Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

44703639 .. 44705798

Gene Structure 2160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00423650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGTTGTCGTCGGTTCGTTGTTGCCTCGTAAGGTTGTGAACATAGATGGGAAGCCTTATATTCAGGTGAAGTTTAGAGGTGAAATCAAGGTGTTTAGCCCTGAGAAAATCAGTGCTATGATATTGACTAAGAAGATCAAAGACGCTCTCATAACTGTTCCAGGTAATCACCAGTTCTCTGTGGAGATTGAGTCTCTTTTCGATGGTACTGATTTCTCGAAGTCATTGACAAGGGAGAGGTTTGAGGAGGACCATGGGGATAGTGGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005788 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016592 GO:0022414 GO:0030154 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070013 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04918 ko05020 map03060 map04141 map04918 map05020

Pfam Domains

Protein Families

HSP70

Protein Analysis

90

Amino Acids

10.08

Weight (kDa)

6.73

Isoelectric Point (pI)

30.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	208
AjnI	CCWGG	1 cut(s)	160
Alw26I	GTCTC	1 cut(s)	198
AspS9I	GGNCC	1 cut(s)	250
AsuHPI	GGTGA	3 cut(s)	79, 92, 161
AvaII	GGWCC	1 cut(s)	250
BccI	CCATC	2 cut(s)	41, 197
BciT130I	CCWGG	1 cut(s)	162
BcoDI	GTCTC	1 cut(s)	198
Bme1390I	CCNGG	1 cut(s)	162
Bme18I	GGWCC	1 cut(s)	250
BmgT120I	GGNCC	1 cut(s)	250
BmrFI	CCNGG	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	253
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bse1I	ACTGG	1 cut(s)	172
BseBI	CCWGG	1 cut(s)	162
BseDI	CCNNGG	1 cut(s)	253
BseMII	CTCAG	1 cut(s)	93
BseNI	ACTGG	1 cut(s)	172
BseRI	GAGGAG	1 cut(s)	260
BsmAI	GTCTC	1 cut(s)	198
Bsp143I	GATC	1 cut(s)	135
Bsp19I	CCATGG	1 cut(s)	253
BspCNI	CTCAG	1 cut(s)	94
BsrI	ACTGG	1 cut(s)	172
BssECI	CCNNGG	1 cut(s)	253
BssMI	GATC	1 cut(s)	135
BssT1I	CCWWGG	1 cut(s)	253
Bst2UI	CCWGG	1 cut(s)	162
Bst4CI	ACNGT	1 cut(s)	157
BstDEI	CTNAG	2 cut(s)	102, 129
BstDSI	CCRYGG	1 cut(s)	253
BstKTI	GATC	1 cut(s)	138
BstMAI	GTCTC	1 cut(s)	198
BstMBI	GATC	1 cut(s)	135
BstNI	CCWGG	1 cut(s)	162
BstSCI	CCNGG	1 cut(s)	160
BtgI	CCRYGG	1 cut(s)	253
BtsIMutI	CAGTG	1 cut(s)	118
Cfr13I	GGNCC	1 cut(s)	250
CseI	GACGC	1 cut(s)	152
Csp6I	GTAC	1 cut(s)	207
CviAII	CATG	1 cut(s)	254
CviJI	RGCY	2 cut(s)	55, 99
CviKI_1	RGCY	2 cut(s)	55, 99
CviQI	GTAC	1 cut(s)	207
DdeI	CTNAG	2 cut(s)	102, 129
DpnI	GATC	1 cut(s)	137
DpnII	GATC	1 cut(s)	135
Eco130I	CCWWGG	1 cut(s)	253
Eco47I	GGWCC	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	160
EcoT14I	CCWWGG	1 cut(s)	253
ErhI	CCWWGG	1 cut(s)	253
FaeI	CATG	1 cut(s)	257
FaiI	YATR	5 cut(s)	44, 60, 119, 152, 255
FatI	CATG	1 cut(s)	253
HgaI	GACGC	1 cut(s)	152
Hin1II	CATG	1 cut(s)	257
HinfI	GANTC	1 cut(s)	191
HphI	GGTGA	3 cut(s)	79, 92, 161
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188III	TCNNGA	1 cut(s)	217
Hpy8I	GTNNAC	1 cut(s)	40
Hpy99I	CGWCG	1 cut(s)	14
HpyCH4III	ACNGT	1 cut(s)	157
HpyF3I	CTNAG	2 cut(s)	102, 129
Hsp92II	CATG	1 cut(s)	257
Kzo9I	GATC	1 cut(s)	135
LpnPI	CCDG	5 cut(s)	50, 114, 147, 174, 185
MalI	GATC	1 cut(s)	137
MboI	GATC	1 cut(s)	135
MboII	GAAGA	1 cut(s)	145
MluCI	AATT	1 cut(s)	268
MlyI	GAGTC	1 cut(s)	200
MnlI	CCTC	5 cut(s)	36, 71, 231, 238, 241
MseI	TTAA	1 cut(s)	271
MspR9I	CCNGG	1 cut(s)	162
MvaI	CCWGG	1 cut(s)	162
NcoI	CCATGG	1 cut(s)	253
NdeII	GATC	1 cut(s)	135
NlaIII	CATG	1 cut(s)	257
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
Psp6I	CCWGG	1 cut(s)	160
PspGI	CCWGG	1 cut(s)	160
PspPI	GGNCC	1 cut(s)	250
RsaI	GTAC	1 cut(s)	208
RsaNI	GTAC	1 cut(s)	207
SaqAI	TTAA	1 cut(s)	271
Sau3AI	GATC	1 cut(s)	135
Sau96I	GGNCC	1 cut(s)	250
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	1 cut(s)	162
SetI	ASST	6 cut(s)	36, 69, 82, 93, 166, 242
SinI	GGWCC	1 cut(s)	250
Sse9I	AATT	1 cut(s)	268
StyD4I	CCNGG	1 cut(s)	160
StyI	CCWWGG	1 cut(s)	253
TaaI	ACNGT	1 cut(s)	157
TaqI	TCGA	2 cut(s)	201, 218
TasI	AATT	1 cut(s)	268
Tru1I	TTAA	1 cut(s)	271
Tru9I	TTAA	1 cut(s)	271
TscAI	CASTG	1 cut(s)	118
TspRI	CASTG	1 cut(s)	118
VpaK11BI	GGWCC	1 cut(s)	250
XcmI	CCANNNNNNNNNTGG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.