Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

36754070 .. 36757169

Gene Structure 3100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00357180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGATTGAAAAAACCGGTCTCTATTATCAGAGCAAAACCATTTCATCTTATAAAACCAACAAGAAACAGAGTGCCTGTACTTCAACACAACACATGGGTTCTGTACTTCATAGTTCATACCATGAGTTCAGAACTGAACGGTGCTTATCCGTCCCAGAAAATGTCAATTGGATCCTGAGGATGCAATTCACAGTGCCTCCATGGGTTTTGCAGATGTTTGTCCCGATTGCACAGGGCAAACGAAACTGGAGTTCCCTGAACATATGCATAGGAGGCCACGTTATTCGATCAATTGCGAGAAAAGACAGCCACAACAAGATCTACACGTCCAAGGGCCCAAGAGACAGGAGGTCCGGCTTTCACTCAATCGCCATAGAGTTATATGATGTTCAAGACCGTCTTGGCTTTGATAGACCAAGCAAGGCCATTGACTGGTCTCCCATATGGGAGGCAACTGATCTCCTCCTTCGTGTTCTTCATTTCGCTGAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0045962 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

164

Amino Acids

19.0

Weight (kDa)

9.6

Isoelectric Point (pI)

66.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	99 - 145	7.5e-14	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	51
AccB7I	CCANNNNNTGG	1 cut(s)	432
AclWI	GGATC	2 cut(s)	166, 179
AcsI	RAATTY	1 cut(s)	489
AfaI	GTAC	2 cut(s)	79, 105
AfiI	CCNNNNNNNGG	1 cut(s)	432
AflIII	ACRYGT	1 cut(s)	324
AgeI	ACCGGT	1 cut(s)	14
AgsI	TTSAA	3 cut(s)	8, 84, 392
AhdI	GACNNNNNGTC	1 cut(s)	349
AjiI	CACGTC	1 cut(s)	327
Alw26I	GTCTC	3 cut(s)	23, 336, 441
AlwI	GGATC	2 cut(s)	166, 179
AoxI	GGCC	3 cut(s)	274, 334, 423
ApaI	GGGCCC	1 cut(s)	338
ApoI	RAATTY	1 cut(s)	489
AsiGI	ACCGGT	1 cut(s)	14
AspS9I	GGNCC	3 cut(s)	334, 335, 351
AvaII	GGWCC	1 cut(s)	351
AxyI	CCTNAGG	1 cut(s)	176
BaeGI	GKGCMC	1 cut(s)	338
BamHI	GGATCC	1 cut(s)	171
BanII	GRGCYC	1 cut(s)	338
BcoDI	GTCTC	3 cut(s)	23, 336, 441
BglII	AGATCT	1 cut(s)	318
Bme18I	GGWCC	1 cut(s)	351
BmeRI	GACNNNNNGTC	1 cut(s)	349
BmgBI	CACGTC	1 cut(s)	327
BmgT120I	GGNCC	3 cut(s)	334, 335, 351
BmiI	GGNNCC	2 cut(s)	173, 336
BmsI	GCATC	1 cut(s)	171
BpmI	CTGGAG	1 cut(s)	268
BsaI	GGTCTC	2 cut(s)	23, 441
BsaJI	CCNNGG	2 cut(s)	200, 330
BsaWI	WCCGGW	1 cut(s)	14
BsaXI	ACNNNNNCTCC	4 cut(s)	181, 211, 264, 294
Bsc4I	CCNNNNNNNGG	1 cut(s)	432
Bse118I	RCCGGY	1 cut(s)	14
Bse1I	ACTGG	2 cut(s)	251, 437
Bse21I	CCTNAGG	1 cut(s)	176
BseDI	CCNNGG	2 cut(s)	200, 330
BseGI	GGATG	1 cut(s)	186
BseLI	CCNNNNNNNGG	1 cut(s)	432
BseMII	CTCAG	1 cut(s)	167
BseNI	ACTGG	2 cut(s)	251, 437
BseRI	GAGGAG	1 cut(s)	452
BseSI	GKGCMC	1 cut(s)	338
BshFI	GGCC	3 cut(s)	276, 336, 425
BshTI	ACCGGT	1 cut(s)	14
BsiSI	CCGG	2 cut(s)	15, 354
BslFI	GGGAC	2 cut(s)	137, 206
BslI	CCNNNNNNNGG	1 cut(s)	432
BsmAI	GTCTC	3 cut(s)	23, 336, 441
BsmFI	GGGAC	2 cut(s)	137, 206
BsnI	GGCC	3 cut(s)	276, 336, 425
Bso31I	GGTCTC	2 cut(s)	23, 441
Bsp120I	GGGCCC	1 cut(s)	334
Bsp1286I	GDGCHC	1 cut(s)	338
Bsp143I	GATC	4 cut(s)	171, 287, 318, 457
Bsp19I	CCATGG	1 cut(s)	200
BspANI	GGCC	3 cut(s)	276, 336, 425
BspCNI	CTCAG	1 cut(s)	168
BspLI	GGNNCC	2 cut(s)	173, 336
BspPI	GGATC	2 cut(s)	166, 179
BspTNI	GGTCTC	2 cut(s)	23, 441
BsrFI	RCCGGY	1 cut(s)	14
BsrI	ACTGG	2 cut(s)	251, 437
BssAI	RCCGGY	1 cut(s)	14
BssECI	CCNNGG	2 cut(s)	200, 330
BssMI	GATC	4 cut(s)	171, 287, 318, 457
BssT1I	CCWWGG	2 cut(s)	200, 330
Bst4CI	ACNGT	3 cut(s)	141, 193, 398
BstDEI	CTNAG	1 cut(s)	176
BstDSI	CCRYGG	1 cut(s)	200
BstF5I	GGATG	1 cut(s)	186
BstKTI	GATC	4 cut(s)	174, 290, 321, 460
BstMAI	GTCTC	3 cut(s)	23, 336, 441
BstMBI	GATC	4 cut(s)	171, 287, 318, 457
BstMWI	GCNNNNNNNGC	1 cut(s)	273
BstSLI	GKGCMC	1 cut(s)	338
BstX2I	RGATCY	2 cut(s)	171, 318
BstYI	RGATCY	2 cut(s)	171, 318
Bsu36I	CCTNAGG	1 cut(s)	176
BsuRI	GGCC	3 cut(s)	276, 336, 425
BtgI	CCRYGG	1 cut(s)	200
BtrI	CACGTC	1 cut(s)	327
BtsCI	GGATG	1 cut(s)	186
BtsIMutI	CAGTG	1 cut(s)	198
Cfr10I	RCCGGY	1 cut(s)	14
Cfr13I	GGNCC	3 cut(s)	334, 335, 351
Csp6I	GTAC	2 cut(s)	78, 104
CspAI	ACCGGT	1 cut(s)	14
CviAII	CATG	3 cut(s)	94, 122, 201
CviJI	RGCY	6 cut(s)	276, 309, 336, 357, 405, 425
CviKI_1	RGCY	6 cut(s)	276, 309, 336, 357, 405, 425
CviQI	GTAC	2 cut(s)	78, 104
DdeI	CTNAG	1 cut(s)	176
DpnI	GATC	4 cut(s)	173, 289, 320, 459
DpnII	GATC	4 cut(s)	171, 287, 318, 457
DriI	GACNNNNNGTC	1 cut(s)	349
Eam1105I	GACNNNNNGTC	1 cut(s)	349
Eco130I	CCWWGG	2 cut(s)	200, 330
Eco24I	GRGCYC	1 cut(s)	338
Eco31I	GGTCTC	2 cut(s)	23, 441
Eco47I	GGWCC	1 cut(s)	351
Eco81I	CCTNAGG	1 cut(s)	176
EcoO109I	RGGNCCY	1 cut(s)	334
EcoT14I	CCWWGG	2 cut(s)	200, 330
EcoT22I	ATGCAT	1 cut(s)	269
EcoT38I	GRGCYC	1 cut(s)	338
ErhI	CCWWGG	2 cut(s)	200, 330
FaeI	CATG	3 cut(s)	97, 125, 204
FalI	AAGNNNNNCTT	2 cut(s)	384, 416
FaqI	GGGAC	2 cut(s)	137, 206
FatI	CATG	3 cut(s)	93, 121, 200
FauNDI	CATATG	2 cut(s)	263, 443
FokI	GGATG	1 cut(s)	193
FriOI	GRGCYC	1 cut(s)	338
GsuI	CTGGAG	1 cut(s)	268
HaeIII	GGCC	3 cut(s)	276, 336, 425
HapII	CCGG	2 cut(s)	15, 354
Hin1II	CATG	3 cut(s)	97, 125, 204
HpaII	CCGG	2 cut(s)	15, 354
Hpy188I	TCNGA	2 cut(s)	30, 131
Hpy188III	TCNNGA	3 cut(s)	175, 223, 392
HpyAV	CCTTC	1 cut(s)	476
HpyCH4III	ACNGT	3 cut(s)	141, 193, 398
HpyCH4IV	ACGT	2 cut(s)	279, 326
HpyCH4V	TGCA	4 cut(s)	184, 211, 230, 267
HpyF10VI	GCNNNNNNNGC	1 cut(s)	273
HpyF3I	CTNAG	1 cut(s)	176
HpySE526I	ACGT	2 cut(s)	279, 326
Hsp92II	CATG	3 cut(s)	97, 125, 204
Kzo9I	GATC	4 cut(s)	171, 287, 318, 457
LweI	GCATC	1 cut(s)	171
MaeII	ACGT	2 cut(s)	279, 326
MalI	GATC	4 cut(s)	173, 289, 320, 459
MboI	GATC	4 cut(s)	171, 287, 318, 457
MboII	GAAGA	1 cut(s)	467
MfeI	CAATTG	2 cut(s)	166, 291
MflI	RGATCY	2 cut(s)	171, 318
MhlI	GDGCHC	1 cut(s)	338
MluCI	AATT	4 cut(s)	166, 185, 291, 489
MnlI	CCTC	6 cut(s)	171, 207, 266, 342, 442, 473
Mph1103I	ATGCAT	1 cut(s)	269
MspI	CCGG	2 cut(s)	15, 354
MunI	CAATTG	2 cut(s)	166, 291
MwoI	GCNNNNNNNGC	1 cut(s)	273
NcoI	CCATGG	1 cut(s)	200
NdeI	CATATG	2 cut(s)	263, 443
NdeII	GATC	4 cut(s)	171, 287, 318, 457
NlaIII	CATG	3 cut(s)	97, 125, 204
NlaIV	GGNNCC	2 cut(s)	173, 336
NsiI	ATGCAT	1 cut(s)	269
PflMI	CCANNNNNTGG	1 cut(s)	432
PinAI	ACCGGT	1 cut(s)	14
PsiI	TTATAA	1 cut(s)	51
PspN4I	GGNNCC	2 cut(s)	173, 336
PspOMI	GGGCCC	1 cut(s)	334
PspPI	GGNCC	3 cut(s)	334, 335, 351
PsuI	RGATCY	2 cut(s)	171, 318
RsaI	GTAC	2 cut(s)	79, 105
RsaNI	GTAC	2 cut(s)	78, 104
Sau3AI	GATC	4 cut(s)	171, 287, 318, 457
Sau96I	GGNCC	3 cut(s)	334, 335, 351
SduI	GDGCHC	1 cut(s)	338
SetI	ASST	3 cut(s)	282, 329, 353
SfaNI	GCATC	1 cut(s)	171
SinI	GGWCC	1 cut(s)	351
Sse9I	AATT	4 cut(s)	166, 185, 291, 489
StyI	CCWWGG	2 cut(s)	200, 330
TaaI	ACNGT	3 cut(s)	141, 193, 398
TaiI	ACGT	2 cut(s)	282, 329
TaqI	TCGA	1 cut(s)	286
TasI	AATT	4 cut(s)	166, 185, 291, 489
TatI	WGTACW	2 cut(s)	77, 103
TscAI	CASTG	1 cut(s)	198
TspDTI	ATGAA	4 cut(s)	33, 98, 105, 467
TspGWI	ACGGA	1 cut(s)	139
TspRI	CASTG	1 cut(s)	198
Van91I	CCANNNNNTGG	1 cut(s)	432
VpaK11BI	GGWCC	1 cut(s)	351
XapI	RAATTY	1 cut(s)	489
Zsp2I	ATGCAT	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.