Rroxscaffold_7G00181710

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
N/A
Physical Location & Seq
Reverse (-)
20777965 .. 20781363
3399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00181710.1

Sequence Viewer

Length: 1713 bp
ATGATTTTCAAATTTGAGGGAACCAGTGGTGATGCCTCATTTCATGGACGGTCACGTCTTACTCCATTTCGTACGAAATGCAAGACCAGGCCACCTCATCACCAAGAGCACAGGCATGAAGCTCTCATAAGCTGGAAGAACAGCTTTGATTATGCACAACCTTTTCTCAATTCATGGTCCCTCACAAACATAAATAACCTCTGCAACTGGACTGCGATTGTCTGCGACCCCAACACCAAAGCAGTCTCCGAAATTGACCTCTCAAACTTTCACATTACTGCAACACTAACTCAGTTCAATTTCAACATGTTTCTCGATCTCTTTCTTTTCAACCTCAATGGTAACAGTTTCACAGGGTCTATACCATCTTCCATTGGTAATCTTGGCAAGCTAACAGTCTTGGATTTGGGCAACAATCTGTTTGGACAGGAAGTTCGGGCGCAAATGGGCAAATTAACGGAGCTTCAGTTTCTAAGTCTCTACAACAACAATCTCAATGGTACCATTCCCTATCAGCTGGACAGTCTGAAAAAGGTACAATATTTGCTTCTTGGAAGGAACAAGTTAGACACTCCTAACTGGTCTAAATTTTCAGGCTTTCCTTTGTTAACATACCTGGATCTTTCTCTGAACAATTTGGATTCAGAATTCCCAGAATTTATATCTGAATGCAGGAACTTGACCTTGCTGGATTTGTCTGGAAATCGTTTGACTGGCCAGATAACTAAACTGGTAGTTACCAACATGGTTAAGCTTGAATATCTCAATCTCACCAATAACCTATTCCAAGGGCCAATGCCGTATAACTTTCCCAAGCTTAAACACCTTCATTTGGCACAAAACAACTTCAATGGTACAATTCCAGAAGATATTGGCTTCATATCTGGTCTGCAACGGGTTGACCTGTTTAACAATTCCCTTGAAAGCAAAATCCCATCCTCTGTAGGCCAACTCAGGGAGCTTCAGCACCTTGACATTGGCGAGAATTCCTTGAACTCTTCAATCCCTTCTGGCCTTGGTCTTTGTACAAACCTCTCTTATTTGGCCTTGGCTGTGAATAAACTCAGTGGGGAACTGCCTCTATCCTTGTCCAATCTCAAAAGCTTGGTGGAGTTGGGGTTATCTGATAATCTATTTACTGGGCCAATCTTGCCTTCTCTGGTCTCCAATTGGACTGAAATGATCTCTTTGCAACTCCAAAAGAATAGACTCAGTGGGAACCTTCCAGCCGAACTTGGCCTATCGAAAAGACTTGATATCCTCGATCTGCACAGCAATAACTTCTCTGGATCAATTCCCTCAGACATAGGAAACTTGCAAGCAATTGCAGAAGCTAAACCTAGGCTCGAATTTCCAGTTGCCATTGGGAATCTAAGCTTGTTGTTCAATCTCAGTCTCAGCAGGAACTACTTGACAGGAGTTATCCCTCGGTTTCTTGGCAAATTGACAAGGCTTGAGTTTCTTGATTTGTCTGATAATAATTTTACAGGGGTATTACCAGTCGACCCTAGAACGTTTGAGAGGTTAACAAGCTTGAACATAAGCCACAACAAATTATCAGGTGGAATACCAGAGGAGATTGTACTTGTTGGACACTTGGACCTAAGCAGCAATACATTCTCGGGATCACTACCATTAAACCTTGCCAAGCTTATAATGCTGGAGATTCTTAATGTCTCGCATAACCAACTCTCCGGGAATGGAAAATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

570

Amino Acids

63.3

Weight (kDa)

6.51

Isoelectric Point (pI)

26.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 154 - 213 2.5e-06 Leucine rich repeat
LRR_8 PF13855 187 - 237 4.8e-06 Leucine rich repeat
LRR_14 PF23598 271 - 374 3.1e-09 Leucine-rich repeat region
LRR_8 PF13855 463 - 519 4.7e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1655
AasI GACNNNNNNGTC 1 cut(s) 54
Acc65I GGTACC 1 cut(s) 500
AccB1I GGYRCC 1 cut(s) 500
AccI GTMKAC 1 cut(s) 1503
AclI AACGTT 1 cut(s) 1514
AclWI GGATC 3 cut(s) 627, 1297, 1633
AcoI YGGCCR 1 cut(s) 715
AcsI RAATTY 7 cut(s) 11, 587, 647, 656, 985, 1349, 1706
AcuI CTGAAG 2 cut(s) 449, 947
AfaI GTAC 6 cut(s) 73, 502, 537, 856, 1027, 1584
AfiI CCNNNNNNNGG 2 cut(s) 832, 955
AflIII ACRYGT 1 cut(s) 306
AjiI CACGTC 1 cut(s) 56
AjnI CCWGG 2 cut(s) 86, 615
AjuI GAANNNNNNNTTGG 4 cut(s) 767, 799, 1138, 1170
AloI GAACNNNNNNTCC 2 cut(s) 417, 449
Alw21I GWGCWC 1 cut(s) 111
Alw26I GTCTC 5 cut(s) 250, 482, 1168, 1400, 1681
AlwI GGATC 3 cut(s) 627, 1297, 1633
Ama87I CYCGRG 1 cut(s) 1621
AoxI GGCC 8 cut(s) 89, 715, 791, 946, 1012, 1044, 1142, 1237
ApeKI GCWGC 1 cut(s) 1608
ApoI RAATTY 7 cut(s) 11, 587, 647, 656, 985, 1349, 1706
ArsI GACNNNNNNTTYG 2 cut(s) 417, 449
Asp718I GGTACC 1 cut(s) 500
AspA2I CCTAGG 1 cut(s) 1340
AspLEI GCGC 1 cut(s) 442
AspS9I GGNCC 4 cut(s) 177, 791, 1142, 1600
AsuC2I CCSGG 1 cut(s) 1696
AsuHPI GGTGA 3 cut(s) 41, 92, 763
AvaI CYCGRG 1 cut(s) 1621
AvaII GGWCC 2 cut(s) 177, 1600
AvrII CCTAGG 1 cut(s) 1340
BalI TGGCCA 1 cut(s) 717
BanI GGYRCC 1 cut(s) 500
Bbv12I GWGCWC 1 cut(s) 111
BbvI GCAGC 1 cut(s) 1620
BccI CCATC 2 cut(s) 373, 943
BceAI ACGGC 1 cut(s) 784
BciT130I CCWGG 2 cut(s) 88, 617
BcnI CCSGG 1 cut(s) 1696
BcoDI GTCTC 5 cut(s) 250, 482, 1168, 1400, 1681
BfaI CTAG 3 cut(s) 1341, 1509, 1711
BfmI CTRYAG 1 cut(s) 942
BisI GCNGC 1 cut(s) 1609
BlnI CCTAGG 1 cut(s) 1340
BlsI GCNGC 1 cut(s) 1610
Bme1390I CCNGG 3 cut(s) 88, 617, 1696
Bme18I GGWCC 2 cut(s) 177, 1600
BmeT110I CYCGRG 1 cut(s) 1621
BmgBI CACGTC 1 cut(s) 56
BmgT120I GGNCC 4 cut(s) 177, 791, 1142, 1600
BmiI GGNNCC 4 cut(s) 22, 179, 502, 1220
BmrFI CCNGG 3 cut(s) 88, 617, 1696
BmrI ACTGGG 1 cut(s) 1149
BmsI GCATC 1 cut(s) 22
BmuI ACTGGG 1 cut(s) 1149
BpmI CTGGAG 1 cut(s) 1682
Bpu10I CCTNAGC 1 cut(s) 1604
BpuEI CTTGAG 1 cut(s) 1475
BpuMI CCSGG 1 cut(s) 1696
BsaI GGTCTC 1 cut(s) 1168
BsaJI CCNNGG 5 cut(s) 787, 1015, 1047, 1340, 1427
BsaXI ACNNNNNCTCC 6 cut(s) 452, 482, 1103, 1133, 1676, 1706
Bsc4I CCNNNNNNNGG 2 cut(s) 832, 955
Bse1I ACTGG 8 cut(s) 24, 212, 584, 718, 735, 1144, 1355, 1499
BseBI CCWGG 2 cut(s) 88, 617
BseDI CCNNGG 5 cut(s) 787, 1015, 1047, 1340, 1427
BseGI GGATG 1 cut(s) 935
BseLI CCNNNNNNNGG 2 cut(s) 832, 955
BseMII CTCAG 7 cut(s) 305, 967, 1078, 1225, 1314, 1405, 1411
BseNI ACTGG 8 cut(s) 24, 212, 584, 718, 735, 1144, 1355, 1499
BseRI GAGGAG 1 cut(s) 1589
BseXI GCAGC 1 cut(s) 1620
BsgI GTGCAG 1 cut(s) 1253
BshFI GGCC 8 cut(s) 91, 717, 793, 948, 1014, 1046, 1144, 1239
BshNI GGYRCC 1 cut(s) 500
BsiHKAI GWGCWC 1 cut(s) 111
BsiHKCI CYCGRG 1 cut(s) 1621
BsiSI CCGG 1 cut(s) 1695
BsiWI CGTACG 1 cut(s) 71
BslFI GGGAC 1 cut(s) 163
BslI CCNNNNNNNGG 2 cut(s) 832, 955
BsmAI GTCTC 5 cut(s) 250, 482, 1168, 1400, 1681
BsmFI GGGAC 1 cut(s) 163
BsmI GAATGC 1 cut(s) 674
BsnI GGCC 8 cut(s) 91, 717, 793, 948, 1014, 1046, 1144, 1239
Bso31I GGTCTC 1 cut(s) 1168
BsoBI CYCGRG 1 cut(s) 1621
Bsp1286I GDGCHC 1 cut(s) 111
Bsp1407I TGTACA 1 cut(s) 1025
Bsp143I GATC 6 cut(s) 316, 619, 1182, 1264, 1289, 1625
BspANI GGCC 8 cut(s) 91, 717, 793, 948, 1014, 1046, 1144, 1239
BspCNI CTCAG 7 cut(s) 304, 966, 1077, 1224, 1313, 1404, 1410
BspLI GGNNCC 4 cut(s) 22, 179, 502, 1220
BspPI GGATC 3 cut(s) 627, 1297, 1633
BspT107I GGYRCC 1 cut(s) 500
BspTNI GGTCTC 1 cut(s) 1168
BsrGI TGTACA 1 cut(s) 1025
BsrI ACTGG 8 cut(s) 24, 212, 584, 718, 735, 1144, 1355, 1499
BssECI CCNNGG 5 cut(s) 787, 1015, 1047, 1340, 1427
BssMI GATC 6 cut(s) 316, 619, 1182, 1264, 1289, 1625
BssT1I CCWWGG 4 cut(s) 787, 1015, 1047, 1340
Bst2UI CCWGG 2 cut(s) 88, 617
Bst4CI ACNGT 4 cut(s) 51, 347, 397, 524
Bst6I CTCTTC 1 cut(s) 1003
BstAUI TGTACA 1 cut(s) 1025
BstC8I GCNNGC 2 cut(s) 389, 1320
BstF5I GGATG 1 cut(s) 935
BstHHI GCGC 1 cut(s) 442
BstKTI GATC 6 cut(s) 319, 622, 1185, 1267, 1292, 1628
BstMAI GTCTC 5 cut(s) 250, 482, 1168, 1400, 1681
BstMBI GATC 6 cut(s) 316, 619, 1182, 1264, 1289, 1625
BstMWI GCNNNNNNNGC 2 cut(s) 1150, 1657
BstNI CCWGG 2 cut(s) 88, 617
BstNSI RCATGY 1 cut(s) 310
BstSCI CCNGG 3 cut(s) 86, 615, 1694
BstSFI CTRYAG 1 cut(s) 942
BstV1I GCAGC 1 cut(s) 1620
BstX2I RGATCY 1 cut(s) 619
BstYI RGATCY 1 cut(s) 619
BsuRI GGCC 8 cut(s) 91, 717, 793, 948, 1014, 1046, 1144, 1239
BtrI CACGTC 1 cut(s) 56
BtsCI GGATG 1 cut(s) 935
BtsIMutI CAGTG 3 cut(s) 31, 1072, 1219
Cac8I GCNNGC 2 cut(s) 389, 1320
CfoI GCGC 1 cut(s) 442
Cfr13I GGNCC 4 cut(s) 177, 791, 1142, 1600
Csp6I GTAC 6 cut(s) 72, 501, 536, 855, 1026, 1583
CviAII CATG 5 cut(s) 44, 116, 174, 307, 745
CviQI GTAC 6 cut(s) 72, 501, 536, 855, 1026, 1583
DpnI GATC 6 cut(s) 318, 621, 1184, 1266, 1291, 1627
DpnII GATC 6 cut(s) 316, 619, 1182, 1264, 1289, 1625
DrdI GACNNNNNNGTC 1 cut(s) 54
DseDI GACNNNNNNGTC 1 cut(s) 54
EaeI YGGCCR 1 cut(s) 715
Eam1104I CTCTTC 1 cut(s) 1003
EarI CTCTTC 1 cut(s) 1003
Eco130I CCWWGG 4 cut(s) 787, 1015, 1047, 1340
Eco31I GGTCTC 1 cut(s) 1168
Eco32I GATATC 1 cut(s) 1258
Eco47I GGWCC 2 cut(s) 177, 1600
Eco57I CTGAAG 2 cut(s) 449, 947
Eco88I CYCGRG 1 cut(s) 1621
EcoRI GAATTC 2 cut(s) 647, 985
EcoRII CCWGG 2 cut(s) 86, 615
EcoRV GATATC 1 cut(s) 1258
EcoT14I CCWWGG 4 cut(s) 787, 1015, 1047, 1340
ErhI CCWWGG 4 cut(s) 787, 1015, 1047, 1340
FaeI CATG 5 cut(s) 47, 119, 177, 310, 748
FalI AAGNNNNNCTT 2 cut(s) 128, 160
FaqI GGGAC 1 cut(s) 163
FatI CATG 5 cut(s) 43, 115, 173, 306, 744
FblI GTMKAC 1 cut(s) 1503
Fnu4HI GCNGC 1 cut(s) 1609
FokI GGATG 1 cut(s) 922
Fsp4HI GCNGC 1 cut(s) 1609
FspBI CTAG 3 cut(s) 1341, 1509, 1711
GlaI GCGC 1 cut(s) 441
GluI GCNGC 1 cut(s) 1609
GsuI CTGGAG 1 cut(s) 1682
HaeIII GGCC 8 cut(s) 91, 717, 793, 948, 1014, 1046, 1144, 1239
HapII CCGG 1 cut(s) 1695
HhaI GCGC 1 cut(s) 442
Hin1II CATG 5 cut(s) 47, 119, 177, 310, 748
Hin6I GCGC 1 cut(s) 440
HinP1I GCGC 1 cut(s) 440
HincII GTYRAC 4 cut(s) 609, 901, 1504, 1527
HindII GTYRAC 4 cut(s) 609, 901, 1504, 1527
HindIII AAGCTT 6 cut(s) 752, 815, 1102, 1375, 1531, 1649
HinfI GANTC 4 cut(s) 641, 1209, 1369, 1666
HpaI GTTAAC 2 cut(s) 609, 1527
HpaII CCGG 1 cut(s) 1695
HphI GGTGA 3 cut(s) 41, 92, 763
Hpy166II GTNNAC 4 cut(s) 609, 901, 1504, 1527
Hpy188I TCNGA 8 cut(s) 250, 528, 630, 646, 667, 1126, 1303, 1474
Hpy188III TCNNGA 6 cut(s) 314, 699, 863, 1287, 1463, 1623
Hpy8I GTNNAC 4 cut(s) 609, 901, 1504, 1527
HpyAV CCTTC 5 cut(s) 549, 836, 1017, 1164, 1232
HpyCH4III ACNGT 4 cut(s) 51, 347, 397, 524
HpyCH4IV ACGT 2 cut(s) 55, 1514
HpyF10VI GCNNNNNNNGC 2 cut(s) 1150, 1657
HpySE526I ACGT 2 cut(s) 55, 1514
Hsp92II CATG 5 cut(s) 47, 119, 177, 310, 748
HspAI GCGC 1 cut(s) 440
KpnI GGTACC 1 cut(s) 504
KspAI GTTAAC 2 cut(s) 609, 1527
Kzo9I GATC 6 cut(s) 316, 619, 1182, 1264, 1289, 1625
LmnI GCTCC 2 cut(s) 460, 958
Lsp1109I GCAGC 1 cut(s) 1620
LweI GCATC 1 cut(s) 22
MaeI CTAG 3 cut(s) 1341, 1509, 1711
MaeII ACGT 2 cut(s) 55, 1514
MaeIII GTNAC 3 cut(s) 51, 341, 736
MalI GATC 6 cut(s) 318, 621, 1184, 1266, 1291, 1627
MboI GATC 6 cut(s) 316, 619, 1182, 1264, 1289, 1625
MboII GAAGA 4 cut(s) 148, 360, 878, 990
MfeI CAATTG 2 cut(s) 1168, 1323
MflI RGATCY 1 cut(s) 619
MhlI GDGCHC 1 cut(s) 111
MlsI TGGCCA 1 cut(s) 717
MluNI TGGCCA 1 cut(s) 717
MlyI GAGTC 1 cut(s) 1203
MmeI TCCRAC 1 cut(s) 1570
Mox20I TGGCCA 1 cut(s) 717
MscI TGGCCA 1 cut(s) 717
MseI TTAA 8 cut(s) 455, 608, 750, 819, 909, 1526, 1637, 1671
MslI CAYNNNNRTG 1 cut(s) 114
Msp20I TGGCCA 1 cut(s) 717
MspA1I CMGCKG 1 cut(s) 517
MspI CCGG 1 cut(s) 1695
MspR9I CCNGG 3 cut(s) 88, 617, 1696
MunI CAATTG 2 cut(s) 1168, 1323
Mva1269I GAATGC 1 cut(s) 674
MvaI CCWGG 2 cut(s) 88, 617
MwoI GCNNNNNNNGC 2 cut(s) 1150, 1657
NciI CCSGG 1 cut(s) 1696
NdeII GATC 6 cut(s) 316, 619, 1182, 1264, 1289, 1625
NlaIII CATG 5 cut(s) 47, 119, 177, 310, 748
NlaIV GGNNCC 4 cut(s) 22, 179, 502, 1220
NmuCI GTSAC 1 cut(s) 51
NspI RCATGY 1 cut(s) 310
PciI ACATGT 1 cut(s) 306
PctI GAATGC 1 cut(s) 674
PfeI GAWTC 3 cut(s) 641, 1369, 1666
Pfl23II CGTACG 1 cut(s) 71
PfoI TCCNGGA 1 cut(s) 1694
PkrI GCNGC 1 cut(s) 1610
PleI GAGTC 1 cut(s) 1203
PpsI GAGTC 1 cut(s) 1203
PscI ACATGT 1 cut(s) 306
PsiI TTATAA 1 cut(s) 1655
Psp1406I AACGTT 1 cut(s) 1514
Psp6I CCWGG 2 cut(s) 86, 615
PspGI CCWGG 2 cut(s) 86, 615
PspLI CGTACG 1 cut(s) 71
PspN4I GGNNCC 4 cut(s) 22, 179, 502, 1220
PspPI GGNCC 4 cut(s) 177, 791, 1142, 1600
PsuI RGATCY 1 cut(s) 619
PvuII CAGCTG 1 cut(s) 517
RsaI GTAC 6 cut(s) 73, 502, 537, 856, 1027, 1584
RsaNI GTAC 6 cut(s) 72, 501, 536, 855, 1026, 1583
RseI CAYNNNNRTG 1 cut(s) 114
SalI GTCGAC 1 cut(s) 1502
SaqAI TTAA 8 cut(s) 455, 608, 750, 819, 909, 1526, 1637, 1671
SatI GCNGC 1 cut(s) 1609
Sau3AI GATC 6 cut(s) 316, 619, 1182, 1264, 1289, 1625
Sau96I GGNCC 4 cut(s) 177, 791, 1142, 1600
SchI GAGTC 1 cut(s) 1203
ScrFI CCNGG 3 cut(s) 88, 617, 1696
SduI GDGCHC 1 cut(s) 111
SfaNI GCATC 1 cut(s) 22
SfcI CTRYAG 1 cut(s) 942
SinI GGWCC 2 cut(s) 177, 1600
SmiMI CAYNNNNRTG 1 cut(s) 114
SmlI CTYRAG 1 cut(s) 1454
SmoI CTYRAG 1 cut(s) 1454
SspI AATATT 1 cut(s) 542
SspMI CTAG 3 cut(s) 1341, 1509, 1711
StyD4I CCNGG 3 cut(s) 86, 615, 1694
StyI CCWWGG 4 cut(s) 787, 1015, 1047, 1340
TaaI ACNGT 4 cut(s) 51, 347, 397, 524
TaiI ACGT 2 cut(s) 58, 1517
TaqI TCGA 5 cut(s) 315, 1244, 1263, 1347, 1503
TatI WGTACW 2 cut(s) 1025, 1582
TfiI GAWTC 3 cut(s) 641, 1369, 1666
Tru1I TTAA 8 cut(s) 455, 608, 750, 819, 909, 1526, 1637, 1671
Tru9I TTAA 8 cut(s) 455, 608, 750, 819, 909, 1526, 1637, 1671
TscAI CASTG 3 cut(s) 31, 1072, 1219
TseFI GTSAC 1 cut(s) 51
TseI GCWGC 1 cut(s) 1608
Tsp45I GTSAC 1 cut(s) 51
TspDTI ATGAA 5 cut(s) 32, 132, 162, 818, 868
TspGWI ACGGA 1 cut(s) 473
TspRI CASTG 3 cut(s) 31, 1072, 1219
VpaK11BI GGWCC 2 cut(s) 177, 1600
XapI RAATTY 7 cut(s) 11, 587, 647, 656, 985, 1349, 1706
XceI RCATGY 1 cut(s) 310
XmaJI CCTAGG 1 cut(s) 1340
XmiI GTMKAC 1 cut(s) 1503
XspI CTAG 3 cut(s) 1341, 1509, 1711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.