Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

27445129 .. 27445825

Gene Structure 697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00404970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGAGATTCAAACTATGTACCGTGGCAGAGCTTCAGTCGCCTACGAACAACTTTGCGGAAGAAAAGTTTCGGGCAAAGAAAAGTTCCCTAGCTCGATGGCCAACTATTGCGTGCTCCACATTGTCGTCTCTAGTTGCTCATAGCAACTTGAAGAGTGGCAATATCTTACTTGATGAAGATTTTGTTCCTCGTATCCGTGATCGCGGGCATGCTATTTTGAGGACACCGATCGACAAGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

80

Amino Acids

9.04

Weight (kDa)

9.78

Isoelectric Point (pI)

55.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	204
AciI	CCGC	2 cut(s)	56, 204
AcoI	YGGCCR	1 cut(s)	98
AcuI	CTGAAG	1 cut(s)	17
AfaI	GTAC	1 cut(s)	19
AgsI	TTSAA	2 cut(s)	10, 151
AluBI	AGCT	2 cut(s)	31, 92
AluI	AGCT	2 cut(s)	31, 92
Alw21I	GWGCWC	1 cut(s)	116
Alw26I	GTCTC	1 cut(s)	132
AoxI	GGCC	1 cut(s)	98
Asp700I	GAANNNNTTC	1 cut(s)	66
BalI	TGGCCA	1 cut(s)	100
Bbv12I	GWGCWC	1 cut(s)	116
BccI	CCATC	1 cut(s)	90
BciVI	GTATCC	1 cut(s)	203
BcoDI	GTCTC	1 cut(s)	132
BfaI	CTAG	2 cut(s)	89, 131
BfuI	GTATCC	1 cut(s)	203
BsaJI	CCNNGG	1 cut(s)	21
BseDI	CCNNGG	1 cut(s)	21
Bsh1236I	CGCG	1 cut(s)	204
Bsh1285I	CGRYCG	1 cut(s)	231
BshFI	GGCC	1 cut(s)	100
BsiEI	CGRYCG	1 cut(s)	231
BsiHKAI	GWGCWC	1 cut(s)	116
BsmAI	GTCTC	1 cut(s)	132
BsmBI	CGTCTC	1 cut(s)	132
BsnI	GGCC	1 cut(s)	100
Bsp1286I	GDGCHC	1 cut(s)	116
Bsp143I	GATC	2 cut(s)	199, 228
BspACI	CCGC	2 cut(s)	56, 204
BspANI	GGCC	1 cut(s)	100
BspFNI	CGCG	1 cut(s)	204
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	2 cut(s)	199, 228
Bst4CI	ACNGT	1 cut(s)	22
Bst6I	CTCTTC	1 cut(s)	146
BstC8I	GCNNGC	3 cut(s)	112, 206, 210
BstDSI	CCRYGG	1 cut(s)	21
BstFNI	CGCG	1 cut(s)	204
BstKTI	GATC	2 cut(s)	202, 231
BstMAI	GTCTC	1 cut(s)	132
BstMBI	GATC	2 cut(s)	199, 228
BstMCI	CGRYCG	1 cut(s)	231
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstNSI	RCATGY	1 cut(s)	212
BstUI	CGCG	1 cut(s)	204
BsuI	GTATCC	1 cut(s)	203
BsuRI	GGCC	1 cut(s)	100
BtgI	CCRYGG	1 cut(s)	21
Cac8I	GCNNGC	3 cut(s)	112, 206, 210
Csp6I	GTAC	1 cut(s)	18
CviAII	CATG	1 cut(s)	209
CviJI	RGCY	3 cut(s)	31, 92, 100
CviKI_1	RGCY	3 cut(s)	31, 92, 100
CviQI	GTAC	1 cut(s)	18
DpnI	GATC	2 cut(s)	201, 230
DpnII	GATC	2 cut(s)	199, 228
EaeI	YGGCCR	1 cut(s)	98
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
Eco57I	CTGAAG	1 cut(s)	17
Esp3I	CGTCTC	1 cut(s)	132
FaeI	CATG	1 cut(s)	212
FaiI	YATR	3 cut(s)	16, 141, 210
FatI	CATG	1 cut(s)	208
FauI	CCCGC	1 cut(s)	197
FspBI	CTAG	2 cut(s)	89, 131
HaeIII	GGCC	1 cut(s)	100
Hin1II	CATG	1 cut(s)	212
HinfI	GANTC	1 cut(s)	6
HpyCH4III	ACNGT	1 cut(s)	22
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
Hsp92II	CATG	1 cut(s)	212
Kzo9I	GATC	2 cut(s)	199, 228
LmnI	GCTCC	1 cut(s)	119
MaeI	CTAG	2 cut(s)	89, 131
MalI	GATC	2 cut(s)	201, 230
MboI	GATC	2 cut(s)	199, 228
MboII	GAAGA	3 cut(s)	71, 163, 188
MhlI	GDGCHC	1 cut(s)	116
MlsI	TGGCCA	1 cut(s)	100
MluNI	TGGCCA	1 cut(s)	100
MnlI	CCTC	2 cut(s)	198, 213
Mox20I	TGGCCA	1 cut(s)	100
MroXI	GAANNNNTTC	1 cut(s)	66
MscI	TGGCCA	1 cut(s)	100
Msp20I	TGGCCA	1 cut(s)	100
MvnI	CGCG	1 cut(s)	204
MwoI	GCNNNNNNNGC	1 cut(s)	37
NdeII	GATC	2 cut(s)	199, 228
NlaIII	CATG	1 cut(s)	212
NspI	RCATGY	1 cut(s)	212
PaeI	GCATGC	1 cut(s)	212
PdmI	GAANNNNTTC	1 cut(s)	66
PfeI	GAWTC	1 cut(s)	6
Ple19I	CGATCG	1 cut(s)	231
PvuI	CGATCG	1 cut(s)	231
RsaI	GTAC	1 cut(s)	19
RsaNI	GTAC	1 cut(s)	18
Sau3AI	GATC	2 cut(s)	199, 228
SduI	GDGCHC	1 cut(s)	116
SetI	ASST	2 cut(s)	33, 94
SphI	GCATGC	1 cut(s)	212
SsiI	CCGC	2 cut(s)	56, 204
SspMI	CTAG	2 cut(s)	89, 131
TaaI	ACNGT	1 cut(s)	22
TaqI	TCGA	2 cut(s)	94, 231
TfiI	GAWTC	1 cut(s)	6
TspDTI	ATGAA	1 cut(s)	189
TspGWI	ACGGA	1 cut(s)	185
XceI	RCATGY	1 cut(s)	212
XmnI	GAANNNNTTC	1 cut(s)	66
XspI	CTAG	2 cut(s)	89, 131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.