Rroxscaffold_5G00377590

proline-rich receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
N/A
Physical Location & Seq
Reverse (-)
58186549 .. 58191353
4805 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00377590.1

Sequence Viewer

Length: 1203 bp
ATGGCAACCACATCGCCATCTCCGAACTCATCTCCTTCAGCTGTGCCACCAGCTTCTAGTGCTAGTTCCACACCACCACCACAGCCCAATGTGGAATCACCAGATTCCTCAAACACTACAACTCCATCTCCACCGCCTGATGTTCCATCAGCTCCTCCTCCAACTGCATCATCACCCCCTCCAATTCCATCCTCCCCTTCCGTACCTACACCATCACCTCCAATGAATCAACAATCTGATCCACCAGCCTCACCGCCACCGCCTTCTTCATCCAATGTGCCTCCACCATCTTCAAATTCTCCACCCCCGCCATCATCTGACCCACCAAAGAGTTCACCTTCCCCACCACCACCAACGTCTGATCCACCTGCAAGTTCACCTCCCCCACCGCAGCCAGTCAGCTCACCTCACCCACCAGAGCCAGTGAGTTCACCTCCACCACCAACTTCAAGTCCACCTAAGACTTCACCTCCACCTCCATCATCAACGCCACCCAAAAGTTCACCTCCACCTCCATCATCAACACCGCCCAAAAGTTCGCCTCCACCACCATCAGAGCCACCTGAGAAATCTCCTCCACCTCCACCAGCAAATCCCCCTGAAACATCACCACCGCCTCCACCAACATCAAAGCCCCCTGAAACGTCACCACCGCCGCCACCAACATCAAAGCCACCTGAGAAATCACCACCACCTCCAGAATCTGAGCCACCCAAAAGTTCACCTCCACCACCAGCATCAACTCCGCCTAAAAGTTCACCTCCTCCACAGGCATCAGAGCCTCCAAGCAGTTCACCCCCACCTTCAAGCCCCAACCCTCCCCCTCCACCCGGTTCTCAACCAACCCCTGCAGCCCCACCTCCGAAGTCATCAGCTCCACCACCCACAATACGACTCTCACCACCTCCACCCTCAGATGATGCTCCACCACCAACTACTCAAATTCCAAGCCCACCATCAAATATTCCAAGTTCAAACAATTCCAATCCTAATGTACCACCAAGTTCAAATGCCACAAGTAATATGGGCCTTAGCACTGGAGGTGCAGTGGCAATTAGTGTAGTGGCTGGGATAATAGTGCTTAGCTTCATTGCATTCGCTGTATGGTGCATGAGGAGGAAGCAAAAGAAAAAGGTTTCTGGATTTGGAGGTTATGTTATGCCATCGCCGATGGTATCTTCTCCCCAATCAGGATATAGTTGA

Protein Analysis

400

Amino Acids

39.58

Weight (kDa)

7.79

Isoelectric Point (pI)

134.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 376
Acc36I ACCTGC 1 cut(s) 376
AclWI GGATC 2 cut(s) 233, 356
AcsI RAATTY 2 cut(s) 295, 942
AcuI CTGAAG 1 cut(s) 21
AfaI GTAC 2 cut(s) 204, 996
AfiI CCNNNNNNNGG 2 cut(s) 830, 1190
AgsI TTSAA 5 cut(s) 294, 450, 807, 975, 1008
AluBI AGCT 6 cut(s) 41, 53, 152, 402, 875, 1086
AluI AGCT 6 cut(s) 41, 53, 152, 402, 875, 1086
AlwI GGATC 2 cut(s) 233, 356
AlwNI CAGNNNCTG 1 cut(s) 704
AoxI GGCC 1 cut(s) 1027
ApeKI GCWGC 2 cut(s) 391, 851
ApoI RAATTY 2 cut(s) 295, 942
AspS9I GGNCC 1 cut(s) 1027
AsuC2I CCSGG 1 cut(s) 831
BbvI GCAGC 2 cut(s) 403, 863
BcgI CGANNNNNNTGC 1 cut(s) 28
BcnI CCSGG 1 cut(s) 831
BfaI CTAG 2 cut(s) 57, 63
BfmI CTRYAG 1 cut(s) 849
BfuAI ACCTGC 1 cut(s) 376
BisI GCNGC 3 cut(s) 392, 656, 852
BlpI GCTNAGC 1 cut(s) 1082
BlsI GCNGC 3 cut(s) 393, 657, 853
Bme1390I CCNGG 1 cut(s) 831
BmgT120I GGNCC 1 cut(s) 1027
BmrFI CCNGG 1 cut(s) 831
BmsI GCATC 4 cut(s) 176, 746, 782, 910
BplI GAGNNNNNCTC 2 cut(s) 418, 450
BpmI CTGGAG 2 cut(s) 681, 1059
Bpu10I CCTNAGC 1 cut(s) 1031
Bpu1102I GCTNAGC 1 cut(s) 1082
BpuMI CCSGG 1 cut(s) 831
Bsc4I CCNNNNNNNGG 2 cut(s) 830, 1190
Bse1I ACTGG 3 cut(s) 395, 422, 1042
Bse3DI GCAATG 1 cut(s) 1089
BseGI GGATG 2 cut(s) 188, 269
BseLI CCNNNNNNNGG 2 cut(s) 830, 1190
BseMI GCAATG 1 cut(s) 1089
BseMII CTCAG 4 cut(s) 555, 669, 696, 927
BseNI ACTGG 3 cut(s) 395, 422, 1042
BseRI GAGGAG 5 cut(s) 144, 147, 564, 753, 1129
BseXI GCAGC 2 cut(s) 403, 863
BseYI CCCAGC 1 cut(s) 1067
BsgI GTGCAG 1 cut(s) 1065
BshFI GGCC 1 cut(s) 1029
BsiSI CCGG 1 cut(s) 831
BslI CCNNNNNNNGG 2 cut(s) 830, 1190
BsmI GAATGC 1 cut(s) 1094
BsnI GGCC 1 cut(s) 1029
Bsp143I GATC 2 cut(s) 238, 361
Bsp1720I GCTNAGC 1 cut(s) 1082
BspANI GGCC 1 cut(s) 1029
BspCNI CTCAG 4 cut(s) 556, 670, 697, 926
BspMAI CTGCAG 1 cut(s) 853
BspMI ACCTGC 1 cut(s) 376
BspPI GGATC 2 cut(s) 233, 356
BsrDI GCAATG 1 cut(s) 1089
BsrI ACTGG 3 cut(s) 395, 422, 1042
BssMI GATC 2 cut(s) 238, 361
BstDEI CTNAG 7 cut(s) 459, 564, 678, 705, 913, 1031, 1082
BstF5I GGATG 2 cut(s) 188, 269
BstKTI GATC 2 cut(s) 241, 364
BstMBI GATC 2 cut(s) 238, 361
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstSCI CCNGG 1 cut(s) 829
BstSFI CTRYAG 1 cut(s) 849
BstV1I GCAGC 2 cut(s) 403, 863
BsuRI GGCC 1 cut(s) 1029
BtgZI GCGATG 1 cut(s) 1149
BtsCI GGATG 2 cut(s) 188, 269
BtsI GCAGTG 1 cut(s) 1053
BtsIMutI CAGTG 3 cut(s) 429, 1035, 1053
BveI ACCTGC 1 cut(s) 376
CaiI CAGNNNCTG 1 cut(s) 704
Cfr13I GGNCC 1 cut(s) 1027
Csp6I GTAC 2 cut(s) 203, 995
CviAII CATG 1 cut(s) 1111
CviQI GTAC 2 cut(s) 203, 995
DdeI CTNAG 7 cut(s) 459, 564, 678, 705, 913, 1031, 1082
DpnI GATC 2 cut(s) 240, 363
DpnII GATC 2 cut(s) 238, 361
EciI GGCGGA 1 cut(s) 735
Eco57I CTGAAG 1 cut(s) 21
FaeI CATG 1 cut(s) 1114
FaiI YATR 6 cut(s) 1025, 1105, 1112, 1155, 1160, 1197
FatI CATG 1 cut(s) 1110
FauI CCCGC 1 cut(s) 315
Fnu4HI GCNGC 3 cut(s) 392, 656, 852
FokI GGATG 2 cut(s) 175, 256
Fsp4HI GCNGC 3 cut(s) 392, 656, 852
FspBI CTAG 2 cut(s) 57, 63
GluI GCNGC 3 cut(s) 392, 656, 852
GsaI CCCAGC 1 cut(s) 1071
GsuI CTGGAG 2 cut(s) 681, 1059
HaeIII GGCC 1 cut(s) 1029
HapII CCGG 1 cut(s) 831
Hin1II CATG 1 cut(s) 1114
HinfI GANTC 5 cut(s) 95, 104, 226, 701, 894
HpaII CCGG 1 cut(s) 831
Hpy166II GTNNAC 8 cut(s) 335, 377, 431, 455, 503, 722, 758, 794
Hpy188I TCNGA 9 cut(s) 24, 238, 319, 361, 556, 706, 778, 864, 916
Hpy188III TCNNGA 3 cut(s) 698, 1140, 1191
Hpy8I GTNNAC 8 cut(s) 335, 377, 431, 455, 503, 722, 758, 794
HpyAV CCTTC 5 cut(s) 45, 207, 273, 348, 813
HpyCH4IV ACGT 2 cut(s) 356, 644
HpyCH4V TGCA 6 cut(s) 167, 371, 851, 1046, 1094, 1110
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpyF3I CTNAG 7 cut(s) 459, 564, 678, 705, 913, 1031, 1082
HpySE526I ACGT 2 cut(s) 356, 644
Hsp92II CATG 1 cut(s) 1114
Kzo9I GATC 2 cut(s) 238, 361
LmnI GCTCC 3 cut(s) 157, 880, 928
Lsp1109I GCAGC 2 cut(s) 403, 863
LweI GCATC 4 cut(s) 176, 746, 782, 910
MaeI CTAG 2 cut(s) 57, 63
MaeII ACGT 2 cut(s) 356, 644
MaeIII GTNAC 1 cut(s) 645
MalI GATC 2 cut(s) 240, 363
MboI GATC 2 cut(s) 238, 361
MboII GAAGA 3 cut(s) 258, 282, 1170
MluCI AATT 5 cut(s) 183, 295, 942, 979, 1053
MlyI GAGTC 1 cut(s) 888
MmeI TCCRAC 1 cut(s) 185
MspA1I CMGCKG 1 cut(s) 41
MspI CCGG 1 cut(s) 831
MspR9I CCNGG 1 cut(s) 831
Mva1269I GAATGC 1 cut(s) 1094
MwoI GCNNNNNNNGC 1 cut(s) 59
NciI CCSGG 1 cut(s) 831
NdeII GATC 2 cut(s) 238, 361
NlaIII CATG 1 cut(s) 1114
NmuCI GTSAC 1 cut(s) 645
PaqCI CACCTGC 1 cut(s) 376
PcsI WCGNNNNNNNCGW 1 cut(s) 20
PctI GAATGC 1 cut(s) 1094
PfeI GAWTC 4 cut(s) 95, 104, 226, 701
PkrI GCNGC 3 cut(s) 393, 657, 853
PleI GAGTC 1 cut(s) 888
PpsI GAGTC 1 cut(s) 888
PspFI CCCAGC 1 cut(s) 1067
PspPI GGNCC 1 cut(s) 1027
PstI CTGCAG 1 cut(s) 853
PstNI CAGNNNCTG 1 cut(s) 704
PvuII CAGCTG 1 cut(s) 41
RsaI GTAC 2 cut(s) 204, 996
RsaNI GTAC 2 cut(s) 203, 995
SatI GCNGC 3 cut(s) 392, 656, 852
Sau3AI GATC 2 cut(s) 238, 361
Sau96I GGNCC 1 cut(s) 1027
SchI GAGTC 1 cut(s) 888
ScrFI CCNGG 1 cut(s) 831
SfaNI GCATC 4 cut(s) 176, 746, 782, 910
SfcI CTRYAG 1 cut(s) 849
Sse9I AATT 5 cut(s) 183, 295, 942, 979, 1053
SspI AATATT 1 cut(s) 964
SspMI CTAG 2 cut(s) 57, 63
StyD4I CCNGG 1 cut(s) 829
TaiI ACGT 2 cut(s) 359, 647
TasI AATT 5 cut(s) 183, 295, 942, 979, 1053
TauI GCSGC 1 cut(s) 658
TfiI GAWTC 4 cut(s) 95, 104, 226, 701
TscAI CASTG 3 cut(s) 429, 1042, 1053
TseFI GTSAC 1 cut(s) 645
TseI GCWGC 2 cut(s) 391, 851
Tsp45I GTSAC 1 cut(s) 645
TspDTI ATGAA 3 cut(s) 239, 258, 1078
TspGWI ACGGA 1 cut(s) 190
TspRI CASTG 3 cut(s) 429, 1042, 1053
XapI RAATTY 2 cut(s) 295, 942
XcmI CCANNNNNNNNNTGG 1 cut(s) 1021
XspI CTAG 2 cut(s) 57, 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.