Rroxscaffold_5G00353630

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
N/A
Physical Location & Seq
Reverse (-)
31494677 .. 31503318
8642 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00353630.1

Sequence Viewer

Length: 303 bp
ATGAATCGTGAATTGATGGGAACGGAACTATTGGTATTGAGGCTGAGAGGCTTTATAGTCTTCACAAGCATTTCAAGTTCTTTCATTATTCTCAACTATGCTGAAAGCAAGTGGGGGACCGTTTTGGCTCTTATAAATGCAGCTGAGAGAGGCTTTATAGTCTTCACAAGCATTTCAAGTTCTTTCATTATTCTCAACTATGCTGAAAGCATTTGCCAACTTCCCCTTGACGCCCTTACGCCCCTCAGAGACGGCGACGTTTTCGTCTCTAGCAGGAAAAACTTTGCACTAGGGAAGTTATAG

Protein Analysis

100

Amino Acids

11.09

Weight (kDa)

7.9

Isoelectric Point (pI)

33.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 134
AasI GACNNNNNNGTC 1 cut(s) 263
AcyI GRCGYC 1 cut(s) 231
AgsI TTSAA 2 cut(s) 75, 177
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
Alw26I GTCTC 2 cut(s) 243, 271
ApeKI GCWGC 1 cut(s) 140
AspS9I GGNCC 1 cut(s) 117
AvaII GGWCC 1 cut(s) 117
BbsI GAAGAC 2 cut(s) 52, 154
BbvI GCAGC 1 cut(s) 152
BccI CCATC 1 cut(s) 10
BceAI ACGGC 1 cut(s) 268
BcoDI GTCTC 2 cut(s) 243, 271
BfaI CTAG 2 cut(s) 270, 290
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
Bme18I GGWCC 1 cut(s) 117
BmgT120I GGNCC 1 cut(s) 117
BmiI GGNNCC 1 cut(s) 118
BpiI GAAGAC 2 cut(s) 52, 154
BsaHI GRCGYC 1 cut(s) 231
BseMII CTCAG 3 cut(s) 35, 135, 259
BseXI GCAGC 1 cut(s) 152
BslFI GGGAC 1 cut(s) 130
BsmAI GTCTC 2 cut(s) 243, 271
BsmBI CGTCTC 2 cut(s) 243, 271
BsmFI GGGAC 1 cut(s) 130
BspCNI CTCAG 3 cut(s) 36, 136, 258
BspLI GGNNCC 1 cut(s) 118
BssNI GRCGYC 1 cut(s) 231
Bst4CI ACNGT 1 cut(s) 121
BstACI GRCGYC 1 cut(s) 231
BstDEI CTNAG 3 cut(s) 44, 144, 245
BstMAI GTCTC 2 cut(s) 243, 271
BstV1I GCAGC 1 cut(s) 152
BstV2I GAAGAC 2 cut(s) 52, 154
Cfr13I GGNCC 1 cut(s) 117
CseI GACGC 1 cut(s) 239
CviJI RGCY 5 cut(s) 43, 51, 128, 143, 153
CviKI_1 RGCY 5 cut(s) 43, 51, 128, 143, 153
DdeI CTNAG 3 cut(s) 44, 144, 245
DrdI GACNNNNNNGTC 1 cut(s) 263
DseDI GACNNNNNNGTC 1 cut(s) 263
Eco47I GGWCC 1 cut(s) 117
Esp3I CGTCTC 2 cut(s) 243, 271
FaiI YATR 6 cut(s) 56, 99, 134, 158, 201, 301
FaqI GGGAC 1 cut(s) 130
Fnu4HI GCNGC 1 cut(s) 141
Fsp4HI GCNGC 1 cut(s) 141
FspBI CTAG 2 cut(s) 270, 290
GluI GCNGC 1 cut(s) 141
HgaI GACGC 1 cut(s) 239
Hin1I GRCGYC 1 cut(s) 231
HinfI GANTC 1 cut(s) 4
Hpy188I TCNGA 1 cut(s) 248
Hpy188III TCNNGA 1 cut(s) 8
Hpy99I CGWCG 1 cut(s) 260
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 2 cut(s) 140, 287
HpyF3I CTNAG 3 cut(s) 44, 144, 245
HpySE526I ACGT 1 cut(s) 258
Hsp92I GRCGYC 1 cut(s) 231
LpnPI CCDG 1 cut(s) 259
Lsp1109I GCAGC 1 cut(s) 152
MaeI CTAG 2 cut(s) 270, 290
MaeII ACGT 1 cut(s) 258
MboII GAAGA 2 cut(s) 52, 154
MluCI AATT 1 cut(s) 11
MnlI CCTC 4 cut(s) 33, 41, 143, 254
MspA1I CMGCKG 1 cut(s) 143
NlaIV GGNNCC 1 cut(s) 118
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 1 cut(s) 142
PsiI TTATAA 1 cut(s) 134
PspN4I GGNNCC 1 cut(s) 118
PspPI GGNCC 1 cut(s) 117
PvuII CAGCTG 1 cut(s) 143
SatI GCNGC 1 cut(s) 141
Sau96I GGNCC 1 cut(s) 117
SetI ASST 2 cut(s) 145, 261
SgeI CNNG 9 cut(s) 20, 78, 87, 121, 180, 189, 239, 282, 286
SinI GGWCC 1 cut(s) 117
Sse9I AATT 1 cut(s) 11
SspMI CTAG 2 cut(s) 270, 290
TaaI ACNGT 1 cut(s) 121
TaiI ACGT 1 cut(s) 261
TasI AATT 1 cut(s) 11
TfiI GAWTC 1 cut(s) 4
TseI GCWGC 1 cut(s) 140
TspDTI ATGAA 3 cut(s) 17, 73, 175
TspGWI ACGGA 1 cut(s) 38
VpaK11BI GGWCC 1 cut(s) 117
XspI CTAG 2 cut(s) 270, 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.