeIII	GGCC	2 cut(s)	244, 421
Hin1II	CATG	8 cut(s)	86, 95, 146, 243, 274, 323, 518, 522
HincII	GTYRAC	1 cut(s)	153
HindII	GTYRAC	1 cut(s)	153
HinfI	GANTC	1 cut(s)	445
HphI	GGTGA	1 cut(s)	321
Hpy166II	GTNNAC	2 cut(s)	153, 169
Hpy8I	GTNNAC	2 cut(s)	153, 169
HpyAV	CCTTC	1 cut(s)	274
HpyCH4V	TGCA	5 cut(s)	95, 188, 365, 495, 518
HpyF10VI	GCNNNNNNNGC	1 cut(s)	97
HpyF3I	CTNAG	1 cut(s)	251
Hsp92II	CATG	8 cut(s)	86, 95, 146, 243, 274, 323, 518, 522
Kzo9I	GATC	2 cut(s)	70, 413
LmnI	GCTCC	1 cut(s)	274
LpnPI	CCDG	6 cut(s)	48, 75, 190, 263, 367, 402
MaeIII	GTNAC	2 cut(s)	327, 342
MalI	GATC	2 cut(s)	72, 415
MboI	GATC	2 cut(s)	70, 413
MfeI	CAATTG	1 cut(s)	74
MhlI	GDGCHC	1 cut(s)	9
MlsI	TGGCCA	1 cut(s)	244
MluCI	AATT	2 cut(s)	74, 484
MluNI	TGGCCA	1 cut(s)	244
MlyI	GAGTC	1 cut(s)	454
MmeI	TCCRAC	2 cut(s)	252, 482
MnlI	CCTC	4 cut(s)	139, 316, 477, 520
Mox20I	TGGCCA	1 cut(s)	244
Mph1103I	ATGCAT	1 cut(s)	520
MscI	TGGCCA	1 cut(s)	244
MseI	TTAA	1 cut(s)	455
Msp20I	TGGCCA	1 cut(s)	244
MspR9I	CCNGG	1 cut(s)	63
MunI	CAATTG	1 cut(s)	74
MvaI	CCWGG	1 cut(s)	63
MwoI	GCNNNNNNNGC	1 cut(s)	97
NcoI	CCATGG	2 cut(s)	239, 270
NdeII	GATC	2 cut(s)	70, 413
NlaIII	CATG	8 cut(s)	86, 95, 146, 243, 274, 323, 518, 522
NmuCI	GTSAC	1 cut(s)	327
NsiI	ATGCAT	1 cut(s)	520
NspI	RCATGY	1 cut(s)	95
PaeI	GCATGC	1 cut(s)	95
PfoI	TCCNGGA	1 cut(s)	61
PleI	GAGTC	1 cut(s)	453
PpsI	GAGTC	1 cut(s)	453
PpuMI	RGGWCCY	1 cut(s)	28
Psp5II	RGGWCCY	1 cut(s)	28
Psp6I	CCWGG	1 cut(s)	61
PspEI	GGTNACC	1 cut(s)	327
PspGI	CCWGG	1 cut(s)	61
PspPI	GGNCC	4 cut(s)	28, 59, 236, 419
PspPPI	RGGWCCY	1 cut(s)	28
RsaI	GTAC	1 cut(s)	168
RsaNI	GTAC	1 cut(s)	167
SaqAI	TTAA	1 cut(s)	455
Sau3AI	GATC	2 cut(s)	70, 413
Sau96I	GGNCC	4 cut(s)	28, 59, 236, 419
SchI	GAGTC	1 cut(s)	454
ScrFI	CCNGG	1 cut(s)	63
SduI	GDGCHC	1 cut(s)	9
SinI	GGWCC	3 cut(s)	28, 59, 236
SmlI	CTYRAG	2 cut(s)	427, 442
SmoI	CTYRAG	2 cut(s)	427, 442
SphI	GCATGC	1 cut(s)	95
Sse9I	AATT	2 cut(s)	74, 484
SspI	AATATT	1 cut(s)	54
StyD4I	CCNGG	1 cut(s)	61
StyI	CCWWGG	2 cut(s)	239, 270
TaqI	TCGA	2 cut(s)	448, 463
TasI	AATT	2 cut(s)	74, 484
Tru1I	TTAA	1 cut(s)	455
Tru9I	TTAA	1 cut(s)	455
TscAI	CASTG	2 cut(s)	162, 339
TseFI	GTSAC	1 cut(s)	327
Tsp45I	GTSAC	1 cut(s)	327
TspRI	CASTG	2 cut(s)	162, 339
VpaK11BI	GGWCC	3 cut(s)	28, 59, 236
XceI	RCATGY	1 cut(s)	95
Zsp2I	ATGCAT	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.