Rroxscaffold_5G00374690

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
N/A
Physical Location & Seq
Reverse (-)
55679483 .. 55686120
6638 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00374690.1

Sequence Viewer

Length: 381 bp
ATGACTACTTTGGAAGGTGTGGATCGTCTGTTTTGTGGTTCTTCAGCTGCTTTTCTATCCTTGGAGAAGCTAACACTTTGTGACATGCCGGAGTTGAGTAACTCGGTCGGGACTACTTCGCACGCTGATGATGTCCGTCAGAATTTGTTTGAATCAGAATCAAGTTTAGGCGAAAGACTAGCTTTTTCGGCCTTTCAGAGGTCTCCTCAGTGTTGTGGCACTGGTAGTGATGATTTGAAAAGCTCTTTCCATGTTCCATGTTTTGGTCATAGTGGGAAACATAATTACAATAAGTACATGAGGATGACTATCAAACAAATGGATATTCCAACAAAATATGAATGGCTCCTTTTCGAACCCTATGAAATTGGCTTGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

126

Amino Acids

14.12

Weight (kDa)

5.25

Isoelectric Point (pI)

36.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 263
AclWI GGATC 1 cut(s) 30
AcsI RAATTY 1 cut(s) 142
AcuI CTGAAG 1 cut(s) 27
AdeI CACNNNGTG 1 cut(s) 80
AfaI GTAC 1 cut(s) 296
AfiI CCNNNNNNNGG 2 cut(s) 198, 263
AgsI TTSAA 2 cut(s) 152, 238
AluBI AGCT 4 cut(s) 47, 70, 182, 243
AluI AGCT 4 cut(s) 47, 70, 182, 243
Alw26I GTCTC 1 cut(s) 207
AlwI GGATC 1 cut(s) 30
AoxI GGCC 1 cut(s) 189
ApeKI GCWGC 1 cut(s) 47
ApoI RAATTY 1 cut(s) 142
AsuII TTCGAA 1 cut(s) 354
BbvI GCAGC 1 cut(s) 34
BcoDI GTCTC 1 cut(s) 207
BfaI CTAG 1 cut(s) 179
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
BmiI GGNNCC 1 cut(s) 347
BplI GAGNNNNNCTC 2 cut(s) 190, 222
Bpu14I TTCGAA 1 cut(s) 354
BsaBI GATNNNNATC 1 cut(s) 308
BsaI GGTCTC 1 cut(s) 207
BsaJI CCNNGG 1 cut(s) 60
Bsc4I CCNNNNNNNGG 2 cut(s) 198, 263
Bse1I ACTGG 1 cut(s) 226
Bse8I GATNNNNATC 1 cut(s) 308
BseDI CCNNGG 1 cut(s) 60
BseGI GGATG 1 cut(s) 309
BseJI GATNNNNATC 1 cut(s) 308
BseLI CCNNNNNNNGG 2 cut(s) 198, 263
BseMII CTCAG 1 cut(s) 221
BseNI ACTGG 1 cut(s) 226
BseRI GAGGAG 1 cut(s) 195
BseXI GCAGC 1 cut(s) 34
Bsh1285I CGRYCG 1 cut(s) 108
BshFI GGCC 1 cut(s) 191
BsiEI CGRYCG 1 cut(s) 108
BsiSI CCGG 1 cut(s) 89
BslFI GGGAC 1 cut(s) 124
BslI CCNNNNNNNGG 2 cut(s) 198, 263
BsmAI GTCTC 1 cut(s) 207
BsmFI GGGAC 1 cut(s) 124
BsnI GGCC 1 cut(s) 191
Bso31I GGTCTC 1 cut(s) 207
Bsp119I TTCGAA 1 cut(s) 354
Bsp143I GATC 1 cut(s) 22
BspANI GGCC 1 cut(s) 191
BspCNI CTCAG 1 cut(s) 220
BspLI GGNNCC 1 cut(s) 347
BspPI GGATC 1 cut(s) 30
BspT104I TTCGAA 1 cut(s) 354
BspTNI GGTCTC 1 cut(s) 207
BsrI ACTGG 1 cut(s) 226
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 1 cut(s) 22
BssT1I CCWWGG 1 cut(s) 60
BstBI TTCGAA 1 cut(s) 354
BstC8I GCNNGC 1 cut(s) 123
BstDEI CTNAG 1 cut(s) 207
BstENI CCTNNNNNAGG 1 cut(s) 196
BstF5I GGATG 1 cut(s) 309
BstKTI GATC 1 cut(s) 25
BstMAI GTCTC 1 cut(s) 207
BstMBI GATC 1 cut(s) 22
BstMCI CGRYCG 1 cut(s) 108
BstMWI GCNNNNNNNGC 1 cut(s) 188
BstNSI RCATGY 1 cut(s) 88
BstV1I GCAGC 1 cut(s) 34
BsuRI GGCC 1 cut(s) 191
BtsCI GGATG 1 cut(s) 309
BtsIMutI CAGTG 2 cut(s) 215, 219
Cac8I GCNNGC 1 cut(s) 123
Csp6I GTAC 1 cut(s) 295
CviAII CATG 4 cut(s) 85, 251, 258, 298
CviJI RGCY 7 cut(s) 47, 70, 182, 191, 243, 346, 372
CviKI_1 RGCY 7 cut(s) 47, 70, 182, 191, 243, 346, 372
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 1 cut(s) 207
DpnI GATC 1 cut(s) 24
DpnII GATC 1 cut(s) 22
DraIII CACNNNGTG 1 cut(s) 80
Eco130I CCWWGG 1 cut(s) 60
Eco31I GGTCTC 1 cut(s) 207
Eco57I CTGAAG 1 cut(s) 27
EcoNI CCTNNNNNAGG 1 cut(s) 196
EcoT14I CCWWGG 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 60
FaeI CATG 4 cut(s) 88, 254, 261, 301
FaiI YATR 9 cut(s) 86, 252, 259, 270, 282, 299, 339, 363, 379
FalI AAGNNNNNCTT 2 cut(s) 166, 198
FaqI GGGAC 1 cut(s) 124
FatI CATG 4 cut(s) 84, 250, 257, 297
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 1 cut(s) 316
Fsp4HI GCNGC 1 cut(s) 48
FspBI CTAG 1 cut(s) 179
GluI GCNGC 1 cut(s) 48
HaeIII GGCC 1 cut(s) 191
HapII CCGG 1 cut(s) 89
Hin1II CATG 4 cut(s) 88, 254, 261, 301
HinfI GANTC 2 cut(s) 152, 158
HpaII CCGG 1 cut(s) 89
Hpy188I TCNGA 3 cut(s) 141, 157, 198
Hpy188III TCNNGA 1 cut(s) 109
HpyAV CCTTC 1 cut(s) 8
HpyF10VI GCNNNNNNNGC 1 cut(s) 188
HpyF3I CTNAG 1 cut(s) 207
Hsp92II CATG 4 cut(s) 88, 254, 261, 301
Kzo9I GATC 1 cut(s) 22
LmnI GCTCC 1 cut(s) 351
LpnPI CCDG 2 cut(s) 102, 207
Lsp1109I GCAGC 1 cut(s) 34
MaeI CTAG 1 cut(s) 179
MaeIII GTNAC 2 cut(s) 80, 98
MalI GATC 1 cut(s) 24
MboI GATC 1 cut(s) 22
MboII GAAGA 1 cut(s) 33
MluCI AATT 3 cut(s) 142, 283, 366
MmeI TCCRAC 1 cut(s) 353
MnlI CCTC 3 cut(s) 192, 216, 294
MslI CAYNNNNRTG 2 cut(s) 126, 302
MspA1I CMGCKG 1 cut(s) 47
MspI CCGG 1 cut(s) 89
MwoI GCNNNNNNNGC 1 cut(s) 188
NdeII GATC 1 cut(s) 22
NlaIII CATG 4 cut(s) 88, 254, 261, 301
NlaIV GGNNCC 1 cut(s) 347
NmuCI GTSAC 1 cut(s) 80
NspI RCATGY 1 cut(s) 88
NspV TTCGAA 1 cut(s) 354
PfeI GAWTC 2 cut(s) 152, 158
PflMI CCANNNNNTGG 1 cut(s) 263
PkrI GCNGC 1 cut(s) 49
PspN4I GGNNCC 1 cut(s) 347
PvuII CAGCTG 1 cut(s) 47
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
RseI CAYNNNNRTG 2 cut(s) 126, 302
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 1 cut(s) 22
SetI ASST 6 cut(s) 19, 49, 72, 184, 203, 245
SfuI TTCGAA 1 cut(s) 354
SmiMI CAYNNNNRTG 2 cut(s) 126, 302
Sse9I AATT 3 cut(s) 142, 283, 366
SspMI CTAG 1 cut(s) 179
StyI CCWWGG 1 cut(s) 60
TaqI TCGA 1 cut(s) 354
TaqII GACCGA 1 cut(s) 94
TasI AATT 3 cut(s) 142, 283, 366
TatI WGTACW 1 cut(s) 294
TfiI GAWTC 2 cut(s) 152, 158
TscAI CASTG 2 cut(s) 215, 226
TseFI GTSAC 1 cut(s) 80
TseI GCWGC 1 cut(s) 47
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 2 cut(s) 354, 378
TspGWI ACGGA 1 cut(s) 125
TspRI CASTG 2 cut(s) 215, 226
Van91I CCANNNNNTGG 1 cut(s) 263
XagI CCTNNNNNAGG 1 cut(s) 196
XapI RAATTY 1 cut(s) 142
XceI RCATGY 1 cut(s) 88
XspI CTAG 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.