Rroxscaffold_5G00352010

disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
N/A
Physical Location & Seq
Reverse (-)
28806869 .. 28826486
19618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00352010.1

Sequence Viewer

Length: 552 bp
ATGGATCTTGAGATTGATAATTTGCGAAATTTAGGAGGATTGGCTTCGATACCCGATGGGGTAGAAGATGTTTATCCTCCGGTACCCAATGGGGTAGGGAGCTTGTCGTCGATACCCGATGGGGTAGAAGATGTTTATCCTCCGGTACCCAATGGGGTAGGGAGCTTGTCGTCGATACCCGATGGGTCCTTCGATGTCAACCGTCCCGTATTTGTAGAGGCGGATGGACAGCTAGCTTTGCCCGGGGTGGTATCTAATGTGACGTCCGCCATGGCGGGCGTGAACCAGTGCCCATGGCGTAGTACACGGGAGTACCGATGGGCTCGGGGGCTAGTGAAGGAAAGAGAGATACCAATTTCACCAGTGCGAGACAATAGAGAGGGTGGAGATGACGATGCTTGTTGGGGTTTCTCGCTAAAGTTTGAGGTGAGACCGGTTTCGGAGATCAAGAAAGAAATGGAGGAGTTCGCTGGAAACCTTGAAGCTATTCGAGCTGTGCTTGAAGATGCAGAGCAGAGGCAAGTGAAGGATGCCGCCGTCGAAACTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

183

Amino Acids

19.79

Weight (kDa)

4.33

Isoelectric Point (pI)

42.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 142 - 182 2.2e-06 Rx N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 266
Acc65I GGTACC 2 cut(s) 82, 145
AccB1I GGYRCC 2 cut(s) 82, 145
AciI CCGC 4 cut(s) 221, 267, 275, 534
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 1 cut(s) 28
AcyI GRCGYC 1 cut(s) 263
AfaI GTAC 4 cut(s) 84, 147, 304, 314
AgeI ACCGGT 1 cut(s) 433
AgsI TTSAA 2 cut(s) 482, 503
AluBI AGCT 6 cut(s) 102, 165, 232, 236, 485, 494
AluI AGCT 6 cut(s) 102, 165, 232, 236, 485, 494
Alw26I GTCTC 2 cut(s) 363, 424
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 2 cut(s) 242, 324
ApoI RAATTY 1 cut(s) 28
AsiGI ACCGGT 1 cut(s) 433
Asp700I GAANNNNTTC 1 cut(s) 486
Asp718I GGTACC 2 cut(s) 82, 145
AspS9I GGNCC 1 cut(s) 186
AsuC2I CCSGG 2 cut(s) 243, 244
AsuHPI GGTGA 2 cut(s) 351, 439
AsuNHI GCTAGC 1 cut(s) 232
AvaI CYCGRG 2 cut(s) 242, 324
AvaII GGWCC 1 cut(s) 186
BaeGI GKGCMC 1 cut(s) 293
BaeI ACNNNNGTAYC 2 cut(s) 296, 329
BanI GGYRCC 2 cut(s) 82, 145
BanII GRGCYC 1 cut(s) 325
BccI CCATC 5 cut(s) 50, 113, 176, 218, 312
BceAI ACGGC 1 cut(s) 521
BcnI CCSGG 2 cut(s) 243, 244
BcoDI GTCTC 2 cut(s) 363, 424
BfaI CTAG 2 cut(s) 233, 332
BisI GCNGC 1 cut(s) 534
BlsI GCNGC 1 cut(s) 535
Bme1390I CCNGG 2 cut(s) 243, 244
Bme18I GGWCC 1 cut(s) 186
BmeT110I CYCGRG 2 cut(s) 242, 324
BmgT120I GGNCC 1 cut(s) 186
BmiI GGNNCC 3 cut(s) 84, 147, 187
BmrFI CCNGG 2 cut(s) 243, 244
BmsI GCATC 3 cut(s) 385, 496, 520
BmtI GCTAGC 1 cut(s) 236
BpuEI CTTGAG 1 cut(s) 29
BpuMI CCSGG 2 cut(s) 243, 244
BsaBI GATNNNNATC 2 cut(s) 72, 135
BsaHI GRCGYC 1 cut(s) 263
BsaI GGTCTC 1 cut(s) 424
BsaJI CCNNGG 4 cut(s) 242, 243, 270, 293
BsaWI WCCGGW 3 cut(s) 79, 142, 433
Bse118I RCCGGY 1 cut(s) 433
Bse1I ACTGG 2 cut(s) 286, 362
Bse8I GATNNNNATC 2 cut(s) 72, 135
BseDI CCNNGG 4 cut(s) 242, 243, 270, 293
BseGI GGATG 2 cut(s) 229, 535
BseJI GATNNNNATC 2 cut(s) 72, 135
BseNI ACTGG 2 cut(s) 286, 362
BseRI GAGGAG 1 cut(s) 476
BseSI GKGCMC 1 cut(s) 293
BshNI GGYRCC 2 cut(s) 82, 145
BshTI ACCGGT 1 cut(s) 433
BsiHKCI CYCGRG 2 cut(s) 242, 324
BsiSI CCGG 4 cut(s) 80, 143, 243, 434
BslFI GGGAC 1 cut(s) 189
BsmAI GTCTC 2 cut(s) 363, 424
BsmFI GGGAC 1 cut(s) 189
Bso31I GGTCTC 1 cut(s) 424
BsoBI CYCGRG 2 cut(s) 242, 324
Bsp1286I GDGCHC 2 cut(s) 293, 325
Bsp143I GATC 2 cut(s) 4, 444
Bsp19I CCATGG 2 cut(s) 270, 293
BspACI CCGC 4 cut(s) 221, 267, 275, 534
BspLI GGNNCC 3 cut(s) 84, 147, 187
BspOI GCTAGC 1 cut(s) 236
BspPI GGATC 1 cut(s) 12
BspT107I GGYRCC 2 cut(s) 82, 145
BspTNI GGTCTC 1 cut(s) 424
BsrFI RCCGGY 1 cut(s) 433
BsrI ACTGG 2 cut(s) 286, 362
BssAI RCCGGY 1 cut(s) 433
BssECI CCNNGG 4 cut(s) 242, 243, 270, 293
BssMI GATC 2 cut(s) 4, 444
BssNI GRCGYC 1 cut(s) 263
BssT1I CCWWGG 2 cut(s) 270, 293
Bst4CI ACNGT 2 cut(s) 203, 547
BstACI GRCGYC 1 cut(s) 263
BstC8I GCNNGC 2 cut(s) 234, 277
BstDSI CCRYGG 2 cut(s) 270, 293
BstF5I GGATG 2 cut(s) 229, 535
BstKTI GATC 2 cut(s) 7, 447
BstMAI GTCTC 2 cut(s) 363, 424
BstMBI GATC 2 cut(s) 4, 444
BstMWI GCNNNNNNNGC 2 cut(s) 238, 491
BstSCI CCNGG 2 cut(s) 241, 242
BstSLI GKGCMC 1 cut(s) 293
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BtgI CCRYGG 2 cut(s) 270, 293
BtsCI GGATG 2 cut(s) 229, 535
BtsIMutI CAGTG 2 cut(s) 293, 369
Cac8I GCNNGC 2 cut(s) 234, 277
Cfr10I RCCGGY 1 cut(s) 433
Cfr13I GGNCC 1 cut(s) 186
Cfr9I CCCGGG 1 cut(s) 242
Csp6I GTAC 4 cut(s) 83, 146, 303, 313
CspAI ACCGGT 1 cut(s) 433
CviAII CATG 2 cut(s) 271, 294
CviJI RGCY 9 cut(s) 44, 102, 165, 232, 236, 323, 331, 485, 494
CviKI_1 RGCY 9 cut(s) 44, 102, 165, 232, 236, 323, 331, 485, 494
CviQI GTAC 4 cut(s) 83, 146, 303, 313
DpnI GATC 2 cut(s) 6, 446
DpnII GATC 2 cut(s) 4, 444
EciI GGCGGA 2 cut(s) 236, 256
Eco130I CCWWGG 2 cut(s) 270, 293
Eco24I GRGCYC 1 cut(s) 325
Eco31I GGTCTC 1 cut(s) 424
Eco47I GGWCC 1 cut(s) 186
Eco88I CYCGRG 2 cut(s) 242, 324
EcoO109I RGGNCCY 1 cut(s) 186
EcoT14I CCWWGG 2 cut(s) 270, 293
EcoT38I GRGCYC 1 cut(s) 325
ErhI CCWWGG 2 cut(s) 270, 293
FaeI CATG 2 cut(s) 274, 297
FaiI YATR 2 cut(s) 272, 295
FaqI GGGAC 1 cut(s) 189
FatI CATG 2 cut(s) 270, 293
FauI CCCGC 1 cut(s) 268
Fnu4HI GCNGC 1 cut(s) 534
FokI GGATG 2 cut(s) 236, 542
FriOI GRGCYC 1 cut(s) 325
Fsp4HI GCNGC 1 cut(s) 534
FspBI CTAG 2 cut(s) 233, 332
GluI GCNGC 1 cut(s) 534
HapII CCGG 4 cut(s) 80, 143, 243, 434
Hin1I GRCGYC 1 cut(s) 263
Hin1II CATG 2 cut(s) 274, 297
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HpaII CCGG 4 cut(s) 80, 143, 243, 434
HphI GGTGA 2 cut(s) 351, 439
Hpy166II GTNNAC 3 cut(s) 199, 283, 305
Hpy188I TCNGA 1 cut(s) 442
Hpy188III TCNNGA 2 cut(s) 8, 448
Hpy8I GTNNAC 3 cut(s) 199, 283, 305
Hpy99I CGWCG 3 cut(s) 112, 175, 542
HpyAV CCTTC 3 cut(s) 199, 331, 520
HpyCH4III ACNGT 2 cut(s) 203, 547
HpyCH4IV ACGT 1 cut(s) 263
HpyCH4V TGCA 1 cut(s) 509
HpyF10VI GCNNNNNNNGC 2 cut(s) 238, 491
HpySE526I ACGT 1 cut(s) 263
Hsp92I GRCGYC 1 cut(s) 263
Hsp92II CATG 2 cut(s) 274, 297
KpnI GGTACC 2 cut(s) 86, 149
Kzo9I GATC 2 cut(s) 4, 444
LmnI GCTCC 2 cut(s) 99, 162
LpnPI CCDG 7 cut(s) 93, 156, 256, 299, 375, 447, 456
LweI GCATC 3 cut(s) 385, 496, 520
MaeI CTAG 2 cut(s) 233, 332
MaeII ACGT 1 cut(s) 263
MaeIII GTNAC 1 cut(s) 259
MalI GATC 2 cut(s) 6, 446
MboI GATC 2 cut(s) 4, 444
MboII GAAGA 3 cut(s) 77, 140, 515
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 293, 325
MluCI AATT 3 cut(s) 19, 28, 354
MnlI CCTC 8 cut(s) 29, 87, 150, 211, 373, 418, 454, 510
MroXI GAANNNNTTC 1 cut(s) 486
MspI CCGG 4 cut(s) 80, 143, 243, 434
MspR9I CCNGG 2 cut(s) 243, 244
MwoI GCNNNNNNNGC 2 cut(s) 238, 491
NciI CCSGG 2 cut(s) 243, 244
NcoI CCATGG 2 cut(s) 270, 293
NdeII GATC 2 cut(s) 4, 444
NheI GCTAGC 1 cut(s) 232
NlaIII CATG 2 cut(s) 274, 297
NlaIV GGNNCC 3 cut(s) 84, 147, 187
NmuCI GTSAC 1 cut(s) 259
PcsI WCGNNNNNNNCGW 1 cut(s) 313
PdmI GAANNNNTTC 1 cut(s) 486
PinAI ACCGGT 1 cut(s) 433
PkrI GCNGC 1 cut(s) 535
PpuMI RGGWCCY 1 cut(s) 186
Psp5II RGGWCCY 1 cut(s) 186
PspN4I GGNNCC 3 cut(s) 84, 147, 187
PspPI GGNCC 1 cut(s) 186
PspPPI RGGWCCY 1 cut(s) 186
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 4 cut(s) 84, 147, 304, 314
RsaNI GTAC 4 cut(s) 83, 146, 303, 313
SatI GCNGC 1 cut(s) 534
Sau3AI GATC 2 cut(s) 4, 444
Sau96I GGNCC 1 cut(s) 186
ScrFI CCNGG 2 cut(s) 243, 244
SduI GDGCHC 2 cut(s) 293, 325
SetI ASST 9 cut(s) 104, 167, 234, 238, 266, 429, 480, 487, 496
SfaNI GCATC 3 cut(s) 385, 496, 520
SinI GGWCC 1 cut(s) 186
SmaI CCCGGG 1 cut(s) 244
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
Sse9I AATT 3 cut(s) 19, 28, 354
SsiI CCGC 4 cut(s) 221, 267, 275, 534
SspMI CTAG 2 cut(s) 233, 332
StyD4I CCNGG 2 cut(s) 241, 242
StyI CCWWGG 2 cut(s) 270, 293
TaaI ACNGT 2 cut(s) 203, 547
TaiI ACGT 1 cut(s) 266
TaqI TCGA 6 cut(s) 47, 110, 173, 192, 490, 540
TasI AATT 3 cut(s) 19, 28, 354
TatI WGTACW 1 cut(s) 302
TauI GCSGC 1 cut(s) 536
TscAI CASTG 2 cut(s) 293, 369
TseFI GTSAC 1 cut(s) 259
Tsp45I GTSAC 1 cut(s) 259
TspMI CCCGGG 1 cut(s) 242
TspRI CASTG 2 cut(s) 293, 369
VpaK11BI GGWCC 1 cut(s) 186
XapI RAATTY 1 cut(s) 28
XmaI CCCGGG 1 cut(s) 242
XmnI GAANNNNTTC 1 cut(s) 486
XspI CTAG 2 cut(s) 233, 332
ZraI GACGTC 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.