Rroxscaffold_5G00385580

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
N/A
Physical Location & Seq
Reverse (-)
64608155 .. 64618972
10818 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00385580.1

Sequence Viewer

Length: 243 bp
ATGGCAGAGACGCAGAGTGAAAGTTCAAAAACTCTCATCTATGACACAATTCCTTCAACAATCACCAAGAATCTCTACAAGGCACTCCAACGACGCGGCGTACGAGTTTTCCTAGACAATGATGGTTTGGACCGCGGGGACGACATCGGCCTGACTCTACTGGAAGCCATAAACGACTCGGCGGCGGCCATCATCGTCCTGTCGTCGAGGTATGCCGACTCAAGGTCGGGGCCGACCCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

80

Amino Acids

8.7

Weight (kDa)

4.85

Isoelectric Point (pI)

51.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 20 - 75 8.9e-11 TIR domain
TIR_2 PF13676 21 - 76 2.5e-08 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 96, 135
AciI CCGC 5 cut(s) 96, 133, 135, 182, 185
AcoI YGGCCR 1 cut(s) 186
AfaI GTAC 1 cut(s) 102
AfiI CCNNNNNNNGG 1 cut(s) 222
AgsI TTSAA 2 cut(s) 27, 57
AhdI GACNNNNNGTC 1 cut(s) 223
Alw26I GTCTC 1 cut(s) 2
AoxI GGCC 3 cut(s) 148, 186, 230
AspS9I GGNCC 2 cut(s) 130, 230
AsuHPI GGTGA 1 cut(s) 55
AvaII GGWCC 1 cut(s) 130
BccI CCATC 2 cut(s) 116, 197
BcoDI GTCTC 1 cut(s) 2
BfaI CTAG 1 cut(s) 113
BisI GCNGC 3 cut(s) 97, 183, 186
BlsI GCNGC 3 cut(s) 98, 184, 187
Bme18I GGWCC 1 cut(s) 130
BmeRI GACNNNNNGTC 1 cut(s) 223
BmgT120I GGNCC 2 cut(s) 130, 230
BmiI GGNNCC 1 cut(s) 231
BpuEI CTTGAG 1 cut(s) 205
BsaJI CCNNGG 1 cut(s) 133
Bsc4I CCNNNNNNNGG 1 cut(s) 222
Bse1I ACTGG 1 cut(s) 165
BseDI CCNNGG 1 cut(s) 133
BseLI CCNNNNNNNGG 1 cut(s) 222
BseNI ACTGG 1 cut(s) 165
Bsh1236I CGCG 2 cut(s) 96, 135
BshFI GGCC 3 cut(s) 150, 188, 232
BsiWI CGTACG 1 cut(s) 100
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 1 cut(s) 222
BsmAI GTCTC 1 cut(s) 2
BsmBI CGTCTC 1 cut(s) 2
BsmFI GGGAC 1 cut(s) 152
BsnI GGCC 3 cut(s) 150, 188, 232
BspACI CCGC 5 cut(s) 96, 133, 135, 182, 185
BspANI GGCC 3 cut(s) 150, 188, 232
BspFNI CGCG 2 cut(s) 96, 135
BspLI GGNNCC 1 cut(s) 231
BsrI ACTGG 1 cut(s) 165
BssECI CCNNGG 1 cut(s) 133
BstDSI CCRYGG 1 cut(s) 133
BstFNI CGCG 2 cut(s) 96, 135
BstMAI GTCTC 1 cut(s) 2
BstUI CGCG 2 cut(s) 96, 135
BsuRI GGCC 3 cut(s) 150, 188, 232
BtgI CCRYGG 1 cut(s) 133
Cfr13I GGNCC 2 cut(s) 130, 230
Cfr42I CCGCGG 1 cut(s) 136
CseI GACGC 2 cut(s) 19, 102
Csp6I GTAC 1 cut(s) 101
CviJI RGCY 4 cut(s) 150, 167, 188, 232
CviKI_1 RGCY 4 cut(s) 150, 167, 188, 232
CviQI GTAC 1 cut(s) 101
DriI GACNNNNNGTC 1 cut(s) 223
EaeI YGGCCR 1 cut(s) 186
Eam1105I GACNNNNNGTC 1 cut(s) 223
Eco47I GGWCC 1 cut(s) 130
Esp3I CGTCTC 1 cut(s) 2
FaiI YATR 4 cut(s) 42, 170, 213, 241
FaqI GGGAC 1 cut(s) 152
FauI CCCGC 1 cut(s) 128
Fnu4HI GCNGC 3 cut(s) 97, 183, 186
Fsp4HI GCNGC 3 cut(s) 97, 183, 186
FspBI CTAG 1 cut(s) 113
GluI GCNGC 3 cut(s) 97, 183, 186
HaeIII GGCC 3 cut(s) 150, 188, 232
HgaI GACGC 2 cut(s) 19, 102
HinfI GANTC 4 cut(s) 70, 154, 176, 218
HphI GGTGA 1 cut(s) 55
Hpy99I CGWCG 2 cut(s) 96, 208
HpyAV CCTTC 1 cut(s) 63
KspI CCGCGG 1 cut(s) 136
LpnPI CCDG 3 cut(s) 146, 164, 212
MaeI CTAG 1 cut(s) 113
MluCI AATT 1 cut(s) 48
MlyI GAGTC 3 cut(s) 148, 170, 212
MmeI TCCRAC 1 cut(s) 112
MnlI CCTC 1 cut(s) 201
MspA1I CMGCKG 1 cut(s) 135
MvnI CGCG 2 cut(s) 96, 135
NlaIV GGNNCC 1 cut(s) 231
NmeAIII GCCGAG 1 cut(s) 158
PcsI WCGNNNNNNNCGW 1 cut(s) 100
PfeI GAWTC 1 cut(s) 70
Pfl23II CGTACG 1 cut(s) 100
PkrI GCNGC 3 cut(s) 98, 184, 187
PleI GAGTC 3 cut(s) 148, 170, 212
PpsI GAGTC 3 cut(s) 148, 170, 212
PspLI CGTACG 1 cut(s) 100
PspN4I GGNNCC 1 cut(s) 231
PspPI GGNCC 2 cut(s) 130, 230
RsaI GTAC 1 cut(s) 102
RsaNI GTAC 1 cut(s) 101
SacII CCGCGG 1 cut(s) 136
SatI GCNGC 3 cut(s) 97, 183, 186
Sau96I GGNCC 2 cut(s) 130, 230
SchI GAGTC 3 cut(s) 148, 170, 212
SetI ASST 2 cut(s) 212, 227
Sfr303I CCGCGG 1 cut(s) 136
SgrBI CCGCGG 1 cut(s) 136
SinI GGWCC 1 cut(s) 130
SmlI CTYRAG 1 cut(s) 220
SmoI CTYRAG 1 cut(s) 220
Sse9I AATT 1 cut(s) 48
SsiI CCGC 5 cut(s) 96, 133, 135, 182, 185
SspMI CTAG 1 cut(s) 113
TaqI TCGA 1 cut(s) 206
TasI AATT 1 cut(s) 48
TauI GCSGC 3 cut(s) 99, 185, 188
TfiI GAWTC 1 cut(s) 70
VpaK11BI GGWCC 1 cut(s) 130
XspI CTAG 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.