Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

5580783 .. 5583034

Gene Structure 2252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00163290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGTTCAGGTCATTGGCATTGGGTCGTCCAGAAATAAACTACAACGTCTTGGGGATGGGGAGGAAAGAGCCATTGGTTAAGCCCATCTGGGGAGGAACATTTGGGTTGCCAGATTTGATGAAGGCCACGATGGAGATTTTGGGAAATGAAGGATTGGGGTTAGCTTACAAAGATGTGATGGGTACTGGGTTGTCCGTGGTGGTGAAGAGGGATGAGGGAGATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006935 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009856 GO:0009987 GO:0010183 GO:0010769 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022603 GO:0022604 GO:0030054 GO:0030427 GO:0032501 GO:0032502 GO:0035838 GO:0036211 GO:0040008 GO:0040011 GO:0042221 GO:0042330 GO:0042802 GO:0042995 GO:0043170 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044463 GO:0044464 GO:0044706 GO:0045595 GO:0048638 GO:0048856 GO:0048868 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0050918 GO:0051128 GO:0051239 GO:0051286 GO:0051510 GO:0051704 GO:0055044 GO:0060284 GO:0065007 GO:0071704 GO:0071944 GO:0080092 GO:0090404 GO:0090406 GO:0120025 GO:0120038 GO:0140096 GO:1901564 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

75

Amino Acids

8.15

Weight (kDa)

5.37

Isoelectric Point (pI)

32.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	184
AfiI	CCNNNNNNNGG	1 cut(s)	89
AjuI	GAANNNNNNNTTGG	2 cut(s)	56, 88
AluBI	AGCT	1 cut(s)	164
AluI	AGCT	1 cut(s)	164
AoxI	GGCC	1 cut(s)	123
AsuHPI	GGTGA	1 cut(s)	214
BccI	CCATC	4 cut(s)	49, 92, 124, 172
BmrI	ACTGGG	1 cut(s)	195
BmuI	ACTGGG	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	195
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse1I	ACTGG	1 cut(s)	190
BseDI	CCNNGG	1 cut(s)	195
BseGI	GGATG	2 cut(s)	60, 217
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseNI	ACTGG	1 cut(s)	190
BshFI	GGCC	1 cut(s)	125
BslI	CCNNNNNNNGG	1 cut(s)	89
BsnI	GGCC	1 cut(s)	125
BspANI	GGCC	1 cut(s)	125
BsrI	ACTGG	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	195
Bst6I	CTCTTC	1 cut(s)	200
BstDSI	CCRYGG	1 cut(s)	195
BstF5I	GGATG	2 cut(s)	60, 217
BsuRI	GGCC	1 cut(s)	125
BtgI	CCRYGG	1 cut(s)	195
BtsCI	GGATG	2 cut(s)	60, 217
Csp6I	GTAC	1 cut(s)	183
CviJI	RGCY	4 cut(s)	70, 82, 125, 164
CviKI_1	RGCY	4 cut(s)	70, 82, 125, 164
CviQI	GTAC	1 cut(s)	183
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
FokI	GGATG	2 cut(s)	67, 224
HaeIII	GGCC	1 cut(s)	125
HphI	GGTGA	1 cut(s)	214
Hpy188III	TCNNGA	1 cut(s)	29
HpyAV	CCTTC	2 cut(s)	115, 143
HpyCH4IV	ACGT	1 cut(s)	45
HpySE526I	ACGT	1 cut(s)	45
LpnPI	CCDG	4 cut(s)	42, 73, 123, 171
MaeII	ACGT	1 cut(s)	45
MboII	GAAGA	1 cut(s)	217
MnlI	CCTC	4 cut(s)	54, 86, 201, 208
MseI	TTAA	1 cut(s)	78
RsaI	GTAC	1 cut(s)	184
RsaNI	GTAC	1 cut(s)	183
SaqAI	TTAA	1 cut(s)	78
SetI	ASST	3 cut(s)	11, 48, 166
SgeI	CNNG	8 cut(s)	19, 41, 61, 100, 122, 139, 198, 208
TaiI	ACGT	1 cut(s)	48
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TspDTI	ATGAA	2 cut(s)	134, 162
TspGWI	ACGGA	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.