Rroxscaffold_5G00350320

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
N/A
Physical Location & Seq
Reverse (-)
24123325 .. 24140460
17136 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00350320.1

Sequence Viewer

Length: 630 bp
ATGAACTACGGGCCACTTCAAGTTAAAAAATACGGCTATTCGGATGACAAGAAAATGACCAACTCTTTCAAGAAAAAGTTGGGGCAAGAAGGCAATGGCCGGTGCCGTATACATATGTGGCCGGGCAGGGCATTACTCCGTGGATTGTGTCCGGGCACAAGGTGGAGGACAGGGGAATCAACAGAGGCAACTACCTCGGGGAAATGCGAGGGTGTTTCTTTGTTGGTCAGCGAGGTGCTAGGGAAGAAGTCCGCGATTACGCAGTCTTTGTTGGAGGTAGTGTGCGTGGATGAGATCCATGAAATGATTGGGTTATCACTAAGTGGTGTGCATAATTTGGAAGCGATACCTTATGATTCACAAGAAATTTACAAGAGTCCGGAACCGGACGAGGAGCTTGGCTCGCACCGCATCACAAATGAGAAGGACAAAGGAAGTGTAAGGAAGATGATAATAGCGAGCTTGTGGGGCATACAAACTGATCCCTCAAACCGACCAGCAATGAAGGAAGTGATAGAAATGCTGGAAGGAAATGTGGAGTCCTTGAAGATACGACCTAAGCCTTACTTGTCTTCTCCTTCAAAATCCTCGCAAAGGCGATTCTTCTACTACATTGGTATCAATCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase Pkinase_Tyr WAK_assoc

Protein Analysis

209

Amino Acids

23.42

Weight (kDa)

8.95

Isoelectric Point (pI)

43.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 102
AccI GTMKAC 1 cut(s) 109
AccII CGCG 1 cut(s) 254
AccIII TCCGGA 1 cut(s) 379
AciI CCGC 2 cut(s) 252, 409
AclWI GGATC 2 cut(s) 289, 476
AcoI YGGCCR 2 cut(s) 97, 119
AcsI RAATTY 1 cut(s) 366
AdeI CACNNNGTG 2 cut(s) 162, 323
AfiI CCNNNNNNNGG 1 cut(s) 594
AgsI TTSAA 4 cut(s) 20, 70, 547, 582
AluBI AGCT 2 cut(s) 397, 462
AluI AGCT 2 cut(s) 397, 462
AlwI GGATC 2 cut(s) 289, 476
Ama87I CYCGRG 1 cut(s) 196
Aor13HI TCCGGA 1 cut(s) 379
AoxI GGCC 3 cut(s) 11, 97, 119
ApoI RAATTY 1 cut(s) 366
AspS9I GGNCC 1 cut(s) 11
AsuC2I CCSGG 2 cut(s) 123, 153
AvaI CYCGRG 1 cut(s) 196
BaeGI GKGCMC 1 cut(s) 158
BaeI ACNNNNGTAYC 1 cut(s) 601
BanI GGYRCC 1 cut(s) 102
BbsI GAAGAC 1 cut(s) 564
BceAI ACGGC 2 cut(s) 49, 90
BcgI CGANNNNNNTGC 2 cut(s) 177, 211
BcnI CCSGG 2 cut(s) 123, 153
BfaI CTAG 1 cut(s) 239
Bme1390I CCNGG 2 cut(s) 123, 153
BmeT110I CYCGRG 1 cut(s) 196
BmgT120I GGNCC 1 cut(s) 11
BmiI GGNNCC 2 cut(s) 104, 384
BmrFI CCNGG 2 cut(s) 123, 153
BmsI GCATC 1 cut(s) 420
BpiI GAAGAC 1 cut(s) 564
BplI GAGNNNNNCTC 2 cut(s) 386, 418
Bpu10I CCTNAGC 1 cut(s) 558
BpuMI CCSGG 2 cut(s) 123, 153
BsaJI CCNNGG 2 cut(s) 139, 195
BsaWI WCCGGW 2 cut(s) 379, 385
BsaXI ACNNNNNCTCC 2 cut(s) 266, 296
Bsc4I CCNNNNNNNGG 1 cut(s) 594
Bse118I RCCGGY 1 cut(s) 99
Bse3DI GCAATG 2 cut(s) 100, 507
BseAI TCCGGA 1 cut(s) 379
BseDI CCNNGG 2 cut(s) 139, 195
BseGI GGATG 2 cut(s) 49, 295
BseLI CCNNNNNNNGG 1 cut(s) 594
BseMI GCAATG 2 cut(s) 100, 507
BseRI GAGGAG 1 cut(s) 407
BseSI GKGCMC 1 cut(s) 158
Bsh1236I CGCG 1 cut(s) 254
BshFI GGCC 3 cut(s) 13, 99, 121
BshNI GGYRCC 1 cut(s) 102
BsiHKCI CYCGRG 1 cut(s) 196
BsiSI CCGG 5 cut(s) 100, 122, 152, 380, 386
BslI CCNNNNNNNGG 1 cut(s) 594
BsnI GGCC 3 cut(s) 13, 99, 121
BsoBI CYCGRG 1 cut(s) 196
Bsp1286I GDGCHC 1 cut(s) 158
Bsp13I TCCGGA 1 cut(s) 379
Bsp143I GATC 2 cut(s) 294, 481
BspACI CCGC 2 cut(s) 252, 409
BspANI GGCC 3 cut(s) 13, 99, 121
BspEI TCCGGA 1 cut(s) 379
BspFNI CGCG 1 cut(s) 254
BspLI GGNNCC 2 cut(s) 104, 384
BspPI GGATC 2 cut(s) 289, 476
BspT107I GGYRCC 1 cut(s) 102
BsrDI GCAATG 2 cut(s) 100, 507
BsrFI RCCGGY 1 cut(s) 99
BssAI RCCGGY 1 cut(s) 99
BssECI CCNNGG 2 cut(s) 139, 195
BssMI GATC 2 cut(s) 294, 481
BssNAI GTATAC 1 cut(s) 110
Bst1107I GTATAC 1 cut(s) 110
BstC8I GCNNGC 2 cut(s) 404, 460
BstDEI CTNAG 2 cut(s) 320, 558
BstDSI CCRYGG 1 cut(s) 139
BstENI CCTNNNNNAGG 1 cut(s) 592
BstF5I GGATG 2 cut(s) 49, 295
BstFNI CGCG 1 cut(s) 254
BstKTI GATC 2 cut(s) 297, 484
BstMBI GATC 2 cut(s) 294, 481
BstMWI GCNNNNNNNGC 3 cut(s) 403, 408, 468
BstSCI CCNGG 2 cut(s) 121, 151
BstSLI GKGCMC 1 cut(s) 158
BstUI CGCG 1 cut(s) 254
BstV2I GAAGAC 1 cut(s) 564
BstX2I RGATCY 1 cut(s) 294
BstYI RGATCY 1 cut(s) 294
BstZ17I GTATAC 1 cut(s) 110
BsuRI GGCC 3 cut(s) 13, 99, 121
BtgI CCRYGG 1 cut(s) 139
BtsCI GGATG 2 cut(s) 49, 295
Cac8I GCNNGC 2 cut(s) 404, 460
Cfr10I RCCGGY 1 cut(s) 99
Cfr13I GGNCC 1 cut(s) 11
CviAII CATG 1 cut(s) 299
CviJI RGCY 8 cut(s) 13, 36, 99, 121, 397, 402, 462, 562
CviKI_1 RGCY 8 cut(s) 13, 36, 99, 121, 397, 402, 462, 562
DdeI CTNAG 2 cut(s) 320, 558
DpnI GATC 2 cut(s) 296, 483
DpnII GATC 2 cut(s) 294, 481
DraIII CACNNNGTG 2 cut(s) 162, 323
EaeI YGGCCR 2 cut(s) 97, 119
Eco88I CYCGRG 1 cut(s) 196
EcoNI CCTNNNNNAGG 1 cut(s) 592
FaeI CATG 1 cut(s) 302
FaiI YATR 8 cut(s) 110, 114, 116, 300, 333, 354, 473, 628
FalI AAGNNNNNCTT 2 cut(s) 551, 583
FatI CATG 1 cut(s) 298
FauNDI CATATG 1 cut(s) 114
FblI GTMKAC 1 cut(s) 109
FokI GGATG 2 cut(s) 56, 302
FspBI CTAG 1 cut(s) 239
HaeIII GGCC 3 cut(s) 13, 99, 121
HapII CCGG 5 cut(s) 100, 122, 152, 380, 386
Hin1II CATG 1 cut(s) 302
HinfI GANTC 5 cut(s) 176, 356, 376, 539, 600
HpaII CCGG 5 cut(s) 100, 122, 152, 380, 386
Hpy166II GTNNAC 1 cut(s) 110
Hpy188I TCNGA 1 cut(s) 43
Hpy188III TCNNGA 2 cut(s) 70, 380
Hpy8I GTNNAC 1 cut(s) 110
HpyAV CCTTC 5 cut(s) 83, 418, 499, 521, 588
HpyCH4V TGCA 1 cut(s) 331
HpyF10VI GCNNNNNNNGC 3 cut(s) 403, 408, 468
HpyF3I CTNAG 2 cut(s) 320, 558
Hsp92II CATG 1 cut(s) 302
Kpn2I TCCGGA 1 cut(s) 379
Kzo9I GATC 2 cut(s) 294, 481
LmnI GCTCC 1 cut(s) 394
LpnPI CCDG 9 cut(s) 112, 113, 135, 156, 165, 393, 399, 509, 510
LweI GCATC 1 cut(s) 420
MaeI CTAG 1 cut(s) 239
MalI GATC 2 cut(s) 296, 483
MboI GATC 2 cut(s) 294, 481
MboII GAAGA 5 cut(s) 256, 457, 559, 564, 595
MflI RGATCY 1 cut(s) 294
MhlI GDGCHC 1 cut(s) 158
MluCI AATT 2 cut(s) 334, 366
MlyI GAGTC 2 cut(s) 385, 548
MmeI TCCRAC 1 cut(s) 252
MnlI CCTC 9 cut(s) 159, 178, 202, 205, 226, 268, 385, 496, 598
MroI TCCGGA 1 cut(s) 379
MseI TTAA 1 cut(s) 24
MspI CCGG 5 cut(s) 100, 122, 152, 380, 386
MspR9I CCNGG 2 cut(s) 123, 153
MvnI CGCG 1 cut(s) 254
MwoI GCNNNNNNNGC 3 cut(s) 403, 408, 468
NciI CCSGG 2 cut(s) 123, 153
NdeI CATATG 1 cut(s) 114
NdeII GATC 2 cut(s) 294, 481
NlaIII CATG 1 cut(s) 302
NlaIV GGNNCC 2 cut(s) 104, 384
PfeI GAWTC 3 cut(s) 176, 356, 600
PleI GAGTC 2 cut(s) 384, 547
PpsI GAGTC 2 cut(s) 384, 547
PspN4I GGNNCC 2 cut(s) 104, 384
PspPI GGNCC 1 cut(s) 11
PsuI RGATCY 1 cut(s) 294
SaqAI TTAA 1 cut(s) 24
Sau3AI GATC 2 cut(s) 294, 481
Sau96I GGNCC 1 cut(s) 11
SchI GAGTC 2 cut(s) 385, 548
ScrFI CCNGG 2 cut(s) 123, 153
SduI GDGCHC 1 cut(s) 158
SetI ASST 8 cut(s) 164, 197, 237, 279, 352, 399, 464, 559
SfaNI GCATC 1 cut(s) 420
Sse9I AATT 2 cut(s) 334, 366
SsiI CCGC 2 cut(s) 252, 409
SspMI CTAG 1 cut(s) 239
StyD4I CCNGG 2 cut(s) 121, 151
TasI AATT 2 cut(s) 334, 366
TfiI GAWTC 3 cut(s) 176, 356, 600
Tru1I TTAA 1 cut(s) 24
Tru9I TTAA 1 cut(s) 24
TspDTI ATGAA 3 cut(s) 17, 315, 518
TspGWI ACGGA 1 cut(s) 128
XagI CCTNNNNNAGG 1 cut(s) 592
XapI RAATTY 1 cut(s) 366
XcmI CCANNNNNNNNNTGG 1 cut(s) 305
XmiI GTMKAC 1 cut(s) 109
XspI CTAG 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.