Rroxscaffold_7G00157510
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
N/A
Physical Location & Seq
Reverse (-)
1333902 .. 1334468
567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00157510.1

Sequence Viewer

Length: 324 bp
ATGAACAAATTTCAAGGGATATTTCAGAAGAAAAAGGGGTCTCCAACGGCGTTGCCGAGAATTGATCCAAGAGCAGCGAAGCAAGTAACGCCTACTCATTACACGCCGGCTACTGTGGCAGCTGTGGAGCCGCACGGTTGTTGTCGAGATTCGGTTAAAGTTGTTTCGATGAGCCAGGAACAGCAGCCTAGCTGGGTTCTTGGTACCACAAGCTGTTTAGCAAATCTGAGTGTAGGTCTCTCTGCGAATTACTTTATTTCGGCTCAGATCAATGACAAGTGCAAGTCAAGAATTTGTTACTACGGAGGGGTTATTATTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

107

Amino Acids

11.6

Weight (kDa)

9.4

Isoelectric Point (pI)

41.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 203
AccB1I GGYRCC 1 cut(s) 203
AciI CCGC 1 cut(s) 131
AclWI GGATC 1 cut(s) 59
AcsI RAATTY 2 cut(s) 8, 291
AfaI GTAC 1 cut(s) 205
AgsI TTSAA 1 cut(s) 14
AjnI CCWGG 1 cut(s) 174
AluBI AGCT 3 cut(s) 122, 192, 213
AluI AGCT 3 cut(s) 122, 192, 213
Alw26I GTCTC 2 cut(s) 45, 242
AlwI GGATC 1 cut(s) 59
ApeKI GCWGC 3 cut(s) 74, 119, 184
ApoI RAATTY 2 cut(s) 8, 291
Asp718I GGTACC 1 cut(s) 203
BanI GGYRCC 1 cut(s) 203
BbvI GCAGC 3 cut(s) 86, 131, 196
BceAI ACGGC 1 cut(s) 63
BciT130I CCWGG 1 cut(s) 176
BcoDI GTCTC 2 cut(s) 45, 242
BfaI CTAG 1 cut(s) 189
BisI GCNGC 4 cut(s) 75, 120, 131, 185
BlsI GCNGC 4 cut(s) 76, 121, 132, 186
Bme1390I CCNGG 1 cut(s) 176
BmiI GGNNCC 2 cut(s) 129, 205
BmrFI CCNGG 1 cut(s) 176
BsaI GGTCTC 2 cut(s) 45, 242
Bse118I RCCGGY 1 cut(s) 106
BseBI CCWGG 1 cut(s) 176
BseMII CTCAG 2 cut(s) 218, 278
BseXI GCAGC 3 cut(s) 86, 131, 196
BseYI CCCAGC 1 cut(s) 192
BshNI GGYRCC 1 cut(s) 203
BsiSI CCGG 1 cut(s) 107
BsmAI GTCTC 2 cut(s) 45, 242
Bso31I GGTCTC 2 cut(s) 45, 242
Bsp143I GATC 2 cut(s) 64, 267
BspACI CCGC 1 cut(s) 131
BspCNI CTCAG 2 cut(s) 219, 277
BspLI GGNNCC 2 cut(s) 129, 205
BspPI GGATC 1 cut(s) 59
BspT107I GGYRCC 1 cut(s) 203
BspTNI GGTCTC 2 cut(s) 45, 242
BsrFI RCCGGY 1 cut(s) 106
BssAI RCCGGY 1 cut(s) 106
BssMI GATC 2 cut(s) 64, 267
Bst2UI CCWGG 1 cut(s) 176
Bst4CI ACNGT 2 cut(s) 115, 137
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 2 cut(s) 227, 264
BstKTI GATC 2 cut(s) 67, 270
BstMAI GTCTC 2 cut(s) 45, 242
BstMBI GATC 2 cut(s) 64, 267
BstMWI GCNNNNNNNGC 2 cut(s) 88, 116
BstNI CCWGG 1 cut(s) 176
BstSCI CCNGG 1 cut(s) 174
BstV1I GCAGC 3 cut(s) 86, 131, 196
Cac8I GCNNGC 1 cut(s) 108
Cfr10I RCCGGY 1 cut(s) 106
Csp6I GTAC 1 cut(s) 204
CviJI RGCY 8 cut(s) 110, 122, 130, 174, 187, 192, 213, 263
CviKI_1 RGCY 8 cut(s) 110, 122, 130, 174, 187, 192, 213, 263
CviQI GTAC 1 cut(s) 204
DdeI CTNAG 2 cut(s) 227, 264
DpnI GATC 2 cut(s) 66, 269
DpnII GATC 2 cut(s) 64, 267
Eco31I GGTCTC 2 cut(s) 45, 242
EcoRII CCWGG 1 cut(s) 174
Fnu4HI GCNGC 4 cut(s) 75, 120, 131, 185
Fsp4HI GCNGC 4 cut(s) 75, 120, 131, 185
FspBI CTAG 1 cut(s) 189
GluI GCNGC 4 cut(s) 75, 120, 131, 185
GsaI CCCAGC 1 cut(s) 196
HapII CCGG 1 cut(s) 107
HinfI GANTC 1 cut(s) 149
HpaII CCGG 1 cut(s) 107
Hpy188I TCNGA 3 cut(s) 27, 228, 267
Hpy188III TCNNGA 2 cut(s) 146, 288
HpyCH4III ACNGT 2 cut(s) 115, 137
HpyCH4V TGCA 1 cut(s) 282
HpyF10VI GCNNNNNNNGC 2 cut(s) 88, 116
HpyF3I CTNAG 2 cut(s) 227, 264
KpnI GGTACC 1 cut(s) 207
KroI GCCGGC 1 cut(s) 106
KroNI GCCGGC 1 cut(s) 108
Kzo9I GATC 2 cut(s) 64, 267
LmnI GCTCC 1 cut(s) 127
LpnPI CCDG 4 cut(s) 120, 161, 178, 188
Lsp1109I GCAGC 3 cut(s) 86, 131, 196
MaeI CTAG 1 cut(s) 189
MaeIII GTNAC 2 cut(s) 85, 296
MalI GATC 2 cut(s) 66, 269
MboI GATC 2 cut(s) 64, 267
MboII GAAGA 1 cut(s) 40
MluCI AATT 4 cut(s) 8, 60, 247, 291
MmeI TCCRAC 1 cut(s) 68
MnlI CCTC 1 cut(s) 299
MroNI GCCGGC 1 cut(s) 106
MseI TTAA 1 cut(s) 156
MspA1I CMGCKG 1 cut(s) 122
MspI CCGG 1 cut(s) 107
MspR9I CCNGG 1 cut(s) 176
MvaI CCWGG 1 cut(s) 176
MwoI GCNNNNNNNGC 2 cut(s) 88, 116
NaeI GCCGGC 1 cut(s) 108
NdeII GATC 2 cut(s) 64, 267
NgoMIV GCCGGC 1 cut(s) 106
NlaIV GGNNCC 2 cut(s) 129, 205
NmeAIII GCCGAG 1 cut(s) 81
PcsI WCGNNNNNNNCGW 1 cut(s) 53
PdiI GCCGGC 1 cut(s) 108
PfeI GAWTC 1 cut(s) 149
PkrI GCNGC 4 cut(s) 76, 121, 132, 186
Psp6I CCWGG 1 cut(s) 174
PspFI CCCAGC 1 cut(s) 192
PspGI CCWGG 1 cut(s) 174
PspN4I GGNNCC 2 cut(s) 129, 205
PvuII CAGCTG 1 cut(s) 122
RsaI GTAC 1 cut(s) 205
RsaNI GTAC 1 cut(s) 204
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 4 cut(s) 75, 120, 131, 185
Sau3AI GATC 2 cut(s) 64, 267
ScrFI CCNGG 1 cut(s) 176
SetI ASST 4 cut(s) 124, 194, 215, 238
Sse9I AATT 4 cut(s) 8, 60, 247, 291
SsiI CCGC 1 cut(s) 131
SspMI CTAG 1 cut(s) 189
StyD4I CCNGG 1 cut(s) 174
TaaI ACNGT 2 cut(s) 115, 137
TaqI TCGA 2 cut(s) 145, 167
TasI AATT 4 cut(s) 8, 60, 247, 291
TauI GCSGC 1 cut(s) 133
TfiI GAWTC 1 cut(s) 149
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TseI GCWGC 3 cut(s) 74, 119, 184
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 318
XapI RAATTY 2 cut(s) 8, 291
XspI CTAG 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.