Rroxscaffold_6G00427080
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
N/A
Physical Location & Seq
Reverse (-)
47665613 .. 47669559
3947 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00427080.1

Sequence Viewer

Length: 1806 bp
ATGGCGAAGATATCAGTGGGTTTGGTAATTACTATAGTTGCTCTTGTTACTGCCCTTATGGTTTATGAATCTGAGGGGCTTAATGATCAGGGTCAGTACCTTCTAGAAATAAAGAGTAGAATTGTTGACGGATTTGGCCATCTTAGTAGTTGGAATTCCAGTGATTCAACACCTTGTGGATGGAGGGGAGTGGATTGTAGCGAAGGATTGTATCCGGTGGTCTTGTCTCTTGACTTGAGTTCCATGAATCTTTCGGGTTCTTTATCTCCAAGCATTGGTAGAATGATTCACCTGAATTATCTTGACCTTTCTTTCAATGAAATGTCTGGGAGTATACCTGAAGACATTGGGAATTGTTCCTATTTGCAGGTTCTTAGTTTAAATAACAATAAGTTTGAAGGTCAAATTCCCACAGGATTGGGTAGACTTTCTTATTTAGAAGTCTTGAAGGTGTGTAATAATAGAATATCAGGGCCTTTCCCAGAAGAACTTGGAAATCTTTCTTCTCTGTCGCAATTGATTGCATACACTAATAATCTTAGTGGACCACTGCCACGTTCTATTGGTAACCTCAAAAGATTGAAGACTTTCCGGGCAGGGGAGAATTCAATATCAGGAAGCTTACCTTCCGAGATTGGTGAATGTGAAAGCTTGAACTATCTTGGTCTAGCTCAAAATCAGTTAAGCGGAGAAATTCCGAAAGAGATTGGAATGCTCGAGAATTTGAGTGTTTTAATTCTTTGGGAAAATCTGCTTTCTGGTGTCATTCCAAAGGAGCTTGGCAACTGTACAAATTTGGATACTCTGGCCCTCTACAAGAACAAGTTTGAAGGAGAGATACCAAAGGAGCTTGGGAGCCTTGTATTTCTAGAGAAGCTATATATGTACAGAAATATGCTGAGCGGGACAGTTCCAAGAGAGATTGGTAATCTTTCTCTTGCTACGGATATTGATTTTTCTGAGAACTTGTTGTCTGGAGAGATACCAGTTGAGCTCAGTAAGATATCGGGGTTGCAATTGCTTTATCTTTTTGAGAACCAACTCACAGGTGTTATTCCAGAGGAGCTCACAAGCTTGACAAACCTGACAAGGCTCGACCTCTCTATAAATCATCTCACTGGTTCAATTCCAACTGGATTTCAATACATGAATGAGCTGATCATGCTACAGTTGTTTAACAATATGTTGAGTGACATAATTCCTCAAGGACTTGGGGTGTATAGCCCACTTTGGGTGGTTGACTTATCTGAGAACTTCCTGACAGGAAGAATTCCTCGTCATGTCTGCAGAAATTCTAATCTGATTTTGTTAAACTTGGGGTCTAACAGGCTCACCGGTAATATCCCAACTGGGGTCACAAGCTGCAAGTCATTGGTGCAGCTCCGTCTGGTGGGAAACAACCTTACAGGGACTCTTCCAACCGAAATGTGCAAATTGGTTAACCTTTCTGCAGTTGAGTTGGACCAGAACAAGTTCAGCGGTGCCATTCCTCCAGCAATTGGTAACTGCAGAACTATGCAGAGACTACTACTTGCAGACAACTACTTCACATCTGAGTTGCCAAGAGAGATTGGGGAGCTCTCGCAGTTGGTGATCTTCAATATCTCATCGAATTTACTGTCTGGCAGGATACCACCTGAAATTTTCAATTGTAAAATGCTTCAACGGCTTGATCTGAGTAGCAACAACTTTTCGGATGTCTTGCCAATTGAGATAGGGGCACTTTCTCAGTTGGAGCTTCTCAAGCTTTCCGATAATCATCTTTCGGGGATATCCCAGTTGCACTGGGAAATCTCTTGCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

601

Amino Acids

65.91

Weight (kDa)

4.84

Isoelectric Point (pI)

33.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 27 - 67 4.1e-13 Leucine rich repeat N-terminal domain
LRR_14 PF23598 74 - 197 2.5e-13 Leucine-rich repeat region
LRR_14 PF23598 183 - 272 2.5e-08 Leucine-rich repeat region
LRR_14 PF23598 211 - 311 3.6e-08 Leucine-rich repeat region
LRR_8 PF13855 529 - 588 2.7e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 358
AccB1I GGYRCC 1 cut(s) 1481
AccB7I CCANNNNNTGG 2 cut(s) 275, 1499
AccBSI CCGCTC 1 cut(s) 903
AccI GTMKAC 2 cut(s) 334, 424
AciI CCGC 3 cut(s) 687, 903, 1479
AcoI YGGCCR 1 cut(s) 136
AcuI CTGAAG 1 cut(s) 360
AdeI CACNNNGTG 1 cut(s) 176
AfaI GTAC 3 cut(s) 98, 790, 887
AfiI CCNNNNNNNGG 6 cut(s) 275, 598, 1231, 1351, 1390, 1499
AgeI ACCGGT 1 cut(s) 1334
Alw21I GWGCWC 3 cut(s) 996, 1068, 1581
Alw26I GTCTC 2 cut(s) 231, 1516
Ama87I CYCGRG 1 cut(s) 716
AoxI GGCC 3 cut(s) 136, 473, 807
ApeKI GCWGC 2 cut(s) 1362, 1378
ArsI GACNNNNNNTTYG 2 cut(s) 1604, 1636
AsiGI ACCGGT 1 cut(s) 1334
Asp700I GAANNNNTTC 3 cut(s) 499, 587, 1472
AspS9I GGNCC 4 cut(s) 473, 545, 808, 1462
AsuC2I CCSGG 1 cut(s) 593
AsuHPI GGTGA 4 cut(s) 281, 650, 1324, 1603
AvaI CYCGRG 1 cut(s) 716
AvaII GGWCC 2 cut(s) 545, 1462
BaeGI GKGCMC 1 cut(s) 1723
BalI TGGCCA 1 cut(s) 138
BanI GGYRCC 1 cut(s) 1481
BanII GRGCYC 3 cut(s) 996, 1068, 1581
BarI GAAGNNNNNNTAC 2 cut(s) 822, 854
BbsI GAAGAC 2 cut(s) 348, 590
Bbv12I GWGCWC 3 cut(s) 996, 1068, 1581
BbvI GCAGC 2 cut(s) 1349, 1390
BccI CCATC 2 cut(s) 147, 174
BceAI ACGGC 1 cut(s) 1682
BciVI GTATCC 3 cut(s) 222, 793, 1623
BclI TGATCA 2 cut(s) 85, 1158
BcnI CCSGG 1 cut(s) 593
BcoDI GTCTC 2 cut(s) 231, 1516
BfaI CTAG 3 cut(s) 104, 668, 869
BfmI CTRYAG 5 cut(s) 33, 1166, 1285, 1449, 1507
BfuAI ACCTGC 1 cut(s) 358
BfuI GTATCC 3 cut(s) 222, 793, 1623
BisI GCNGC 2 cut(s) 1363, 1379
BlpI GCTNAGC 1 cut(s) 899
BlsI GCNGC 2 cut(s) 1364, 1380
Bme1390I CCNGG 1 cut(s) 593
Bme18I GGWCC 2 cut(s) 545, 1462
BmeT110I CYCGRG 1 cut(s) 716
BmgT120I GGNCC 4 cut(s) 473, 545, 808, 1462
BmiI GGNNCC 2 cut(s) 857, 1483
BmrFI CCNGG 1 cut(s) 593
BmrI ACTGGG 3 cut(s) 1359, 1771, 1795
BmuI ACTGGG 3 cut(s) 1359, 1771, 1795
BpiI GAAGAC 2 cut(s) 348, 590
BpmI CTGGAG 2 cut(s) 996, 1476
Bpu1102I GCTNAGC 1 cut(s) 899
BpuEI CTTGAG 3 cut(s) 256, 1188, 1727
BpuMI CCSGG 1 cut(s) 593
BsaBI GATNNNNATC 1 cut(s) 1758
BsaWI WCCGGW 2 cut(s) 214, 1334
Bsc4I CCNNNNNNNGG 6 cut(s) 275, 598, 1231, 1351, 1390, 1499
Bse118I RCCGGY 1 cut(s) 1334
Bse1I ACTGG 7 cut(s) 159, 986, 1123, 1138, 1354, 1777, 1790
Bse8I GATNNNNATC 1 cut(s) 1758
BseGI GGATG 2 cut(s) 185, 1702
BseJI GATNNNNATC 1 cut(s) 1758
BseLI CCNNNNNNNGG 6 cut(s) 275, 598, 1231, 1351, 1390, 1499
BseMII CTCAG 8 cut(s) 63, 890, 951, 1009, 1239, 1545, 1667, 1742
BseNI ACTGG 7 cut(s) 159, 986, 1123, 1138, 1354, 1777, 1790
BseRI GAGGAG 1 cut(s) 1076
BseSI GKGCMC 1 cut(s) 1723
BseXI GCAGC 2 cut(s) 1349, 1390
BsgI GTGCAG 1 cut(s) 1397
BshFI GGCC 3 cut(s) 138, 475, 809
BshNI GGYRCC 1 cut(s) 1481
BshTI ACCGGT 1 cut(s) 1334
BsiHKAI GWGCWC 3 cut(s) 996, 1068, 1581
BsiHKCI CYCGRG 1 cut(s) 716
BsiSI CCGG 3 cut(s) 215, 592, 1335
BslFI GGGAC 2 cut(s) 919, 1423
BslI CCNNNNNNNGG 6 cut(s) 275, 598, 1231, 1351, 1390, 1499
BsmAI GTCTC 2 cut(s) 231, 1516
BsmFI GGGAC 2 cut(s) 919, 1423
BsmI GAATGC 1 cut(s) 717
BsnI GGCC 3 cut(s) 138, 475, 809
BsoBI CYCGRG 1 cut(s) 716
Bsp1286I GDGCHC 4 cut(s) 996, 1068, 1581, 1723
Bsp1407I TGTACA 2 cut(s) 788, 885
Bsp143I GATC 4 cut(s) 85, 1158, 1593, 1672
Bsp1720I GCTNAGC 1 cut(s) 899
BspACI CCGC 3 cut(s) 687, 903, 1479
BspANI GGCC 3 cut(s) 138, 475, 809
BspCNI CTCAG 8 cut(s) 64, 891, 952, 1008, 1240, 1546, 1668, 1741
BspLI GGNNCC 2 cut(s) 857, 1483
BspMAI CTGCAG 3 cut(s) 1289, 1453, 1511
BspMI ACCTGC 1 cut(s) 358
BspT107I GGYRCC 1 cut(s) 1481
BsrBI CCGCTC 1 cut(s) 903
BsrFI RCCGGY 1 cut(s) 1334
BsrGI TGTACA 2 cut(s) 788, 885
BsrI ACTGG 7 cut(s) 159, 986, 1123, 1138, 1354, 1777, 1790
BssAI RCCGGY 1 cut(s) 1334
BssMI GATC 4 cut(s) 85, 1158, 1593, 1672
BssNAI GTATAC 1 cut(s) 335
Bst1107I GTATAC 1 cut(s) 335
Bst4CI ACNGT 4 cut(s) 788, 910, 1170, 1620
Bst6I CTCTTC 1 cut(s) 1419
BstAUI TGTACA 2 cut(s) 788, 885
BstEII GGTNACC 1 cut(s) 566
BstF5I GGATG 2 cut(s) 185, 1702
BstKTI GATC 4 cut(s) 88, 1161, 1596, 1675
BstMAI GTCTC 2 cut(s) 231, 1516
BstMBI GATC 4 cut(s) 85, 1158, 1593, 1672
BstMWI GCNNNNNNNGC 3 cut(s) 1162, 1666, 1744
BstPI GGTNACC 1 cut(s) 566
BstSCI CCNGG 1 cut(s) 591
BstSFI CTRYAG 5 cut(s) 33, 1166, 1285, 1449, 1507
BstSLI GKGCMC 1 cut(s) 1723
BstV1I GCAGC 2 cut(s) 1349, 1390
BstV2I GAAGAC 2 cut(s) 348, 590
BstXI CCANNNNNNTGG 1 cut(s) 418
BstZ17I GTATAC 1 cut(s) 335
BsuI GTATCC 3 cut(s) 222, 793, 1623
BsuRI GGCC 3 cut(s) 138, 475, 809
BtsCI GGATG 2 cut(s) 185, 1702
BtsI GCAGTG 1 cut(s) 548
BtsIMutI CAGTG 5 cut(s) 21, 166, 548, 1116, 1783
BveI ACCTGC 1 cut(s) 358
Cfr10I RCCGGY 1 cut(s) 1334
Cfr13I GGNCC 4 cut(s) 473, 545, 808, 1462
Csp6I GTAC 3 cut(s) 97, 789, 886
CspAI ACCGGT 1 cut(s) 1334
CviAII CATG 4 cut(s) 244, 1147, 1162, 1280
CviQI GTAC 3 cut(s) 97, 789, 886
DpnI GATC 4 cut(s) 87, 1160, 1595, 1674
DpnII GATC 4 cut(s) 85, 1158, 1593, 1672
DraI TTTAAA 1 cut(s) 381
DraIII CACNNNGTG 1 cut(s) 176
EaeI YGGCCR 1 cut(s) 136
Eam1104I CTCTTC 1 cut(s) 1419
EarI CTCTTC 1 cut(s) 1419
Ecl136II GAGCTC 3 cut(s) 994, 1066, 1579
Eco24I GRGCYC 3 cut(s) 996, 1068, 1581
Eco32I GATATC 3 cut(s) 12, 1005, 1773
Eco47I GGWCC 2 cut(s) 545, 1462
Eco53kI GAGCTC 3 cut(s) 994, 1066, 1579
Eco57I CTGAAG 1 cut(s) 360
Eco88I CYCGRG 1 cut(s) 716
Eco91I GGTNACC 1 cut(s) 566
EcoICRI GAGCTC 3 cut(s) 994, 1066, 1579
EcoO109I RGGNCCY 1 cut(s) 473
EcoO65I GGTNACC 1 cut(s) 566
EcoRI GAATTC 3 cut(s) 154, 604, 1269
EcoRV GATATC 3 cut(s) 12, 1005, 1773
EcoT38I GRGCYC 3 cut(s) 996, 1068, 1581
FaeI CATG 4 cut(s) 247, 1150, 1165, 1283
FalI AAGNNNNNCTT 2 cut(s) 610, 642
FaqI GGGAC 2 cut(s) 919, 1423
FatI CATG 4 cut(s) 243, 1146, 1161, 1279
FauI CCCGC 1 cut(s) 896
FbaI TGATCA 2 cut(s) 85, 1158
FblI GTMKAC 2 cut(s) 334, 424
Fnu4HI GCNGC 2 cut(s) 1363, 1379
FokI GGATG 2 cut(s) 192, 1709
FriOI GRGCYC 3 cut(s) 996, 1068, 1581
Fsp4HI GCNGC 2 cut(s) 1363, 1379
FspBI CTAG 3 cut(s) 104, 668, 869
GluI GCNGC 2 cut(s) 1363, 1379
GsuI CTGGAG 2 cut(s) 996, 1476
HaeIII GGCC 3 cut(s) 138, 475, 809
HapII CCGG 3 cut(s) 215, 592, 1335
Hin1II CATG 4 cut(s) 247, 1150, 1165, 1283
HincII GTYRAC 3 cut(s) 127, 1240, 1441
HindII GTYRAC 3 cut(s) 127, 1240, 1441
HindIII AAGCTT 4 cut(s) 619, 649, 1072, 1745
HinfI GANTC 5 cut(s) 68, 164, 247, 286, 1411
HpaI GTTAAC 1 cut(s) 1441
HpaII CCGG 3 cut(s) 215, 592, 1335
HphI GGTGA 4 cut(s) 281, 650, 1324, 1603
Hpy166II GTNNAC 6 cut(s) 127, 335, 425, 545, 1240, 1441
Hpy8I GTNNAC 6 cut(s) 127, 335, 425, 545, 1240, 1441
HpyAV CCTTC 6 cut(s) 110, 197, 392, 442, 636, 824
HpyCH4III ACNGT 4 cut(s) 788, 910, 1170, 1620
HpyCH4IV ACGT 1 cut(s) 556
HpyF10VI GCNNNNNNNGC 3 cut(s) 1162, 1666, 1744
HpySE526I ACGT 1 cut(s) 556
Hsp92II CATG 4 cut(s) 247, 1150, 1165, 1283
Ksp22I TGATCA 2 cut(s) 85, 1158
KspAI GTTAAC 1 cut(s) 1441
Kzo9I GATC 4 cut(s) 85, 1158, 1593, 1672
LmnI GCTCC 7 cut(s) 775, 847, 855, 1063, 1386, 1576, 1735
Lsp1109I GCAGC 2 cut(s) 1349, 1390
MaeI CTAG 3 cut(s) 104, 668, 869
MaeII ACGT 1 cut(s) 556
MaeIII GTNAC 5 cut(s) 46, 566, 1190, 1354, 1502
MalI GATC 4 cut(s) 87, 1160, 1595, 1674
MbiI CCGCTC 1 cut(s) 903
MboI GATC 4 cut(s) 85, 1158, 1593, 1672
MboII GAAGA 8 cut(s) 19, 353, 495, 497, 595, 1278, 1406, 1588
MfeI CAATTG 5 cut(s) 515, 1016, 1497, 1648, 1707
MhlI GDGCHC 4 cut(s) 996, 1068, 1581, 1723
MlsI TGGCCA 1 cut(s) 138
MluNI TGGCCA 1 cut(s) 138
MlyI GAGTC 1 cut(s) 1405
MmeI TCCRAC 5 cut(s) 131, 1154, 1440, 1442, 1713
MnlI CCTC 9 cut(s) 67, 177, 581, 821, 1054, 1109, 1212, 1284, 1500
Mox20I TGGCCA 1 cut(s) 138
MroXI GAANNNNTTC 3 cut(s) 499, 587, 1472
MscI TGGCCA 1 cut(s) 138
MseI TTAA 7 cut(s) 81, 380, 683, 734, 1176, 1310, 1440
Msp20I TGGCCA 1 cut(s) 138
MspA1I CMGCKG 1 cut(s) 1479
MspI CCGG 3 cut(s) 215, 592, 1335
MspR9I CCNGG 1 cut(s) 593
MunI CAATTG 5 cut(s) 515, 1016, 1497, 1648, 1707
Mva1269I GAATGC 1 cut(s) 717
MwoI GCNNNNNNNGC 3 cut(s) 1162, 1666, 1744
NciI CCSGG 1 cut(s) 593
NdeII GATC 4 cut(s) 85, 1158, 1593, 1672
NlaIII CATG 4 cut(s) 247, 1150, 1165, 1283
NlaIV GGNNCC 2 cut(s) 857, 1483
NmuCI GTSAC 2 cut(s) 1190, 1354
PaeR7I CTCGAG 1 cut(s) 716
PctI GAATGC 1 cut(s) 717
PdmI GAANNNNTTC 3 cut(s) 499, 587, 1472
PfeI GAWTC 4 cut(s) 68, 164, 247, 286
PflMI CCANNNNNTGG 2 cut(s) 275, 1499
PinAI ACCGGT 1 cut(s) 1334
PkrI GCNGC 2 cut(s) 1364, 1380
PleI GAGTC 1 cut(s) 1405
PpsI GAGTC 1 cut(s) 1405
Psp124BI GAGCTC 3 cut(s) 996, 1068, 1581
PspEI GGTNACC 1 cut(s) 566
PspN4I GGNNCC 2 cut(s) 857, 1483
PspPI GGNCC 4 cut(s) 473, 545, 808, 1462
PstI CTGCAG 3 cut(s) 1289, 1453, 1511
RsaI GTAC 3 cut(s) 98, 790, 887
RsaNI GTAC 3 cut(s) 97, 789, 886
SacI GAGCTC 3 cut(s) 996, 1068, 1581
SaqAI TTAA 7 cut(s) 81, 380, 683, 734, 1176, 1310, 1440
SatI GCNGC 2 cut(s) 1363, 1379
Sau3AI GATC 4 cut(s) 85, 1158, 1593, 1672
Sau96I GGNCC 4 cut(s) 473, 545, 808, 1462
SchI GAGTC 1 cut(s) 1405
ScrFI CCNGG 1 cut(s) 593
SduI GDGCHC 4 cut(s) 996, 1068, 1581, 1723
SfcI CTRYAG 5 cut(s) 33, 1166, 1285, 1449, 1507
Sfr274I CTCGAG 1 cut(s) 716
SinI GGWCC 2 cut(s) 545, 1462
SlaI CTCGAG 1 cut(s) 716
SmlI CTYRAG 4 cut(s) 235, 716, 1203, 1742
SmoI CTYRAG 4 cut(s) 235, 716, 1203, 1742
SsiI CCGC 3 cut(s) 687, 903, 1479
SspMI CTAG 3 cut(s) 104, 668, 869
SstI GAGCTC 3 cut(s) 996, 1068, 1581
StyD4I CCNGG 1 cut(s) 591
TaaI ACNGT 4 cut(s) 788, 910, 1170, 1620
TaiI ACGT 1 cut(s) 559
TaqI TCGA 3 cut(s) 717, 1095, 1610
TatI WGTACW 2 cut(s) 788, 885
TfiI GAWTC 4 cut(s) 68, 164, 247, 286
Tru1I TTAA 7 cut(s) 81, 380, 683, 734, 1176, 1310, 1440
Tru9I TTAA 7 cut(s) 81, 380, 683, 734, 1176, 1310, 1440
TscAI CASTG 5 cut(s) 21, 166, 555, 1123, 1790
TseFI GTSAC 2 cut(s) 1190, 1354
TseI GCWGC 2 cut(s) 1362, 1378
Tsp45I GTSAC 2 cut(s) 1190, 1354
TspDTI ATGAA 4 cut(s) 81, 260, 333, 1163
TspGWI ACGGA 3 cut(s) 144, 959, 1373
TspRI CASTG 5 cut(s) 21, 166, 555, 1123, 1790
Van91I CCANNNNNTGG 2 cut(s) 275, 1499
VpaK11BI GGWCC 2 cut(s) 545, 1462
XbaI TCTAGA 2 cut(s) 103, 868
XhoI CTCGAG 1 cut(s) 716
XmiI GTMKAC 2 cut(s) 334, 424
XmnI GAANNNNTTC 3 cut(s) 499, 587, 1472
XspI CTAG 3 cut(s) 104, 668, 869
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.