Rroxscaffold_5G00385570

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
N/A
Physical Location & Seq
Reverse (-)
64603887 .. 64606460
2574 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00385570.1

Sequence Viewer

Length: 243 bp
ATGACCAAAGTAGGTGCTAAAGCCGGTTATGTCTTCGGCAGCCTCAAGTCGATGTGGGATCGCGATGAAATCATGAATGTTTTCAAGCATGATAAGCTTAATCTTGAGCACCGTATTTCACCGACTAAGCTTCATGACTCGATTGGGAACTTGAACACATTAATCCACTTGAACCTGCAACGGTGTTCAAAGCTTGTTGAACTTCCAAGTGATGTCTCCGCCCGAGAAAGCTCGAGTACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

80

Amino Acids

9.01

Weight (kDa)

8.89

Isoelectric Point (pI)

22.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 183
AccII CGCG 1 cut(s) 63
AciI CCGC 1 cut(s) 219
AclWI GGATC 1 cut(s) 66
AfaI GTAC 1 cut(s) 238
AgsI TTSAA 5 cut(s) 85, 154, 172, 189, 200
AluBI AGCT 4 cut(s) 97, 130, 193, 231
AluI AGCT 4 cut(s) 97, 130, 193, 231
Alw21I GWGCWC 1 cut(s) 111
Alw26I GTCTC 1 cut(s) 220
AlwI GGATC 1 cut(s) 66
Ama87I CYCGRG 2 cut(s) 222, 232
ApeKI GCWGC 1 cut(s) 39
AseI ATTAAT 1 cut(s) 161
Asp700I GAANNNNTTC 1 cut(s) 80
AsuHPI GGTGA 1 cut(s) 111
AvaI CYCGRG 2 cut(s) 222, 232
BbsI GAAGAC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 111
BbvI GCAGC 1 cut(s) 51
BcoDI GTCTC 1 cut(s) 220
BfuAI ACCTGC 1 cut(s) 183
BisI GCNGC 1 cut(s) 40
BlsI GCNGC 1 cut(s) 41
BmeT110I CYCGRG 2 cut(s) 222, 232
BpiI GAAGAC 1 cut(s) 25
BpuEI CTTGAG 2 cut(s) 29, 125
Bse118I RCCGGY 1 cut(s) 23
BseXI GCAGC 1 cut(s) 51
Bsh1236I CGCG 1 cut(s) 63
BsiHKAI GWGCWC 1 cut(s) 111
BsiHKCI CYCGRG 2 cut(s) 222, 232
BsiSI CCGG 1 cut(s) 24
BsmAI GTCTC 1 cut(s) 220
BsoBI CYCGRG 2 cut(s) 222, 232
Bsp1286I GDGCHC 1 cut(s) 111
Bsp143I GATC 1 cut(s) 58
Bsp68I TCGCGA 1 cut(s) 63
BspACI CCGC 1 cut(s) 219
BspFNI CGCG 1 cut(s) 63
BspHI TCATGA 2 cut(s) 72, 133
BspMI ACCTGC 1 cut(s) 183
BspPI GGATC 1 cut(s) 66
BsrFI RCCGGY 1 cut(s) 23
BssAI RCCGGY 1 cut(s) 23
BssMI GATC 1 cut(s) 58
Bst4CI ACNGT 2 cut(s) 113, 183
BstDEI CTNAG 1 cut(s) 126
BstFNI CGCG 1 cut(s) 63
BstKTI GATC 1 cut(s) 61
BstMAI GTCTC 1 cut(s) 220
BstMBI GATC 1 cut(s) 58
BstMWI GCNNNNNNNGC 1 cut(s) 94
BstUI CGCG 1 cut(s) 63
BstV1I GCAGC 1 cut(s) 51
BstV2I GAAGAC 1 cut(s) 25
BtgZI GCGATG 1 cut(s) 78
BtuMI TCGCGA 1 cut(s) 63
BveI ACCTGC 1 cut(s) 183
CciI TCATGA 2 cut(s) 72, 133
Cfr10I RCCGGY 1 cut(s) 23
Csp6I GTAC 1 cut(s) 237
CviAII CATG 3 cut(s) 73, 89, 134
CviJI RGCY 6 cut(s) 23, 42, 97, 130, 193, 231
CviKI_1 RGCY 6 cut(s) 23, 42, 97, 130, 193, 231
CviQI GTAC 1 cut(s) 237
DdeI CTNAG 1 cut(s) 126
DpnI GATC 1 cut(s) 60
DpnII GATC 1 cut(s) 58
EciI GGCGGA 1 cut(s) 208
Eco88I CYCGRG 2 cut(s) 222, 232
FaeI CATG 3 cut(s) 76, 92, 137
FaiI YATR 4 cut(s) 30, 74, 90, 135
FatI CATG 3 cut(s) 72, 88, 133
Fnu4HI GCNGC 1 cut(s) 40
Fsp4HI GCNGC 1 cut(s) 40
GluI GCNGC 1 cut(s) 40
HapII CCGG 1 cut(s) 24
Hin1II CATG 3 cut(s) 76, 92, 137
HindIII AAGCTT 3 cut(s) 95, 128, 191
HinfI GANTC 1 cut(s) 137
HpaII CCGG 1 cut(s) 24
HphI GGTGA 1 cut(s) 111
Hpy188III TCNNGA 4 cut(s) 62, 73, 104, 134
HpyCH4III ACNGT 2 cut(s) 113, 183
HpyCH4V TGCA 1 cut(s) 178
HpyF10VI GCNNNNNNNGC 1 cut(s) 94
HpyF3I CTNAG 1 cut(s) 126
Hsp92II CATG 3 cut(s) 76, 92, 137
Kzo9I GATC 1 cut(s) 58
LpnPI CCDG 2 cut(s) 37, 188
Lsp1109I GCAGC 1 cut(s) 51
MalI GATC 1 cut(s) 60
MboI GATC 1 cut(s) 58
MboII GAAGA 1 cut(s) 25
MhlI GDGCHC 1 cut(s) 111
MlyI GAGTC 1 cut(s) 131
MnlI CCTC 1 cut(s) 53
MroXI GAANNNNTTC 1 cut(s) 80
MseI TTAA 2 cut(s) 99, 161
MspI CCGG 1 cut(s) 24
MvnI CGCG 1 cut(s) 63
MwoI GCNNNNNNNGC 1 cut(s) 94
NdeII GATC 1 cut(s) 58
NlaIII CATG 3 cut(s) 76, 92, 137
NruI TCGCGA 1 cut(s) 63
PaeR7I CTCGAG 1 cut(s) 232
PagI TCATGA 2 cut(s) 72, 133
PdmI GAANNNNTTC 1 cut(s) 80
PkrI GCNGC 1 cut(s) 41
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
PshBI ATTAAT 1 cut(s) 161
PspXI VCTCGAGB 1 cut(s) 232
RruI TCGCGA 1 cut(s) 63
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
SaqAI TTAA 2 cut(s) 99, 161
SatI GCNGC 1 cut(s) 40
Sau3AI GATC 1 cut(s) 58
SchI GAGTC 1 cut(s) 131
SduI GDGCHC 1 cut(s) 111
SetI ASST 7 cut(s) 16, 99, 132, 177, 195, 233, 242
Sfr274I CTCGAG 1 cut(s) 232
SlaI CTCGAG 1 cut(s) 232
SmlI CTYRAG 3 cut(s) 44, 104, 232
SmoI CTYRAG 3 cut(s) 44, 104, 232
SsiI CCGC 1 cut(s) 219
TaaI ACNGT 2 cut(s) 113, 183
TaqI TCGA 3 cut(s) 50, 140, 233
Tru1I TTAA 2 cut(s) 99, 161
Tru9I TTAA 2 cut(s) 99, 161
TseI GCWGC 1 cut(s) 39
TspDTI ATGAA 3 cut(s) 81, 89, 122
VspI ATTAAT 1 cut(s) 161
XhoI CTCGAG 1 cut(s) 232
XmnI GAANNNNTTC 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.