Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

25296428 .. 25300778

Gene Structure 4351 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00402810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGAGCAGCAAAAAGAGATGACCATAAAGCAAATTCGCTTCTTCTGGAATTCTCAAAGGTGGCTAATCAAGAAAGGGGCTGAGGCTCGTGAAGGGGCTGAGGCTGAGTTCGGGAAGTATGTGCTTCTTAAGGTTATCAAGATTTATGATCATTCTTTTGTTCAAGCTCGGAGTCCTGGGAAAATCTTAAGCATCAATATCCCAACATTTGAGGCCCTTACTCAATTTGGAACTGCTACAATCACAGCAAAGAATACTGGTGAAGTGGAAGCATCCTATTGCTTAACATCTTCAATTATGACAGTGAGGACTAGGAAGGAAGACATTAGAGCCATAACAAGGATGTCCACTCTGCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009566 GO:0009567 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0044703 GO:0045026 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0055046 GO:0061024 GO:0061025 GO:0061936 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAP2-GCS1

Protein Analysis

119

Amino Acids

13.65

Weight (kDa)

9.81

Isoelectric Point (pI)

36.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAP2-GCS1	PF10699	50 - 96	2.1e-11	Male gamete fusion factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	355
AcsI	RAATTY	2 cut(s)	33, 49
AfiI	CCNNNNNNNGG	2 cut(s)	339, 354
AflII	CTTAAG	2 cut(s)	128, 187
AgsI	TTSAA	2 cut(s)	164, 294
AjnI	CCWGG	1 cut(s)	175
AluBI	AGCT	1 cut(s)	167
AluI	AGCT	1 cut(s)	167
AoxI	GGCC	1 cut(s)	213
ApeKI	GCWGC	1 cut(s)	7
ApoI	RAATTY	2 cut(s)	33, 49
AspS9I	GGNCC	1 cut(s)	214
AsuHPI	GGTGA	1 cut(s)	272
BauI	CACGAG	1 cut(s)	87
BbsI	GAAGAC	1 cut(s)	327
BbvCI	CCTCAGC	2 cut(s)	81, 99
BbvI	GCAGC	1 cut(s)	19
BciT130I	CCWGG	1 cut(s)	177
BclI	TGATCA	1 cut(s)	148
BfaI	CTAG	1 cut(s)	312
BfrI	CTTAAG	2 cut(s)	128, 187
BisI	GCNGC	1 cut(s)	8
BlsI	GCNGC	1 cut(s)	9
Bme1390I	CCNGG	1 cut(s)	177
BmgT120I	GGNCC	1 cut(s)	214
BmrFI	CCNGG	1 cut(s)	177
BmsI	GCATC	2 cut(s)	201, 281
BpiI	GAAGAC	1 cut(s)	327
Bpu10I	CCTNAGC	2 cut(s)	81, 99
BsaJI	CCNNGG	1 cut(s)	176
Bsc4I	CCNNNNNNNGG	2 cut(s)	339, 354
Bse1I	ACTGG	1 cut(s)	262
BseBI	CCWGG	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	176
BseGI	GGATG	2 cut(s)	272, 348
BseLI	CCNNNNNNNGG	2 cut(s)	339, 354
BseMII	CTCAG	3 cut(s)	72, 90, 96
BseNI	ACTGG	1 cut(s)	262
BseXI	GCAGC	1 cut(s)	19
BshFI	GGCC	1 cut(s)	215
BslI	CCNNNNNNNGG	2 cut(s)	339, 354
BsnI	GGCC	1 cut(s)	215
Bsp143I	GATC	1 cut(s)	148
BspACI	CCGC	1 cut(s)	355
BspANI	GGCC	1 cut(s)	215
BspCNI	CTCAG	3 cut(s)	73, 91, 97
BspTI	CTTAAG	2 cut(s)	128, 187
BsrI	ACTGG	1 cut(s)	262
BssECI	CCNNGG	1 cut(s)	176
BssMI	GATC	1 cut(s)	148
BssSI	CACGAG	1 cut(s)	87
Bst2BI	CACGAG	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	177
Bst4CI	ACNGT	1 cut(s)	304
BstAFI	CTTAAG	2 cut(s)	128, 187
BstDEI	CTNAG	3 cut(s)	81, 99, 105
BstF5I	GGATG	2 cut(s)	272, 348
BstKTI	GATC	1 cut(s)	151
BstMBI	GATC	1 cut(s)	148
BstNI	CCWGG	1 cut(s)	177
BstSCI	CCNGG	1 cut(s)	175
BstV1I	GCAGC	1 cut(s)	19
BstV2I	GAAGAC	1 cut(s)	327
BsuRI	GGCC	1 cut(s)	215
BtsCI	GGATG	2 cut(s)	272, 348
BtsIMutI	CAGTG	1 cut(s)	309
Cfr13I	GGNCC	1 cut(s)	214
CviJI	RGCY	8 cut(s)	64, 80, 86, 98, 104, 167, 215, 332
CviKI_1	RGCY	8 cut(s)	64, 80, 86, 98, 104, 167, 215, 332
DdeI	CTNAG	3 cut(s)	81, 99, 105
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
EcoO109I	RGGNCCY	1 cut(s)	214
EcoRI	GAATTC	1 cut(s)	49
EcoRII	CCWGG	1 cut(s)	175
FaiI	YATR	5 cut(s)	26, 120, 147, 299, 335
FbaI	TGATCA	1 cut(s)	148
Fnu4HI	GCNGC	1 cut(s)	8
FokI	GGATG	2 cut(s)	259, 355
Fsp4HI	GCNGC	1 cut(s)	8
FspBI	CTAG	1 cut(s)	312
GluI	GCNGC	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	215
HinfI	GANTC	1 cut(s)	172
HphI	GGTGA	1 cut(s)	272
Hpy166II	GTNNAC	1 cut(s)	348
Hpy188I	TCNGA	1 cut(s)	171
Hpy188III	TCNNGA	5 cut(s)	46, 70, 89, 112, 139
Hpy8I	GTNNAC	1 cut(s)	348
HpyAV	CCTTC	2 cut(s)	86, 310
HpyCH4III	ACNGT	1 cut(s)	304
HpyF3I	CTNAG	3 cut(s)	81, 99, 105
Ksp22I	TGATCA	1 cut(s)	148
Kzo9I	GATC	1 cut(s)	148
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	4 cut(s)	31, 162, 189, 243
Lsp1109I	GCAGC	1 cut(s)	19
LweI	GCATC	2 cut(s)	201, 281
MaeI	CTAG	1 cut(s)	312
MalI	GATC	1 cut(s)	150
MboI	GATC	1 cut(s)	148
MboII	GAAGA	3 cut(s)	34, 282, 332
MluCI	AATT	4 cut(s)	33, 49, 224, 294
MlyI	GAGTC	1 cut(s)	181
MnlI	CCTC	4 cut(s)	76, 94, 205, 300
MseI	TTAA	3 cut(s)	129, 188, 284
MspCI	CTTAAG	2 cut(s)	128, 187
MspR9I	CCNGG	1 cut(s)	177
MvaI	CCWGG	1 cut(s)	177
NdeII	GATC	1 cut(s)	148
PkrI	GCNGC	1 cut(s)	9
PleI	GAGTC	1 cut(s)	180
PpsI	GAGTC	1 cut(s)	180
Psp6I	CCWGG	1 cut(s)	175
PspGI	CCWGG	1 cut(s)	175
PspPI	GGNCC	1 cut(s)	214
SaqAI	TTAA	3 cut(s)	129, 188, 284
SatI	GCNGC	1 cut(s)	8
Sau3AI	GATC	1 cut(s)	148
Sau96I	GGNCC	1 cut(s)	214
SchI	GAGTC	1 cut(s)	181
ScrFI	CCNGG	1 cut(s)	177
SetI	ASST	3 cut(s)	62, 135, 169
SfaNI	GCATC	2 cut(s)	201, 281
SmlI	CTYRAG	2 cut(s)	128, 187
SmoI	CTYRAG	2 cut(s)	128, 187
Sse9I	AATT	4 cut(s)	33, 49, 224, 294
SsiI	CCGC	1 cut(s)	355
SspMI	CTAG	1 cut(s)	312
StyD4I	CCNGG	1 cut(s)	175
TaaI	ACNGT	1 cut(s)	304
TasI	AATT	4 cut(s)	33, 49, 224, 294
Tru1I	TTAA	3 cut(s)	129, 188, 284
Tru9I	TTAA	3 cut(s)	129, 188, 284
TscAI	CASTG	1 cut(s)	309
TseI	GCWGC	1 cut(s)	7
TspRI	CASTG	1 cut(s)	309
Vha464I	CTTAAG	2 cut(s)	128, 187
XapI	RAATTY	2 cut(s)	33, 49
XspI	CTAG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.