Rroxscaffold_5G00375320

C-type lectin receptor-like tyrosine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
N/A
Physical Location & Seq
Reverse (-)
56149336 .. 56150879
1544 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00375320.1

Sequence Viewer

Length: 201 bp
ATGGTTCTGTTGGAAGGAAAGCTGCAATTGGTTTTGCTTCTGATTGTTTGCGGTTCATGTGTTTCAGATAAGGTTCATACTGATTTGGGGAAATCTTCTATTAGGATATTCTCTGTTAAATCAGCATTCACTAAGCTTTGCAGTTTTGAAGTGAGTAGCCTAATTACTCAAGTTGTGAGATTTGAAGAAGAAGAAGAATAG

Protein Analysis

66

Amino Acids

7.33

Weight (kDa)

5.3

Isoelectric Point (pI)

31.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 51
AgsI TTSAA 2 cut(s) 149, 185
AluBI AGCT 2 cut(s) 22, 136
AluI AGCT 2 cut(s) 22, 136
ApeKI GCWGC 1 cut(s) 22
BbvI GCAGC 1 cut(s) 9
BisI GCNGC 1 cut(s) 23
BlsI GCNGC 1 cut(s) 24
BpuEI CTTGAG 1 cut(s) 153
BseXI GCAGC 1 cut(s) 9
BsmI GAATGC 1 cut(s) 125
BspACI CCGC 1 cut(s) 51
BstDEI CTNAG 1 cut(s) 132
BstV1I GCAGC 1 cut(s) 9
CviAII CATG 1 cut(s) 57
CviJI RGCY 3 cut(s) 22, 136, 159
CviKI_1 RGCY 3 cut(s) 22, 136, 159
DdeI CTNAG 1 cut(s) 132
FaeI CATG 1 cut(s) 60
FaiI YATR 2 cut(s) 58, 78
FatI CATG 1 cut(s) 56
Fnu4HI GCNGC 1 cut(s) 23
Fsp4HI GCNGC 1 cut(s) 23
FspEI CC 8 cut(s) 14, 36, 56, 71, 72, 73, 88, 173
GluI GCNGC 1 cut(s) 23
Hin1II CATG 1 cut(s) 60
HindIII AAGCTT 1 cut(s) 134
Hpy188I TCNGA 2 cut(s) 42, 67
HpyAV CCTTC 1 cut(s) 8
HpyCH4V TGCA 2 cut(s) 25, 141
HpyF3I CTNAG 1 cut(s) 132
Hsp92II CATG 1 cut(s) 60
Lsp1109I GCAGC 1 cut(s) 9
MboII GAAGA 3 cut(s) 87, 197, 200
MfeI CAATTG 1 cut(s) 26
MluCI AATT 2 cut(s) 26, 162
MseI TTAA 1 cut(s) 117
MunI CAATTG 1 cut(s) 26
Mva1269I GAATGC 1 cut(s) 125
NlaIII CATG 1 cut(s) 60
PctI GAATGC 1 cut(s) 125
PkrI GCNGC 1 cut(s) 24
SaqAI TTAA 1 cut(s) 117
SatI GCNGC 1 cut(s) 23
SetI ASST 3 cut(s) 24, 75, 138
SgeI CNNG 2 cut(s) 69, 182
SmlI CTYRAG 1 cut(s) 168
SmoI CTYRAG 1 cut(s) 168
Sse9I AATT 2 cut(s) 26, 162
SsiI CCGC 1 cut(s) 51
TasI AATT 2 cut(s) 26, 162
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TseI GCWGC 1 cut(s) 22
TspDTI ATGAA 2 cut(s) 45, 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.