Rroxscaffold_5G00350170

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
N/A
Physical Location & Seq
Forward (+)
23872855 .. 23873917
1063 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00350170.1

Sequence Viewer

Length: 399 bp
ATGGAGGTGATTGATGCATCGGTACGGGAAACATGCCGGCCTCATGAAGCTTTAAGGTGTATCCATGTAGGGTTTTTGTGCGTACAAGAGGCTCCACTGATCGACCAACGATGTCTGCTCGTAATTCATATGCTGCAAAGCAACGAAGCCACATCACTTCCACCCTCCAAAGAACTCGCTTTTTCAATACACGATATGAATTCCAATGTTGCCGAATCTTCTTCTCAAACGTCTACTAGTGCTTGTTCCAAGAATGTACTCACAATTAGTTTGCCGAAGCTCGATAAATTAAAGGGGTCTGGACCCCCCCCCCCCCAAGACCGTTACATCCGTGATCCGTCGCTGGCCCAAATAGAAAACAGTCAACATTCAACAATGGAAGCTCAACAGGACGCATAG

Protein Analysis

132

Amino Acids

14.48

Weight (kDa)

5.43

Isoelectric Point (pI)

51.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 233
AclWI GGATC 1 cut(s) 329
AcsI RAATTY 1 cut(s) 199
AfaI GTAC 3 cut(s) 24, 84, 258
AgsI TTSAA 2 cut(s) 186, 372
AhlI ACTAGT 1 cut(s) 236
AluBI AGCT 3 cut(s) 50, 280, 383
AluI AGCT 3 cut(s) 50, 280, 383
AlwI GGATC 1 cut(s) 329
AoxI GGCC 2 cut(s) 38, 345
ApeKI GCWGC 1 cut(s) 133
ApoI RAATTY 1 cut(s) 199
AspS9I GGNCC 2 cut(s) 302, 346
AsuHPI GGTGA 1 cut(s) 19
AvaII GGWCC 1 cut(s) 302
BbvI GCAGC 1 cut(s) 120
BciVI GTATCC 1 cut(s) 71
BcuI ACTAGT 1 cut(s) 236
BfaI CTAG 1 cut(s) 237
BfuI GTATCC 1 cut(s) 71
BisI GCNGC 1 cut(s) 134
BlsI GCNGC 1 cut(s) 135
Bme18I GGWCC 1 cut(s) 302
BmgT120I GGNCC 2 cut(s) 302, 346
BmiI GGNNCC 2 cut(s) 93, 304
BmsI GCATC 2 cut(s) 4, 26
Bse118I RCCGGY 1 cut(s) 36
BseGI GGATG 1 cut(s) 327
BseXI GCAGC 1 cut(s) 120
BshFI GGCC 2 cut(s) 40, 347
BsiSI CCGG 1 cut(s) 37
BsnI GGCC 2 cut(s) 40, 347
Bsp143I GATC 2 cut(s) 99, 334
BspANI GGCC 2 cut(s) 40, 347
BspHI TCATGA 1 cut(s) 43
BspLI GGNNCC 2 cut(s) 93, 304
BspPI GGATC 1 cut(s) 329
BsrFI RCCGGY 1 cut(s) 36
BssAI RCCGGY 1 cut(s) 36
BssMI GATC 2 cut(s) 99, 334
Bst4CI ACNGT 2 cut(s) 323, 362
BstC8I GCNNGC 2 cut(s) 38, 345
BstF5I GGATG 1 cut(s) 327
BstKTI GATC 2 cut(s) 102, 337
BstMBI GATC 2 cut(s) 99, 334
BstNSI RCATGY 1 cut(s) 36
BstV1I GCAGC 1 cut(s) 120
BsuI GTATCC 1 cut(s) 71
BsuRI GGCC 2 cut(s) 40, 347
BtsCI GGATG 1 cut(s) 327
BtsIMutI CAGTG 1 cut(s) 95
Cac8I GCNNGC 2 cut(s) 38, 345
CciI TCATGA 1 cut(s) 43
Cfr10I RCCGGY 1 cut(s) 36
Cfr13I GGNCC 2 cut(s) 302, 346
Csp6I GTAC 3 cut(s) 23, 83, 257
CviAII CATG 3 cut(s) 33, 44, 65
CviJI RGCY 7 cut(s) 40, 50, 92, 149, 280, 347, 383
CviKI_1 RGCY 7 cut(s) 40, 50, 92, 149, 280, 347, 383
CviQI GTAC 3 cut(s) 23, 83, 257
DpnI GATC 2 cut(s) 101, 336
DpnII GATC 2 cut(s) 99, 334
Eco47I GGWCC 1 cut(s) 302
EcoRI GAATTC 1 cut(s) 199
EcoT22I ATGCAT 1 cut(s) 19
FaeI CATG 3 cut(s) 36, 47, 68
FaiI YATR 7 cut(s) 34, 45, 66, 129, 131, 197, 397
FatI CATG 3 cut(s) 32, 43, 64
FauNDI CATATG 1 cut(s) 129
FblI GTMKAC 1 cut(s) 233
Fnu4HI GCNGC 1 cut(s) 134
FokI GGATG 1 cut(s) 314
Fsp4HI GCNGC 1 cut(s) 134
FspBI CTAG 1 cut(s) 237
GluI GCNGC 1 cut(s) 134
HaeIII GGCC 2 cut(s) 40, 347
HapII CCGG 1 cut(s) 37
Hin1II CATG 3 cut(s) 36, 47, 68
HincII GTYRAC 1 cut(s) 365
HindII GTYRAC 1 cut(s) 365
HindIII AAGCTT 1 cut(s) 48
HinfI GANTC 1 cut(s) 215
HpaII CCGG 1 cut(s) 37
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 2 cut(s) 234, 365
Hpy188III TCNNGA 2 cut(s) 44, 300
Hpy8I GTNNAC 2 cut(s) 234, 365
Hpy99I CGWCG 1 cut(s) 343
HpyCH4III ACNGT 2 cut(s) 323, 362
HpyCH4IV ACGT 1 cut(s) 230
HpyCH4V TGCA 2 cut(s) 17, 136
HpySE526I ACGT 1 cut(s) 230
Hsp92II CATG 3 cut(s) 36, 47, 68
KroI GCCGGC 1 cut(s) 36
KroNI GCCGGC 1 cut(s) 38
Kzo9I GATC 2 cut(s) 99, 334
LmnI GCTCC 1 cut(s) 97
LpnPI CCDG 4 cut(s) 50, 285, 329, 374
Lsp1109I GCAGC 1 cut(s) 120
LweI GCATC 2 cut(s) 4, 26
MaeI CTAG 1 cut(s) 237
MaeII ACGT 1 cut(s) 230
MaeIII GTNAC 1 cut(s) 323
MalI GATC 2 cut(s) 101, 336
MboI GATC 2 cut(s) 99, 334
MboII GAAGA 2 cut(s) 210, 213
MluCI AATT 4 cut(s) 123, 199, 264, 287
MnlI CCTC 3 cut(s) 51, 82, 175
Mph1103I ATGCAT 1 cut(s) 19
MroNI GCCGGC 1 cut(s) 36
MseI TTAA 2 cut(s) 53, 290
MspI CCGG 1 cut(s) 37
NaeI GCCGGC 1 cut(s) 38
NdeI CATATG 1 cut(s) 129
NdeII GATC 2 cut(s) 99, 334
NgoMIV GCCGGC 1 cut(s) 36
NlaIII CATG 3 cut(s) 36, 47, 68
NlaIV GGNNCC 2 cut(s) 93, 304
NsiI ATGCAT 1 cut(s) 19
NspI RCATGY 1 cut(s) 36
PagI TCATGA 1 cut(s) 43
PdiI GCCGGC 1 cut(s) 38
PfeI GAWTC 1 cut(s) 215
PkrI GCNGC 1 cut(s) 135
PspN4I GGNNCC 2 cut(s) 93, 304
PspPI GGNCC 2 cut(s) 302, 346
RsaI GTAC 3 cut(s) 24, 84, 258
RsaNI GTAC 3 cut(s) 23, 83, 257
SaqAI TTAA 2 cut(s) 53, 290
SatI GCNGC 1 cut(s) 134
Sau3AI GATC 2 cut(s) 99, 334
Sau96I GGNCC 2 cut(s) 302, 346
SetI ASST 6 cut(s) 9, 52, 59, 233, 282, 385
SfaNI GCATC 2 cut(s) 4, 26
SinI GGWCC 1 cut(s) 302
SpeI ACTAGT 1 cut(s) 236
Sse9I AATT 4 cut(s) 123, 199, 264, 287
SspMI CTAG 1 cut(s) 237
TaaI ACNGT 2 cut(s) 323, 362
TaiI ACGT 1 cut(s) 233
TaqI TCGA 2 cut(s) 102, 282
TasI AATT 4 cut(s) 123, 199, 264, 287
TatI WGTACW 1 cut(s) 256
TfiI GAWTC 1 cut(s) 215
Tru1I TTAA 2 cut(s) 53, 290
Tru9I TTAA 2 cut(s) 53, 290
TscAI CASTG 1 cut(s) 102
TseI GCWGC 1 cut(s) 133
TspDTI ATGAA 3 cut(s) 60, 116, 212
TspGWI ACGGA 2 cut(s) 320, 327
TspRI CASTG 1 cut(s) 102
VpaK11BI GGWCC 1 cut(s) 302
XapI RAATTY 1 cut(s) 199
XceI RCATGY 1 cut(s) 36
XmiI GTMKAC 1 cut(s) 233
XspI CTAG 1 cut(s) 237
Zsp2I ATGCAT 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.