Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

49075302 .. 49078117

Gene Structure 2816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00367210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGCGGGTCACCGAGGGCGATGAAATTGGCCCAAGCGTTGGCGGAGGTGGGCTAGACTGGTTTGGGTCTGCTCCTCGCTTTTCTCGGCGGGAAACCCTAGTTTGGTTTGGGTTGGGTTTGGGGCGGTGGGCCAATGGGCCGTTTTGGGTCTCTTGGGCTGACCTTTTTCCTTTTCTTAATCTTTTGGATTGGACCTGTTATGGTGTTAGGAGTGGTCGCTTTGTCCGCGCTGATCCAGACAAGGTGCTCGCGTCGTGGGATCCAGATCTTGTCTACCCTTGCACTTGGTTCCACATTACCTGCAACGATCAGATCCACGTTACCCGAGTGGATCTAGCTTCGCTTAACCTCTATGGAAATCTGGTACCCCCGTACCTGAACTTGGAAACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8

Protein Analysis

130

Amino Acids

14.72

Weight (kDa)

4.94

Isoelectric Point (pI)

29.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	308
Acc65I	GGTACC	1 cut(s)	364
AccB1I	GGYRCC	1 cut(s)	364
AccB7I	CCANNNNNTGG	1 cut(s)	38
AccI	GTMKAC	1 cut(s)	273
AccII	CGCG	2 cut(s)	228, 251
AciI	CCGC	5 cut(s)	4, 42, 88, 124, 226
AclWI	GGATC	5 cut(s)	227, 254, 267, 307, 339
AfaI	GTAC	2 cut(s)	366, 374
AfiI	CCNNNNNNNGG	3 cut(s)	38, 102, 382
AluBI	AGCT	1 cut(s)	338
AluI	AGCT	1 cut(s)	338
Alw21I	GWGCWC	1 cut(s)	249
Alw26I	GTCTC	1 cut(s)	154
AlwI	GGATC	5 cut(s)	227, 254, 267, 307, 339
Ama87I	CYCGRG	1 cut(s)	324
AoxI	GGCC	3 cut(s)	28, 129, 137
Asp718I	GGTACC	1 cut(s)	364
AspLEI	GCGC	1 cut(s)	230
AspS9I	GGNCC	4 cut(s)	29, 129, 137, 192
AvaI	CYCGRG	1 cut(s)	324
AvaII	GGWCC	1 cut(s)	192
BaeI	ACNNNNGTAYC	4 cut(s)	356, 356, 389, 389
BamHI	GGATCC	1 cut(s)	259
BanI	GGYRCC	1 cut(s)	364
Bbv12I	GWGCWC	1 cut(s)	249
BceAI	ACGGC	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	154
BfaI	CTAG	3 cut(s)	53, 98, 335
BfuAI	ACCTGC	1 cut(s)	308
BglII	AGATCT	1 cut(s)	265
Bme18I	GGWCC	1 cut(s)	192
BmeT110I	CYCGRG	1 cut(s)	324
BmgT120I	GGNCC	4 cut(s)	29, 129, 137, 192
BmiI	GGNNCC	3 cut(s)	261, 290, 366
BsaBI	GATNNNNATC	1 cut(s)	264
BsaI	GGTCTC	1 cut(s)	154
BsaJI	CCNNGG	1 cut(s)	12
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 102, 382
Bse1I	ACTGG	1 cut(s)	62
Bse8I	GATNNNNATC	1 cut(s)	264
BseDI	CCNNGG	1 cut(s)	12
BseJI	GATNNNNATC	1 cut(s)	264
BseLI	CCNNNNNNNGG	3 cut(s)	38, 102, 382
BseNI	ACTGG	1 cut(s)	62
BseRI	GAGGAG	1 cut(s)	63
Bsh1236I	CGCG	2 cut(s)	228, 251
BshFI	GGCC	3 cut(s)	30, 131, 139
BshNI	GGYRCC	1 cut(s)	364
BsiHKAI	GWGCWC	1 cut(s)	249
BsiHKCI	CYCGRG	1 cut(s)	324
BslI	CCNNNNNNNGG	3 cut(s)	38, 102, 382
BsmAI	GTCTC	1 cut(s)	154
BsnI	GGCC	3 cut(s)	30, 131, 139
Bso31I	GGTCTC	1 cut(s)	154
BsoBI	CYCGRG	1 cut(s)	324
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp143I	GATC	6 cut(s)	232, 259, 265, 307, 312, 331
BspACI	CCGC	5 cut(s)	4, 42, 88, 124, 226
BspANI	GGCC	3 cut(s)	30, 131, 139
BspFNI	CGCG	2 cut(s)	228, 251
BspLI	GGNNCC	3 cut(s)	261, 290, 366
BspMI	ACCTGC	1 cut(s)	308
BspPI	GGATC	5 cut(s)	227, 254, 267, 307, 339
BspT107I	GGYRCC	1 cut(s)	364
BspTNI	GGTCTC	1 cut(s)	154
BsrI	ACTGG	1 cut(s)	62
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	6 cut(s)	232, 259, 265, 307, 312, 331
BstC8I	GCNNGC	1 cut(s)	249
BstEII	GGTNACC	1 cut(s)	7
BstFNI	CGCG	2 cut(s)	228, 251
BstHHI	GCGC	1 cut(s)	230
BstKTI	GATC	6 cut(s)	235, 262, 268, 310, 315, 334
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	6 cut(s)	232, 259, 265, 307, 312, 331
BstMWI	GCNNNNNNNGC	1 cut(s)	225
BstPI	GGTNACC	1 cut(s)	7
BstUI	CGCG	2 cut(s)	228, 251
BstX2I	RGATCY	4 cut(s)	259, 265, 312, 331
BstYI	RGATCY	4 cut(s)	259, 265, 312, 331
BsuRI	GGCC	3 cut(s)	30, 131, 139
BtgZI	GCGATG	1 cut(s)	33
BveI	ACCTGC	1 cut(s)	308
Cac8I	GCNNGC	1 cut(s)	249
CfoI	GCGC	1 cut(s)	230
Cfr13I	GGNCC	4 cut(s)	29, 129, 137, 192
CseI	GACGC	1 cut(s)	240
Csp6I	GTAC	2 cut(s)	365, 373
CviJI	RGCY	6 cut(s)	30, 52, 131, 139, 158, 338
CviKI_1	RGCY	6 cut(s)	30, 52, 131, 139, 158, 338
CviQI	GTAC	2 cut(s)	365, 373
DpnI	GATC	6 cut(s)	234, 261, 267, 309, 314, 333
DpnII	GATC	6 cut(s)	232, 259, 265, 307, 312, 331
EciI	GGCGGA	1 cut(s)	57
Eco31I	GGTCTC	1 cut(s)	154
Eco47I	GGWCC	1 cut(s)	192
Eco88I	CYCGRG	1 cut(s)	324
Eco91I	GGTNACC	1 cut(s)	7
EcoO65I	GGTNACC	1 cut(s)	7
FaiI	YATR	2 cut(s)	201, 354
FauI	CCCGC	1 cut(s)	81
FblI	GTMKAC	1 cut(s)	273
FspBI	CTAG	3 cut(s)	53, 98, 335
GlaI	GCGC	1 cut(s)	229
HaeIII	GGCC	3 cut(s)	30, 131, 139
HgaI	GACGC	1 cut(s)	240
HhaI	GCGC	1 cut(s)	230
Hin6I	GCGC	1 cut(s)	228
HinP1I	GCGC	1 cut(s)	228
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188I	TCNGA	1 cut(s)	312
Hpy188III	TCNNGA	2 cut(s)	236, 263
Hpy8I	GTNNAC	1 cut(s)	274
Hpy99I	CGWCG	1 cut(s)	256
HpyCH4IV	ACGT	2 cut(s)	318, 389
HpyCH4V	TGCA	2 cut(s)	282, 303
HpyF10VI	GCNNNNNNNGC	1 cut(s)	225
HpySE526I	ACGT	2 cut(s)	318, 389
HspAI	GCGC	1 cut(s)	228
KpnI	GGTACC	1 cut(s)	368
Kzo9I	GATC	6 cut(s)	232, 259, 265, 307, 312, 331
LmnI	GCTCC	1 cut(s)	76
LpnPI	CCDG	7 cut(s)	43, 208, 249, 276, 313, 347, 389
MaeI	CTAG	3 cut(s)	53, 98, 335
MaeII	ACGT	2 cut(s)	318, 389
MaeIII	GTNAC	2 cut(s)	7, 319
MalI	GATC	6 cut(s)	234, 261, 267, 309, 314, 333
MboI	GATC	6 cut(s)	232, 259, 265, 307, 312, 331
MflI	RGATCY	4 cut(s)	259, 265, 312, 331
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	1 cut(s)	24
MnlI	CCTC	4 cut(s)	7, 38, 84, 359
MseI	TTAA	2 cut(s)	177, 345
MvnI	CGCG	2 cut(s)	228, 251
MwoI	GCNNNNNNNGC	1 cut(s)	225
NdeII	GATC	6 cut(s)	232, 259, 265, 307, 312, 331
NlaIV	GGNNCC	3 cut(s)	261, 290, 366
NmeAIII	GCCGAG	1 cut(s)	64
NmuCI	GTSAC	1 cut(s)	7
PflMI	CCANNNNNTGG	1 cut(s)	38
PspEI	GGTNACC	1 cut(s)	7
PspN4I	GGNNCC	3 cut(s)	261, 290, 366
PspPI	GGNCC	4 cut(s)	29, 129, 137, 192
PsuI	RGATCY	4 cut(s)	259, 265, 312, 331
RsaI	GTAC	2 cut(s)	366, 374
RsaNI	GTAC	2 cut(s)	365, 373
SaqAI	TTAA	2 cut(s)	177, 345
Sau3AI	GATC	6 cut(s)	232, 259, 265, 307, 312, 331
Sau96I	GGNCC	4 cut(s)	29, 129, 137, 192
SduI	GDGCHC	1 cut(s)	249
SinI	GGWCC	1 cut(s)	192
Sse9I	AATT	1 cut(s)	24
SsiI	CCGC	5 cut(s)	4, 42, 88, 124, 226
SspMI	CTAG	3 cut(s)	53, 98, 335
TaiI	ACGT	2 cut(s)	321, 392
TasI	AATT	1 cut(s)	24
Tru1I	TTAA	2 cut(s)	177, 345
Tru9I	TTAA	2 cut(s)	177, 345
TseFI	GTSAC	1 cut(s)	7
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	1 cut(s)	36
Van91I	CCANNNNNTGG	1 cut(s)	38
VpaK11BI	GGWCC	1 cut(s)	192
XmiI	GTMKAC	1 cut(s)	273
XspI	CTAG	3 cut(s)	53, 98, 335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.