Rroxscaffold_5G00354540

Receptor-like protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
N/A
Physical Location & Seq
Reverse (-)
33013584 .. 33017408
3825 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00354540.1

Sequence Viewer

Length: 354 bp
ATGGTTGAGTCCGAAGAGAAAAACGTTGCGTTACTTGCTCCTCGGAAAGACCACGACGGTCCGCACGAGAATGCGATGCAGTTCTTTCAAGATGGGGTTTTTGAGAAAGCTATATTAAATGAGACCAGAGGCAATGGGGTTCTTTCAAGATTGGGTTTTTTACCACACTTGCCACTTGTGTTATGGGGTCTCACATCTACCTTTCTTGGAGGAATGAAAACTAGGATTGTAGGGATCGGAGAACGCGGTGGAATGTCAACTCTCATACAAACTCTTTTTCCGGTCGTCGATCCCGATGCTAGCCGGATTTTGATAGATGACATCAATATCTCTTCTATTGAATTGCATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

117

Amino Acids

12.87

Weight (kDa)

5.07

Isoelectric Point (pI)

39.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 246
AciI CCGC 2 cut(s) 62, 246
AclI AACGTT 1 cut(s) 24
AclWI GGATC 2 cut(s) 242, 284
AgsI TTSAA 3 cut(s) 89, 147, 341
AluBI AGCT 1 cut(s) 110
AluI AGCT 1 cut(s) 110
Alw26I GTCTC 2 cut(s) 116, 194
AlwI GGATC 2 cut(s) 242, 284
AspS9I GGNCC 1 cut(s) 59
AsuNHI GCTAGC 1 cut(s) 299
AvaII GGWCC 1 cut(s) 59
BauI CACGAG 1 cut(s) 65
BccI CCATC 1 cut(s) 86
BcgI CGANNNNNNTGC 2 cut(s) 278, 312
BcoDI GTCTC 2 cut(s) 116, 194
BfaI CTAG 2 cut(s) 222, 300
Bme18I GGWCC 1 cut(s) 59
BmgT120I GGNCC 1 cut(s) 59
BmsI GCATC 2 cut(s) 66, 286
BmtI GCTAGC 1 cut(s) 303
BsaI GGTCTC 2 cut(s) 116, 194
BsaJI CCNNGG 1 cut(s) 41
BsaWI WCCGGW 1 cut(s) 280
Bse3DI GCAATG 1 cut(s) 139
BseDI CCNNGG 1 cut(s) 41
BseMI GCAATG 1 cut(s) 139
BseRI GAGGAG 1 cut(s) 30
Bsh1236I CGCG 1 cut(s) 246
Bsh1285I CGRYCG 1 cut(s) 285
BsiEI CGRYCG 1 cut(s) 285
BsiSI CCGG 2 cut(s) 281, 304
BsmAI GTCTC 2 cut(s) 116, 194
BsmI GAATGC 1 cut(s) 76
Bso31I GGTCTC 2 cut(s) 116, 194
Bsp143I GATC 2 cut(s) 234, 289
BspACI CCGC 2 cut(s) 62, 246
BspFNI CGCG 1 cut(s) 246
BspOI GCTAGC 1 cut(s) 303
BspPI GGATC 2 cut(s) 242, 284
BspTNI GGTCTC 2 cut(s) 116, 194
BsrDI GCAATG 1 cut(s) 139
BssECI CCNNGG 1 cut(s) 41
BssMI GATC 2 cut(s) 234, 289
BssSI CACGAG 1 cut(s) 65
Bst2BI CACGAG 1 cut(s) 65
Bst4CI ACNGT 1 cut(s) 59
Bst6I CTCTTC 2 cut(s) 9, 337
BstC8I GCNNGC 1 cut(s) 301
BstFNI CGCG 1 cut(s) 246
BstKTI GATC 2 cut(s) 237, 292
BstMAI GTCTC 2 cut(s) 116, 194
BstMBI GATC 2 cut(s) 234, 289
BstMCI CGRYCG 1 cut(s) 285
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstUI CGCG 1 cut(s) 246
BtgZI GCGATG 1 cut(s) 89
Cac8I GCNNGC 1 cut(s) 301
Cfr13I GGNCC 1 cut(s) 59
CpoI CGGWCCG 1 cut(s) 59
CspI CGGWCCG 1 cut(s) 59
CviAII CATG 1 cut(s) 347
CviJI RGCY 2 cut(s) 110, 303
CviKI_1 RGCY 2 cut(s) 110, 303
DpnI GATC 2 cut(s) 236, 291
DpnII GATC 2 cut(s) 234, 289
Eam1104I CTCTTC 2 cut(s) 9, 337
EarI CTCTTC 2 cut(s) 9, 337
Eco31I GGTCTC 2 cut(s) 116, 194
Eco47I GGWCC 1 cut(s) 59
FaeI CATG 1 cut(s) 350
FaiI YATR 4 cut(s) 113, 184, 266, 348
FatI CATG 1 cut(s) 346
FspBI CTAG 2 cut(s) 222, 300
HapII CCGG 2 cut(s) 281, 304
Hin1II CATG 1 cut(s) 350
HincII GTYRAC 1 cut(s) 258
HindII GTYRAC 1 cut(s) 258
HinfI GANTC 1 cut(s) 8
HpaII CCGG 2 cut(s) 281, 304
Hpy166II GTNNAC 1 cut(s) 258
Hpy188I TCNGA 3 cut(s) 13, 45, 239
Hpy188III TCNNGA 3 cut(s) 89, 147, 293
Hpy8I GTNNAC 1 cut(s) 258
Hpy99I CGWCG 2 cut(s) 59, 290
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4IV ACGT 1 cut(s) 24
HpyCH4V TGCA 2 cut(s) 79, 346
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpySE526I ACGT 1 cut(s) 24
Hsp92II CATG 1 cut(s) 350
Kzo9I GATC 2 cut(s) 234, 289
LmnI GCTCC 1 cut(s) 43
LpnPI CCDG 3 cut(s) 139, 294, 317
LweI GCATC 2 cut(s) 66, 286
MaeI CTAG 2 cut(s) 222, 300
MaeII ACGT 1 cut(s) 24
MaeIII GTNAC 1 cut(s) 30
MalI GATC 2 cut(s) 236, 291
MboI GATC 2 cut(s) 234, 289
MboII GAAGA 2 cut(s) 26, 324
MluCI AATT 1 cut(s) 341
MlyI GAGTC 1 cut(s) 17
MnlI CCTC 3 cut(s) 51, 122, 203
MseI TTAA 1 cut(s) 116
MslI CAYNNNNRTG 1 cut(s) 69
MspI CCGG 2 cut(s) 281, 304
Mva1269I GAATGC 1 cut(s) 76
MvnI CGCG 1 cut(s) 246
MwoI GCNNNNNNNGC 1 cut(s) 35
NdeII GATC 2 cut(s) 234, 289
NheI GCTAGC 1 cut(s) 299
NlaIII CATG 1 cut(s) 350
PcsI WCGNNNNNNNCGW 2 cut(s) 63, 291
PctI GAATGC 1 cut(s) 76
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
Psp1406I AACGTT 1 cut(s) 24
PspPI GGNCC 1 cut(s) 59
RseI CAYNNNNRTG 1 cut(s) 69
Rsr2I CGGWCCG 1 cut(s) 59
RsrII CGGWCCG 1 cut(s) 59
SaqAI TTAA 1 cut(s) 116
Sau3AI GATC 2 cut(s) 234, 289
Sau96I GGNCC 1 cut(s) 59
SchI GAGTC 1 cut(s) 17
SetI ASST 3 cut(s) 27, 112, 203
SfaNI GCATC 2 cut(s) 66, 286
SinI GGWCC 1 cut(s) 59
SmiMI CAYNNNNRTG 1 cut(s) 69
Sse9I AATT 1 cut(s) 341
SsiI CCGC 2 cut(s) 62, 246
SspMI CTAG 2 cut(s) 222, 300
TaaI ACNGT 1 cut(s) 59
TaiI ACGT 1 cut(s) 27
TaqI TCGA 1 cut(s) 288
TasI AATT 1 cut(s) 341
Tru1I TTAA 1 cut(s) 116
Tru9I TTAA 1 cut(s) 116
TspDTI ATGAA 1 cut(s) 230
VpaK11BI GGWCC 1 cut(s) 59
XcmI CCANNNNNNNNNTGG 1 cut(s) 180
XspI CTAG 2 cut(s) 222, 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.