Rroxscaffold_7G00169120

Cysteine-rich receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
N/A
Physical Location & Seq
Forward (+)
9812330 .. 9818680
6351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00169120.1

Sequence Viewer

Length: 504 bp
ATGGCTTCAGTTAATCATATGCTTACTAGCAACTCTCTCACTACTCTCCCAGTACCATCAAAACCAGCTTTCCTGATTGGATCCGACATATCCGACTTAGATCAATCCCACAGTAACTCTATTCCAAAATCAGTGAATGAGGTTTCGATTACAGAACTATATCCACACTTAATAATTCCAACCCCAAGACTCTCCCTCTTCGCCCCTCACTGCCAGGGACCTTCTCCTCCTCTTTTTTTCCTCCGATTAAGTGGTGTGCAGCGGGCGGCGGAGCGGCAGCTGACAAAGGGATTGAGCCAAGATACTCCCACAGCTAAGAACCAAAGAAGAGATTTAACAGAGCAGAGCGGCGGTGGCGGAGGACCCAAAAGGTATGCTGGATTATATCTTCCAACAAAAGAAGATATAGCTCTGCTTGTGTTTCTCTCTGTACTAATCAAAAATGGGTCAAAGGATTTTAAAATGAGGTGGTGGTTTGAAAATGGAGGGATACGGCAAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

167

Amino Acids

18.38

Weight (kDa)

9.37

Isoelectric Point (pI)

48.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 274, 348
AciI CCGC 7 cut(s) 262, 266, 269, 274, 348, 351, 357
AclWI GGATC 2 cut(s) 75, 88
AfaI GTAC 2 cut(s) 54, 432
AgsI TTSAA 1 cut(s) 479
AjnI CCWGG 1 cut(s) 213
AluBI AGCT 4 cut(s) 68, 280, 314, 410
AluI AGCT 4 cut(s) 68, 280, 314, 410
AlwI GGATC 2 cut(s) 75, 88
ApeKI GCWGC 2 cut(s) 259, 277
AspS9I GGNCC 2 cut(s) 218, 362
AvaII GGWCC 2 cut(s) 218, 362
BamHI GGATCC 1 cut(s) 80
BbvI GCAGC 2 cut(s) 271, 289
BccI CCATC 1 cut(s) 64
BciT130I CCWGG 1 cut(s) 215
BciVI GTATCC 1 cut(s) 483
BfaI CTAG 1 cut(s) 27
BfuI GTATCC 1 cut(s) 483
BisI GCNGC 5 cut(s) 260, 267, 275, 278, 349
BlsI GCNGC 5 cut(s) 261, 268, 276, 279, 350
Bme1390I CCNGG 1 cut(s) 215
Bme18I GGWCC 2 cut(s) 218, 362
BmgT120I GGNCC 2 cut(s) 218, 362
BmiI GGNNCC 3 cut(s) 82, 219, 364
BmrFI CCNGG 1 cut(s) 215
BmrI ACTGGG 1 cut(s) 44
BmuI ACTGGG 1 cut(s) 44
BsaJI CCNNGG 1 cut(s) 214
Bse1I ACTGG 1 cut(s) 50
BseBI CCWGG 1 cut(s) 215
BseDI CCNNGG 1 cut(s) 214
BseNI ACTGG 1 cut(s) 50
BseRI GAGGAG 2 cut(s) 216, 219
BseXI GCAGC 2 cut(s) 271, 289
BsgI GTGCAG 1 cut(s) 278
BslFI GGGAC 1 cut(s) 231
BsmFI GGGAC 1 cut(s) 231
Bsp143I GATC 2 cut(s) 80, 100
BspACI CCGC 7 cut(s) 262, 266, 269, 274, 348, 351, 357
BspLI GGNNCC 3 cut(s) 82, 219, 364
BspPI GGATC 2 cut(s) 75, 88
BsrBI CCGCTC 2 cut(s) 274, 348
BsrI ACTGG 1 cut(s) 50
BssECI CCNNGG 1 cut(s) 214
BssMI GATC 2 cut(s) 80, 100
Bst2UI CCWGG 1 cut(s) 215
Bst4CI ACNGT 1 cut(s) 113
Bst6I CTCTTC 2 cut(s) 203, 322
BstC8I GCNNGC 1 cut(s) 264
BstDEI CTNAG 2 cut(s) 97, 315
BstKTI GATC 2 cut(s) 83, 103
BstMBI GATC 2 cut(s) 80, 100
BstMWI GCNNNNNNNGC 1 cut(s) 354
BstNI CCWGG 1 cut(s) 215
BstSCI CCNGG 1 cut(s) 213
BstV1I GCAGC 2 cut(s) 271, 289
BstX2I RGATCY 1 cut(s) 80
BstYI RGATCY 1 cut(s) 80
BsuI GTATCC 1 cut(s) 483
BtsI GCAGTG 1 cut(s) 208
BtsIMutI CAGTG 2 cut(s) 138, 208
Cac8I GCNNGC 1 cut(s) 264
Cfr13I GGNCC 2 cut(s) 218, 362
Csp6I GTAC 2 cut(s) 53, 431
CviJI RGCY 6 cut(s) 5, 68, 280, 297, 314, 410
CviKI_1 RGCY 6 cut(s) 5, 68, 280, 297, 314, 410
CviQI GTAC 2 cut(s) 53, 431
DdeI CTNAG 2 cut(s) 97, 315
DpnI GATC 2 cut(s) 82, 102
DpnII GATC 2 cut(s) 80, 100
DraI TTTAAA 1 cut(s) 460
Eam1104I CTCTTC 2 cut(s) 203, 322
EarI CTCTTC 2 cut(s) 203, 322
EciI GGCGGA 2 cut(s) 284, 372
Eco47I GGWCC 2 cut(s) 218, 362
EcoO109I RGGNCCY 2 cut(s) 218, 362
EcoRII CCWGG 1 cut(s) 213
FaiI YATR 7 cut(s) 18, 20, 89, 160, 375, 385, 407
FaqI GGGAC 1 cut(s) 231
FauI CCCGC 1 cut(s) 255
FauNDI CATATG 1 cut(s) 18
Fnu4HI GCNGC 5 cut(s) 260, 267, 275, 278, 349
Fsp4HI GCNGC 5 cut(s) 260, 267, 275, 278, 349
FspBI CTAG 1 cut(s) 27
GluI GCNGC 5 cut(s) 260, 267, 275, 278, 349
HinfI GANTC 1 cut(s) 189
Hpy188I TCNGA 3 cut(s) 85, 94, 245
Hpy188III TCNNGA 1 cut(s) 73
HpyAV CCTTC 1 cut(s) 231
HpyCH4III ACNGT 1 cut(s) 113
HpyCH4V TGCA 1 cut(s) 259
HpyF10VI GCNNNNNNNGC 1 cut(s) 354
HpyF3I CTNAG 2 cut(s) 97, 315
Kzo9I GATC 2 cut(s) 80, 100
LmnI GCTCC 1 cut(s) 271
LpnPI CCDG 6 cut(s) 63, 78, 86, 200, 227, 363
Lsp1109I GCAGC 2 cut(s) 271, 289
MaeI CTAG 1 cut(s) 27
MaeIII GTNAC 1 cut(s) 113
MalI GATC 2 cut(s) 82, 102
MbiI CCGCTC 2 cut(s) 274, 348
MboI GATC 2 cut(s) 80, 100
MboII GAAGA 4 cut(s) 190, 339, 380, 413
MflI RGATCY 1 cut(s) 80
MluCI AATT 1 cut(s) 174
MlyI GAGTC 1 cut(s) 183
MmeI TCCRAC 4 cut(s) 108, 117, 203, 416
MnlI CCTC 9 cut(s) 133, 206, 216, 237, 240, 251, 353, 459, 479
MseI TTAA 5 cut(s) 12, 170, 248, 335, 459
MspA1I CMGCKG 2 cut(s) 262, 280
MspR9I CCNGG 1 cut(s) 215
MvaI CCWGG 1 cut(s) 215
MwoI GCNNNNNNNGC 1 cut(s) 354
NdeI CATATG 1 cut(s) 18
NdeII GATC 2 cut(s) 80, 100
NlaIV GGNNCC 3 cut(s) 82, 219, 364
PkrI GCNGC 5 cut(s) 261, 268, 276, 279, 350
PleI GAGTC 1 cut(s) 183
PpsI GAGTC 1 cut(s) 183
PpuMI RGGWCCY 2 cut(s) 218, 362
Psp5II RGGWCCY 2 cut(s) 218, 362
Psp6I CCWGG 1 cut(s) 213
PspGI CCWGG 1 cut(s) 213
PspN4I GGNNCC 3 cut(s) 82, 219, 364
PspPI GGNCC 2 cut(s) 218, 362
PspPPI RGGWCCY 2 cut(s) 218, 362
PsuI RGATCY 1 cut(s) 80
PvuII CAGCTG 1 cut(s) 280
RsaI GTAC 2 cut(s) 54, 432
RsaNI GTAC 2 cut(s) 53, 431
SaqAI TTAA 5 cut(s) 12, 170, 248, 335, 459
SatI GCNGC 5 cut(s) 260, 267, 275, 278, 349
Sau3AI GATC 2 cut(s) 80, 100
Sau96I GGNCC 2 cut(s) 218, 362
SchI GAGTC 1 cut(s) 183
ScrFI CCNGG 1 cut(s) 215
SetI ASST 8 cut(s) 70, 144, 223, 282, 316, 374, 412, 470
SinI GGWCC 2 cut(s) 218, 362
Sse9I AATT 1 cut(s) 174
SsiI CCGC 7 cut(s) 262, 266, 269, 274, 348, 351, 357
SspMI CTAG 1 cut(s) 27
StyD4I CCNGG 1 cut(s) 213
TaaI ACNGT 1 cut(s) 113
TaqI TCGA 1 cut(s) 146
TasI AATT 1 cut(s) 174
TatI WGTACW 1 cut(s) 430
TauI GCSGC 3 cut(s) 269, 277, 351
Tru1I TTAA 5 cut(s) 12, 170, 248, 335, 459
Tru9I TTAA 5 cut(s) 12, 170, 248, 335, 459
TscAI CASTG 2 cut(s) 138, 215
TseI GCWGC 2 cut(s) 259, 277
TspRI CASTG 2 cut(s) 138, 215
VpaK11BI GGWCC 2 cut(s) 218, 362
XspI CTAG 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.