Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

33788353 .. 33789445

Gene Structure 1093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00355170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGAGAAATCTGAATACAAGTCTCAGTAGCAGTGAGTATAAGGCTGCTTGTTGGGAAAATTGTAACTGTGTTCGATTCAACTTTCTAATTGATAATCAGAGTGGATGCCGGCCACATGCAAGTTTTGGAATAAAAACTGGGAGTTTACTGTGCGCCTCTCTGGTTATAGCTCAAATTTCTACACTACTGATCCAAAGAGGCGAAAATGGGACAAGGATTGAGAATGAATTGGATGACTTGATGAAATCTGATAGATTTTTCGATAATGTCGATGGACACCAAAATGATGGAAACATGGAACATGATCAAAGCGTATTTAGCAATGCATCCGGCTTGTCTTGTCTGCCGCTTGGACTTGTTTATAAGCCAATTCAGGGAAAATTGATAAGGGGACAAGAAATAGCTGTGAAGAAGCTTTTATGGCGTTCCGGGCAAGGAGTGCTCGAGCATGAAAATGAACTGATGGTTGTATCTGAACTTCAACATACAAACCTTGTTCATCTTTTCGGGTTTTGTTCATCTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr

Protein Analysis

175

Amino Acids

19.51

Weight (kDa)

5.83

Isoelectric Point (pI)

27.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	363
AciI	CCGC	1 cut(s)	347
AclWI	GGATC	1 cut(s)	184
AcoI	YGGCCR	1 cut(s)	110
AcsI	RAATTY	1 cut(s)	174
AfiI	CCNNNNNNNGG	1 cut(s)	374
AgsI	TTSAA	2 cut(s)	79, 482
AluBI	AGCT	3 cut(s)	170, 404, 415
AluI	AGCT	3 cut(s)	170, 404, 415
Alw21I	GWGCWC	1 cut(s)	444
Alw26I	GTCTC	1 cut(s)	26
AlwI	GGATC	1 cut(s)	184
Ama87I	CYCGRG	1 cut(s)	443
AoxI	GGCC	1 cut(s)	110
ApeKI	GCWGC	1 cut(s)	44
ApoI	RAATTY	1 cut(s)	174
AspLEI	GCGC	1 cut(s)	155
AsuC2I	CCSGG	1 cut(s)	430
AvaI	CYCGRG	1 cut(s)	443
BarI	GAAGNNNNNNTAC	2 cut(s)	462, 494
Bbv12I	GWGCWC	1 cut(s)	444
BbvI	GCAGC	1 cut(s)	31
BccI	CCATC	3 cut(s)	266, 281, 457
BclI	TGATCA	1 cut(s)	304
BcnI	CCSGG	1 cut(s)	430
BcoDI	GTCTC	1 cut(s)	26
BisI	GCNGC	2 cut(s)	45, 347
BlsI	GCNGC	2 cut(s)	46, 348
Bme1390I	CCNGG	1 cut(s)	430
BmeT110I	CYCGRG	1 cut(s)	443
BmrFI	CCNGG	1 cut(s)	430
BmrI	ACTGGG	1 cut(s)	147
BmsI	GCATC	2 cut(s)	95, 335
BmuI	ACTGGG	1 cut(s)	147
BpuMI	CCSGG	1 cut(s)	430
Bsc4I	CCNNNNNNNGG	1 cut(s)	374
Bse118I	RCCGGY	1 cut(s)	108
Bse1I	ACTGG	1 cut(s)	142
Bse3DI	GCAATG	1 cut(s)	328
BseGI	GGATG	3 cut(s)	110, 238, 326
BseLI	CCNNNNNNNGG	1 cut(s)	374
BseMI	GCAATG	1 cut(s)	328
BseMII	CTCAG	1 cut(s)	37
BseNI	ACTGG	1 cut(s)	142
BseXI	GCAGC	1 cut(s)	31
BshFI	GGCC	1 cut(s)	112
BsiHKAI	GWGCWC	1 cut(s)	444
BsiHKCI	CYCGRG	1 cut(s)	443
BsiSI	CCGG	3 cut(s)	109, 330, 429
BslFI	GGGAC	2 cut(s)	223, 405
BslI	CCNNNNNNNGG	1 cut(s)	374
BsmAI	GTCTC	1 cut(s)	26
BsmFI	GGGAC	2 cut(s)	223, 405
BsnI	GGCC	1 cut(s)	112
BsoBI	CYCGRG	1 cut(s)	443
Bsp1286I	GDGCHC	1 cut(s)	444
Bsp143I	GATC	2 cut(s)	189, 304
BspACI	CCGC	1 cut(s)	347
BspANI	GGCC	1 cut(s)	112
BspCNI	CTCAG	1 cut(s)	36
BspPI	GGATC	1 cut(s)	184
BsrDI	GCAATG	1 cut(s)	328
BsrFI	RCCGGY	1 cut(s)	108
BsrI	ACTGG	1 cut(s)	142
BssAI	RCCGGY	1 cut(s)	108
BssMI	GATC	2 cut(s)	189, 304
Bst4CI	ACNGT	2 cut(s)	68, 150
BstAPI	GCANNNNNTGC	1 cut(s)	439
BstC8I	GCNNGC	1 cut(s)	110
BstDEI	CTNAG	1 cut(s)	23
BstF5I	GGATG	3 cut(s)	110, 238, 326
BstHHI	GCGC	1 cut(s)	155
BstKTI	GATC	2 cut(s)	192, 307
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	2 cut(s)	189, 304
BstMWI	GCNNNNNNNGC	4 cut(s)	318, 421, 430, 439
BstNSI	RCATGY	1 cut(s)	119
BstSCI	CCNGG	1 cut(s)	428
BstV1I	GCAGC	1 cut(s)	31
BstXI	CCANNNNNNTGG	1 cut(s)	287
BsuRI	GGCC	1 cut(s)	112
BtsCI	GGATG	3 cut(s)	110, 238, 326
BtsI	GCAGTG	1 cut(s)	37
BtsIMutI	CAGTG	1 cut(s)	37
Cac8I	GCNNGC	1 cut(s)	110
CfoI	GCGC	1 cut(s)	155
Cfr10I	RCCGGY	1 cut(s)	108
CviAII	CATG	4 cut(s)	116, 295, 302, 449
CviJI	RGCY	7 cut(s)	44, 112, 170, 333, 367, 404, 415
CviKI_1	RGCY	7 cut(s)	44, 112, 170, 333, 367, 404, 415
DdeI	CTNAG	1 cut(s)	23
DpnI	GATC	2 cut(s)	191, 306
DpnII	GATC	2 cut(s)	189, 304
EaeI	YGGCCR	1 cut(s)	110
Eco88I	CYCGRG	1 cut(s)	443
EcoT22I	ATGCAT	1 cut(s)	328
FaeI	CATG	4 cut(s)	119, 298, 305, 452
FaiI	YATR	9 cut(s)	39, 117, 167, 296, 303, 363, 421, 450, 486
FaqI	GGGAC	2 cut(s)	223, 405
FatI	CATG	4 cut(s)	115, 294, 301, 448
FbaI	TGATCA	1 cut(s)	304
Fnu4HI	GCNGC	2 cut(s)	45, 347
FokI	GGATG	3 cut(s)	117, 245, 313
Fsp4HI	GCNGC	2 cut(s)	45, 347
GlaI	GCGC	1 cut(s)	154
GluI	GCNGC	2 cut(s)	45, 347
HaeIII	GGCC	1 cut(s)	112
HapII	CCGG	3 cut(s)	109, 330, 429
HhaI	GCGC	1 cut(s)	155
Hin1II	CATG	4 cut(s)	119, 298, 305, 452
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HindIII	AAGCTT	1 cut(s)	413
HinfI	GANTC	1 cut(s)	75
HpaII	CCGG	3 cut(s)	109, 330, 429
Hpy166II	GTNNAC	1 cut(s)	146
Hpy188I	TCNGA	5 cut(s)	12, 99, 250, 475, 527
Hpy8I	GTNNAC	1 cut(s)	146
HpyCH4III	ACNGT	2 cut(s)	68, 150
HpyCH4V	TGCA	2 cut(s)	119, 326
HpyF10VI	GCNNNNNNNGC	4 cut(s)	318, 421, 430, 439
HpyF3I	CTNAG	1 cut(s)	23
Hsp92II	CATG	4 cut(s)	119, 298, 305, 452
HspAI	GCGC	1 cut(s)	153
KroI	GCCGGC	1 cut(s)	108
KroNI	GCCGGC	1 cut(s)	110
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	2 cut(s)	189, 304
LpnPI	CCDG	6 cut(s)	122, 123, 146, 343, 359, 442
Lsp1109I	GCAGC	1 cut(s)	31
LweI	GCATC	2 cut(s)	95, 335
MaeIII	GTNAC	1 cut(s)	62
MalI	GATC	2 cut(s)	191, 306
MboI	GATC	2 cut(s)	189, 304
MboII	GAAGA	1 cut(s)	421
MhlI	GDGCHC	1 cut(s)	444
MluCI	AATT	6 cut(s)	58, 87, 174, 227, 369, 380
MnlI	CCTC	2 cut(s)	166, 191
Mph1103I	ATGCAT	1 cut(s)	328
MroNI	GCCGGC	1 cut(s)	108
MslI	CAYNNNNRTG	2 cut(s)	282, 453
MspI	CCGG	3 cut(s)	109, 330, 429
MspR9I	CCNGG	1 cut(s)	430
MwoI	GCNNNNNNNGC	4 cut(s)	318, 421, 430, 439
NaeI	GCCGGC	1 cut(s)	110
NciI	CCSGG	1 cut(s)	430
NdeII	GATC	2 cut(s)	189, 304
NgoMIV	GCCGGC	1 cut(s)	108
NlaIII	CATG	4 cut(s)	119, 298, 305, 452
NsiI	ATGCAT	1 cut(s)	328
NspI	RCATGY	1 cut(s)	119
PaeR7I	CTCGAG	1 cut(s)	443
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PdiI	GCCGGC	1 cut(s)	110
PfeI	GAWTC	1 cut(s)	75
PkrI	GCNGC	2 cut(s)	46, 348
PsiI	TTATAA	1 cut(s)	363
PspXI	VCTCGAGB	1 cut(s)	443
RseI	CAYNNNNRTG	2 cut(s)	282, 453
SatI	GCNGC	2 cut(s)	45, 347
Sau3AI	GATC	2 cut(s)	189, 304
ScrFI	CCNGG	1 cut(s)	430
SduI	GDGCHC	1 cut(s)	444
SetI	ASST	4 cut(s)	172, 406, 417, 495
SfaNI	GCATC	2 cut(s)	95, 335
Sfr274I	CTCGAG	1 cut(s)	443
SlaI	CTCGAG	1 cut(s)	443
SmiMI	CAYNNNNRTG	2 cut(s)	282, 453
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	6 cut(s)	58, 87, 174, 227, 369, 380
SsiI	CCGC	1 cut(s)	347
StyD4I	CCNGG	1 cut(s)	428
TaaI	ACNGT	2 cut(s)	68, 150
TaqI	TCGA	4 cut(s)	73, 261, 270, 444
TasI	AATT	6 cut(s)	58, 87, 174, 227, 369, 380
TauI	GCSGC	1 cut(s)	349
TfiI	GAWTC	1 cut(s)	75
TscAI	CASTG	1 cut(s)	37
TseI	GCWGC	1 cut(s)	44
TspDTI	ATGAA	6 cut(s)	240, 257, 465, 471, 488, 507
TspRI	CASTG	1 cut(s)	37
XapI	RAATTY	1 cut(s)	174
XceI	RCATGY	1 cut(s)	119
XhoI	CTCGAG	1 cut(s)	443
Zsp2I	ATGCAT	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.