Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

41390554 .. 41405266

Gene Structure 14713 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00360780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGGTCTATTAAAATATAAGCAATTTGCATACCAAGCGGATCCCCATTGTGTGCTCTTCGAAGTCTATTTGGTCTACCAATATGGCAATATTACTTCTTTGGTGTCATCATTGAATACCCGTTCAGTCACTGCAGTTCTTTTGGACAATGGAAACTTTGTTGTCAATGATCATCTGGGAGCTGAGTTATGGCAGAGCTTTGATCATCCTGGTGGCACAGTCCTGCCAAACATGGTGTTGCGTTACGATAAGTCTGGAAAGGGGAACTTCTTGAGTTCTTGGAAAGCAGAGAACGGTCCATCACCAGGGAGATTCTTGATTGGATTGGCGCCAGAGACGCCGTCACAAGTGTTCATTTGGATCAATAGTGGATCAAATGATTCACATTCAGTTGCTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

133

Amino Acids

14.69

Weight (kDa)

6.01

Isoelectric Point (pI)

27.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	35 - 95	4.2e-14	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	328
AccI	GTMKAC	1 cut(s)	75
AciI	CCGC	1 cut(s)	38
AclWI	GGATC	4 cut(s)	35, 48, 368, 379
AcyI	GRCGYC	2 cut(s)	329, 338
AfiI	CCNNNNNNNGG	1 cut(s)	305
AgsI	TTSAA	1 cut(s)	115
AjnI	CCWGG	2 cut(s)	208, 304
AluBI	AGCT	2 cut(s)	182, 198
AluI	AGCT	2 cut(s)	182, 198
Alw21I	GWGCWC	1 cut(s)	57
Alw26I	GTCTC	1 cut(s)	329
AlwI	GGATC	4 cut(s)	35, 48, 368, 379
AlwNI	CAGNNNCTG	1 cut(s)	131
AspLEI	GCGC	1 cut(s)	331
AspS9I	GGNCC	1 cut(s)	296
AsuHPI	GGTGA	1 cut(s)	294
AsuII	TTCGAA	1 cut(s)	60
AvaII	GGWCC	1 cut(s)	296
BamHI	GGATCC	1 cut(s)	40
BanI	GGYRCC	1 cut(s)	328
Bbv12I	GWGCWC	1 cut(s)	57
BccI	CCATC	1 cut(s)	307
BceAI	ACGGC	1 cut(s)	325
BciT130I	CCWGG	2 cut(s)	210, 306
BclI	TGATCA	2 cut(s)	169, 202
BcoDI	GTCTC	1 cut(s)	329
BfaI	CTAG	1 cut(s)	400
BfmI	CTRYAG	1 cut(s)	132
BfoI	RGCGCY	1 cut(s)	332
Bme1390I	CCNGG	2 cut(s)	210, 306
Bme18I	GGWCC	1 cut(s)	296
BmgT120I	GGNCC	1 cut(s)	296
BmiI	GGNNCC	2 cut(s)	42, 330
BmrFI	CCNGG	2 cut(s)	210, 306
Bpu14I	TTCGAA	1 cut(s)	60
BpuEI	CTTGAG	1 cut(s)	292
BsaHI	GRCGYC	2 cut(s)	329, 338
BsaJI	CCNNGG	1 cut(s)	305
Bsc4I	CCNNNNNNNGG	1 cut(s)	305
BseBI	CCWGG	2 cut(s)	210, 306
BseDI	CCNNGG	1 cut(s)	305
BseGI	GGATG	1 cut(s)	205
BseLI	CCNNNNNNNGG	1 cut(s)	305
BseMII	CTCAG	1 cut(s)	174
BshNI	GGYRCC	1 cut(s)	328
BsiHKAI	GWGCWC	1 cut(s)	57
BslI	CCNNNNNNNGG	1 cut(s)	305
BsmAI	GTCTC	1 cut(s)	329
BsmBI	CGTCTC	1 cut(s)	329
Bsp119I	TTCGAA	1 cut(s)	60
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp143I	GATC	5 cut(s)	40, 169, 202, 360, 371
BspACI	CCGC	1 cut(s)	38
BspCNI	CTCAG	1 cut(s)	175
BspLI	GGNNCC	2 cut(s)	42, 330
BspMAI	CTGCAG	1 cut(s)	136
BspPI	GGATC	4 cut(s)	35, 48, 368, 379
BspQI	GCTCTTC	1 cut(s)	62
BspT104I	TTCGAA	1 cut(s)	60
BspT107I	GGYRCC	1 cut(s)	328
BssECI	CCNNGG	1 cut(s)	305
BssMI	GATC	5 cut(s)	40, 169, 202, 360, 371
BssNI	GRCGYC	2 cut(s)	329, 338
Bst2UI	CCWGG	2 cut(s)	210, 306
Bst4CI	ACNGT	2 cut(s)	220, 296
Bst6I	CTCTTC	1 cut(s)	62
BstACI	GRCGYC	2 cut(s)	329, 338
BstBI	TTCGAA	1 cut(s)	60
BstDEI	CTNAG	1 cut(s)	183
BstF5I	GGATG	1 cut(s)	205
BstH2I	RGCGCY	1 cut(s)	332
BstHHI	GCGC	1 cut(s)	331
BstKTI	GATC	5 cut(s)	43, 172, 205, 363, 374
BstMAI	GTCTC	1 cut(s)	329
BstMBI	GATC	5 cut(s)	40, 169, 202, 360, 371
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 337
BstNI	CCWGG	2 cut(s)	210, 306
BstSCI	CCNGG	2 cut(s)	208, 304
BstSFI	CTRYAG	1 cut(s)	132
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
BtsCI	GGATG	1 cut(s)	205
BtsI	GCAGTG	1 cut(s)	129
BtsIMutI	CAGTG	1 cut(s)	129
CaiI	CAGNNNCTG	1 cut(s)	131
CfoI	GCGC	1 cut(s)	331
Cfr13I	GGNCC	1 cut(s)	296
CseI	GACGC	1 cut(s)	346
CviAII	CATG	1 cut(s)	232
CviJI	RGCY	2 cut(s)	182, 198
CviKI_1	RGCY	2 cut(s)	182, 198
DdeI	CTNAG	1 cut(s)	183
DinI	GGCGCC	1 cut(s)	330
DpnI	GATC	5 cut(s)	42, 171, 204, 362, 373
DpnII	GATC	5 cut(s)	40, 169, 202, 360, 371
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Eco47I	GGWCC	1 cut(s)	296
EcoRII	CCWGG	2 cut(s)	208, 304
EgeI	GGCGCC	1 cut(s)	330
EheI	GGCGCC	1 cut(s)	330
Esp3I	CGTCTC	1 cut(s)	329
FaeI	CATG	1 cut(s)	235
FaiI	YATR	5 cut(s)	18, 31, 84, 190, 233
FalI	AAGNNNNNCTT	2 cut(s)	251, 283
FatI	CATG	1 cut(s)	231
FbaI	TGATCA	2 cut(s)	169, 202
FblI	GTMKAC	1 cut(s)	75
FokI	GGATG	1 cut(s)	192
FspBI	CTAG	1 cut(s)	400
GlaI	GCGC	1 cut(s)	330
HaeII	RGCGCY	1 cut(s)	332
HgaI	GACGC	1 cut(s)	346
HhaI	GCGC	1 cut(s)	331
Hin1I	GRCGYC	2 cut(s)	329, 338
Hin1II	CATG	1 cut(s)	235
Hin6I	GCGC	1 cut(s)	329
HinP1I	GCGC	1 cut(s)	329
HinfI	GANTC	2 cut(s)	312, 380
HphI	GGTGA	1 cut(s)	294
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188III	TCNNGA	3 cut(s)	255, 271, 316
Hpy8I	GTNNAC	1 cut(s)	76
HpyCH4III	ACNGT	2 cut(s)	220, 296
HpyCH4V	TGCA	2 cut(s)	29, 134
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 337
HpyF3I	CTNAG	1 cut(s)	183
Hsp92I	GRCGYC	2 cut(s)	329, 338
Hsp92II	CATG	1 cut(s)	235
HspAI	GCGC	1 cut(s)	329
KasI	GGCGCC	1 cut(s)	328
Ksp22I	TGATCA	2 cut(s)	169, 202
Kzo9I	GATC	5 cut(s)	40, 169, 202, 360, 371
LguI	GCTCTTC	1 cut(s)	62
LmnI	GCTCC	1 cut(s)	179
LpnPI	CCDG	8 cut(s)	161, 195, 222, 236, 240, 291, 318, 345
MaeI	CTAG	1 cut(s)	400
MaeIII	GTNAC	3 cut(s)	127, 242, 342
MalI	GATC	5 cut(s)	42, 171, 204, 362, 373
MboI	GATC	5 cut(s)	40, 169, 202, 360, 371
MboII	GAAGA	1 cut(s)	49
MflI	RGATCY	1 cut(s)	40
MhlI	GDGCHC	1 cut(s)	57
MluCI	AATT	1 cut(s)	23
Mly113I	GGCGCC	1 cut(s)	329
MseI	TTAA	1 cut(s)	11
MslI	CAYNNNNRTG	1 cut(s)	210
MspR9I	CCNGG	2 cut(s)	210, 306
MvaI	CCWGG	2 cut(s)	210, 306
MwoI	GCNNNNNNNGC	2 cut(s)	35, 337
NarI	GGCGCC	1 cut(s)	329
NdeII	GATC	5 cut(s)	40, 169, 202, 360, 371
NlaIII	CATG	1 cut(s)	235
NlaIV	GGNNCC	2 cut(s)	42, 330
NmuCI	GTSAC	2 cut(s)	127, 342
NspV	TTCGAA	1 cut(s)	60
PciSI	GCTCTTC	1 cut(s)	62
PfeI	GAWTC	2 cut(s)	312, 380
PflFI	GACNNNGTC	1 cut(s)	340
PluTI	GGCGCC	1 cut(s)	332
Psp6I	CCWGG	2 cut(s)	208, 304
PspGI	CCWGG	2 cut(s)	208, 304
PspN4I	GGNNCC	2 cut(s)	42, 330
PspPI	GGNCC	1 cut(s)	296
PstI	CTGCAG	1 cut(s)	136
PstNI	CAGNNNCTG	1 cut(s)	131
PsuI	RGATCY	1 cut(s)	40
PsyI	GACNNNGTC	1 cut(s)	340
RseI	CAYNNNNRTG	1 cut(s)	210
SapI	GCTCTTC	1 cut(s)	62
SaqAI	TTAA	1 cut(s)	11
Sau3AI	GATC	5 cut(s)	40, 169, 202, 360, 371
Sau96I	GGNCC	1 cut(s)	296
ScrFI	CCNGG	2 cut(s)	210, 306
SduI	GDGCHC	1 cut(s)	57
SetI	ASST	2 cut(s)	184, 200
SfcI	CTRYAG	1 cut(s)	132
SfoI	GGCGCC	1 cut(s)	330
SfuI	TTCGAA	1 cut(s)	60
SinI	GGWCC	1 cut(s)	296
SmiMI	CAYNNNNRTG	1 cut(s)	210
SmlI	CTYRAG	1 cut(s)	271
SmoI	CTYRAG	1 cut(s)	271
Sse9I	AATT	1 cut(s)	23
SsiI	CCGC	1 cut(s)	38
SspDI	GGCGCC	1 cut(s)	328
SspI	AATATT	1 cut(s)	91
SspMI	CTAG	1 cut(s)	400
StyD4I	CCNGG	2 cut(s)	208, 304
TaaI	ACNGT	2 cut(s)	220, 296
TaqI	TCGA	1 cut(s)	60
TasI	AATT	1 cut(s)	23
TfiI	GAWTC	2 cut(s)	312, 380
Tru1I	TTAA	1 cut(s)	11
Tru9I	TTAA	1 cut(s)	11
TscAI	CASTG	1 cut(s)	136
TseFI	GTSAC	2 cut(s)	127, 342
Tsp45I	GTSAC	2 cut(s)	127, 342
TspDTI	ATGAA	1 cut(s)	343
TspRI	CASTG	1 cut(s)	136
Tth111I	GACNNNGTC	1 cut(s)	340
VpaK11BI	GGWCC	1 cut(s)	296
XmiI	GTMKAC	1 cut(s)	75
XspI	CTAG	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.