Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

6643794 .. 6647538

Gene Structure 3745 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00338480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGTGGATGCTGCTGGAGAGAGTTAGATTTACTTTAGATGGTGTTGATTATAATAAAATTGGTGTCAACTTTGAGGCTTTTAAATGGGCAGCCAAACTTTGGCTCTTCACCATTCGGAGTTGCTTGCTTAATCGGTTTTGGAATTTCTTGGAGGCTGACCAAAACCGTATCGAAAGGAAACAGTGCCACTTGTTGGTGTGGAAGGAAGAATGCAGGGACTCATTTGTTGTCCATAGGAGTCACGAAGTCATTAATACAAATCTCTTGATAGATCTAAGTGCCGATGACGTAGATTATGTCTACCAAAGGAGTCCCGGGAAAATCTTTGAGGCCTTTACTCAAATTGGAACTGCTACAATCACGACAAAGAATACCGGTGAAGTGGAAGCATCATATTGCTTAATGTCGATTTCTCAACCTTGGTGGGGACCCGACCACGATATACATCTCGTACCTCGACACTCGAAGCTACGTCACGGTAGTTGGAAGCGGCCAATACCTCTCCCCGGAAGCCACCTTCCCGGCCTTACCAAGTTGCCTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009566 GO:0009567 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0044703 GO:0045026 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0055046 GO:0061024 GO:0061025 GO:0061936 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAP2-GCS1

Protein Analysis

181

Amino Acids

21.16

Weight (kDa)

8.37

Isoelectric Point (pI)

39.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAP2-GCS1	PF10699	2 - 134	9.6e-23	Male gamete fusion factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	51
AccB7I	CCANNNNNTGG	2 cut(s)	99, 193
AccI	GTMKAC	1 cut(s)	300
AciI	CCGC	1 cut(s)	490
AcoI	YGGCCR	1 cut(s)	491
AcsI	RAATTY	1 cut(s)	142
AfaI	GTAC	1 cut(s)	453
AfiI	CCNNNNNNNGG	4 cut(s)	99, 193, 425, 506
AgeI	ACCGGT	1 cut(s)	374
AluBI	AGCT	1 cut(s)	469
AluI	AGCT	1 cut(s)	469
Ama87I	CYCGRG	1 cut(s)	314
AoxI	GGCC	3 cut(s)	330, 491, 523
ApeKI	GCWGC	2 cut(s)	10, 89
ApoI	RAATTY	1 cut(s)	142
AseI	ATTAAT	1 cut(s)	252
AsiGI	ACCGGT	1 cut(s)	374
AspS9I	GGNCC	1 cut(s)	428
AsuC2I	CCSGG	4 cut(s)	315, 316, 507, 522
AsuHPI	GGTGA	2 cut(s)	100, 389
AvaI	CYCGRG	1 cut(s)	314
AvaII	GGWCC	1 cut(s)	428
BbvI	GCAGC	1 cut(s)	101
BccI	CCATC	1 cut(s)	32
BcnI	CCSGG	4 cut(s)	315, 316, 507, 522
BglII	AGATCT	1 cut(s)	271
BisI	GCNGC	3 cut(s)	11, 90, 491
BlsI	GCNGC	3 cut(s)	12, 91, 492
Bme1390I	CCNGG	4 cut(s)	315, 316, 507, 522
Bme18I	GGWCC	1 cut(s)	428
BmeT110I	CYCGRG	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	428
BmiI	GGNNCC	2 cut(s)	429, 430
BmrFI	CCNGG	4 cut(s)	315, 316, 507, 522
BmsI	GCATC	1 cut(s)	398
BpmI	CTGGAG	1 cut(s)	35
BpuMI	CCSGG	4 cut(s)	315, 316, 507, 522
BsaBI	GATNNNNATC	1 cut(s)	444
BsaJI	CCNNGG	3 cut(s)	314, 419, 505
BsaWI	WCCGGW	1 cut(s)	374
Bsc4I	CCNNNNNNNGG	4 cut(s)	99, 193, 425, 506
Bse118I	RCCGGY	1 cut(s)	374
Bse8I	GATNNNNATC	1 cut(s)	444
BseDI	CCNNGG	3 cut(s)	314, 419, 505
BseGI	GGATG	1 cut(s)	12
BseJI	GATNNNNATC	1 cut(s)	444
BseLI	CCNNNNNNNGG	4 cut(s)	99, 193, 425, 506
BseXI	GCAGC	1 cut(s)	101
BshFI	GGCC	3 cut(s)	332, 493, 525
BshTI	ACCGGT	1 cut(s)	374
BsiHKCI	CYCGRG	1 cut(s)	314
BsiSI	CCGG	4 cut(s)	315, 375, 507, 522
BslFI	GGGAC	3 cut(s)	230, 297, 441
BslI	CCNNNNNNNGG	4 cut(s)	99, 193, 425, 506
BsmFI	GGGAC	3 cut(s)	230, 297, 441
BsmI	GAATGC	1 cut(s)	215
BsnI	GGCC	3 cut(s)	332, 493, 525
BsoBI	CYCGRG	1 cut(s)	314
Bsp143I	GATC	1 cut(s)	271
BspACI	CCGC	1 cut(s)	490
BspANI	GGCC	3 cut(s)	332, 493, 525
BspLI	GGNNCC	2 cut(s)	429, 430
BspQI	GCTCTTC	1 cut(s)	110
BsrFI	RCCGGY	1 cut(s)	374
BssAI	RCCGGY	1 cut(s)	374
BssECI	CCNNGG	3 cut(s)	314, 419, 505
BssMI	GATC	1 cut(s)	271
BssT1I	CCWWGG	1 cut(s)	419
Bst4CI	ACNGT	3 cut(s)	167, 183, 479
Bst6I	CTCTTC	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	125
BstDEI	CTNAG	1 cut(s)	275
BstF5I	GGATG	1 cut(s)	12
BstKTI	GATC	1 cut(s)	274
BstMBI	GATC	1 cut(s)	271
BstSCI	CCNGG	4 cut(s)	313, 314, 505, 520
BstV1I	GCAGC	1 cut(s)	101
BstX2I	RGATCY	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	271
BsuRI	GGCC	3 cut(s)	332, 493, 525
BtsCI	GGATG	1 cut(s)	12
BtsIMutI	CAGTG	1 cut(s)	188
Cac8I	GCNNGC	1 cut(s)	125
Cfr10I	RCCGGY	1 cut(s)	374
Cfr13I	GGNCC	1 cut(s)	428
Cfr9I	CCCGGG	1 cut(s)	314
Csp6I	GTAC	1 cut(s)	452
CspAI	ACCGGT	1 cut(s)	374
CspCI	CAANNNNNGTGG	2 cut(s)	404, 439
CviJI	RGCY	9 cut(s)	77, 92, 103, 155, 332, 469, 493, 513, 525
CviKI_1	RGCY	9 cut(s)	77, 92, 103, 155, 332, 469, 493, 513, 525
CviQI	GTAC	1 cut(s)	452
DdeI	CTNAG	1 cut(s)	275
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
DraI	TTTAAA	1 cut(s)	82
EaeI	YGGCCR	1 cut(s)	491
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
Eco130I	CCWWGG	1 cut(s)	419
Eco147I	AGGCCT	1 cut(s)	332
Eco47I	GGWCC	1 cut(s)	428
Eco88I	CYCGRG	1 cut(s)	314
EcoO109I	RGGNCCY	1 cut(s)	428
EcoT14I	CCWWGG	1 cut(s)	419
ErhI	CCWWGG	1 cut(s)	419
FaiI	YATR	6 cut(s)	51, 234, 297, 394, 443, 544
FaqI	GGGAC	3 cut(s)	230, 297, 441
FblI	GTMKAC	1 cut(s)	300
Fnu4HI	GCNGC	3 cut(s)	11, 90, 491
FokI	GGATG	1 cut(s)	19
Fsp4HI	GCNGC	3 cut(s)	11, 90, 491
GluI	GCNGC	3 cut(s)	11, 90, 491
GsuI	CTGGAG	1 cut(s)	35
HaeIII	GGCC	3 cut(s)	332, 493, 525
HapII	CCGG	4 cut(s)	315, 375, 507, 522
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HinfI	GANTC	3 cut(s)	218, 238, 310
HpaII	CCGG	4 cut(s)	315, 375, 507, 522
HphI	GGTGA	2 cut(s)	100, 389
Hpy166II	GTNNAC	2 cut(s)	67, 301
Hpy188I	TCNGA	1 cut(s)	117
Hpy188III	TCNNGA	3 cut(s)	242, 265, 361
Hpy8I	GTNNAC	2 cut(s)	67, 301
HpyAV	CCTTC	2 cut(s)	196, 527
HpyCH4III	ACNGT	3 cut(s)	167, 183, 479
HpyCH4IV	ACGT	2 cut(s)	288, 472
HpyCH4V	TGCA	1 cut(s)	213
HpyF3I	CTNAG	1 cut(s)	275
HpySE526I	ACGT	2 cut(s)	288, 472
KflI	GGGWCCC	1 cut(s)	428
Kzo9I	GATC	1 cut(s)	271
LguI	GCTCTTC	1 cut(s)	110
LpnPI	CCDG	5 cut(s)	199, 328, 388, 520, 535
Lsp1109I	GCAGC	1 cut(s)	101
LweI	GCATC	1 cut(s)	398
MaeII	ACGT	2 cut(s)	288, 472
MaeIII	GTNAC	2 cut(s)	239, 473
MalI	GATC	1 cut(s)	273
MboI	GATC	1 cut(s)	271
MboII	GAAGA	2 cut(s)	97, 218
MflI	RGATCY	1 cut(s)	271
MluCI	AATT	3 cut(s)	57, 142, 342
MlyI	GAGTC	3 cut(s)	212, 247, 319
MmeI	TCCRAC	1 cut(s)	464
MnlI	CCTC	5 cut(s)	67, 145, 322, 465, 510
MseI	TTAA	4 cut(s)	81, 129, 252, 401
MspI	CCGG	4 cut(s)	315, 375, 507, 522
MspR9I	CCNGG	4 cut(s)	315, 316, 507, 522
Mva1269I	GAATGC	1 cut(s)	215
NciI	CCSGG	4 cut(s)	315, 316, 507, 522
NdeII	GATC	1 cut(s)	271
NlaIV	GGNNCC	2 cut(s)	429, 430
NmuCI	GTSAC	2 cut(s)	239, 473
PceI	AGGCCT	1 cut(s)	332
PciSI	GCTCTTC	1 cut(s)	110
PctI	GAATGC	1 cut(s)	215
PflMI	CCANNNNNTGG	2 cut(s)	99, 193
PinAI	ACCGGT	1 cut(s)	374
PkrI	GCNGC	3 cut(s)	12, 91, 492
PleI	GAGTC	3 cut(s)	212, 246, 318
PpsI	GAGTC	3 cut(s)	212, 246, 318
PpuMI	RGGWCCY	1 cut(s)	428
PshBI	ATTAAT	1 cut(s)	252
PsiI	TTATAA	1 cut(s)	51
Psp5II	RGGWCCY	1 cut(s)	428
PspN4I	GGNNCC	2 cut(s)	429, 430
PspPI	GGNCC	1 cut(s)	428
PspPPI	RGGWCCY	1 cut(s)	428
PsuI	RGATCY	1 cut(s)	271
RsaI	GTAC	1 cut(s)	453
RsaNI	GTAC	1 cut(s)	452
SapI	GCTCTTC	1 cut(s)	110
SaqAI	TTAA	4 cut(s)	81, 129, 252, 401
SatI	GCNGC	3 cut(s)	11, 90, 491
Sau3AI	GATC	1 cut(s)	271
Sau96I	GGNCC	1 cut(s)	428
SchI	GAGTC	3 cut(s)	212, 247, 319
ScrFI	CCNGG	4 cut(s)	315, 316, 507, 522
SetI	ASST	7 cut(s)	291, 421, 457, 471, 475, 502, 519
SfaNI	GCATC	1 cut(s)	398
SinI	GGWCC	1 cut(s)	428
SmaI	CCCGGG	1 cut(s)	316
Sse9I	AATT	3 cut(s)	57, 142, 342
SseBI	AGGCCT	1 cut(s)	332
SsiI	CCGC	1 cut(s)	490
StuI	AGGCCT	1 cut(s)	332
StyD4I	CCNGG	4 cut(s)	313, 314, 505, 520
StyI	CCWWGG	1 cut(s)	419
TaaI	ACNGT	3 cut(s)	167, 183, 479
TaiI	ACGT	2 cut(s)	291, 475
TaqI	TCGA	4 cut(s)	171, 407, 457, 464
TasI	AATT	3 cut(s)	57, 142, 342
TauI	GCSGC	1 cut(s)	493
Tru1I	TTAA	4 cut(s)	81, 129, 252, 401
Tru9I	TTAA	4 cut(s)	81, 129, 252, 401
TscAI	CASTG	1 cut(s)	188
TseFI	GTSAC	2 cut(s)	239, 473
TseI	GCWGC	2 cut(s)	10, 89
Tsp45I	GTSAC	2 cut(s)	239, 473
TspMI	CCCGGG	1 cut(s)	314
TspRI	CASTG	1 cut(s)	188
Van91I	CCANNNNNTGG	2 cut(s)	99, 193
VpaK11BI	GGWCC	1 cut(s)	428
VspI	ATTAAT	1 cut(s)	252
XapI	RAATTY	1 cut(s)	142
XmaI	CCCGGG	1 cut(s)	314
XmiI	GTMKAC	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.