Rroxscaffold_7G00181790

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
N/A
Physical Location & Seq
Reverse (-)
20859761 .. 20864010
4250 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00181790.1

Sequence Viewer

Length: 318 bp
ATGGCAGATGGTATTGCCCCTGTGAAATTGTTGCCATTGAGGTTGAAATGGGTGAGATTCAGGAACTGGGTGAAGTCCAGTCCTGTTAGTGTTGCAGTGAGGTTGAAATTTGAGAGGTCAATCTGGGAAACTGTTTTGGTTTTGGGGTCACAGACAATGGAGGTCCAGTTGCAGAGGCTGTTGATGTTTGTGAGGGACCATGAACTGAGAGAAGGTGGGGGAGAGAAAAAGCTGCTCTTCCAGCTAACCAAAGCCTCTGCTTGTGTTCTGGGTGATGAGGTTGCCTTCAATGGAAGCCATGAGAGCAAGAAAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

105

Amino Acids

11.97

Weight (kDa)

9.91

Isoelectric Point (pI)

39.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 107
AgsI TTSAA 3 cut(s) 46, 106, 289
AluBI AGCT 2 cut(s) 232, 244
AluI AGCT 2 cut(s) 232, 244
AlwNI CAGNNNCTG 2 cut(s) 66, 178
ApeKI GCWGC 1 cut(s) 232
ApoI RAATTY 1 cut(s) 107
AspS9I GGNCC 2 cut(s) 163, 196
AsuHPI GGTGA 3 cut(s) 64, 82, 284
AvaII GGWCC 2 cut(s) 163, 196
BbvI GCAGC 1 cut(s) 219
BccI CCATC 1 cut(s) 2
BisI GCNGC 1 cut(s) 233
BlsI GCNGC 1 cut(s) 234
Bme18I GGWCC 2 cut(s) 163, 196
BmgT120I GGNCC 2 cut(s) 163, 196
BmiI GGNNCC 1 cut(s) 197
BmrI ACTGGG 1 cut(s) 76
BmuI ACTGGG 1 cut(s) 76
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bse1I ACTGG 3 cut(s) 71, 78, 166
BseMII CTCAG 1 cut(s) 197
BseNI ACTGG 3 cut(s) 71, 78, 166
BseXI GCAGC 1 cut(s) 219
BslFI GGGAC 1 cut(s) 209
BsmFI GGGAC 1 cut(s) 209
BspCNI CTCAG 1 cut(s) 198
BspLI GGNNCC 1 cut(s) 197
BspQI GCTCTTC 1 cut(s) 242
BsrI ACTGG 3 cut(s) 71, 78, 166
Bst4CI ACNGT 1 cut(s) 133
Bst6I CTCTTC 1 cut(s) 242
BstDEI CTNAG 1 cut(s) 206
BstMWI GCNNNNNNNGC 2 cut(s) 241, 303
BstV1I GCAGC 1 cut(s) 219
BtsI GCAGTG 1 cut(s) 102
BtsIMutI CAGTG 1 cut(s) 102
CaiI CAGNNNCTG 2 cut(s) 66, 178
Cfr13I GGNCC 2 cut(s) 163, 196
CviAII CATG 2 cut(s) 200, 299
CviJI RGCY 5 cut(s) 178, 232, 244, 254, 297
CviKI_1 RGCY 5 cut(s) 178, 232, 244, 254, 297
DdeI CTNAG 1 cut(s) 206
Eam1104I CTCTTC 1 cut(s) 242
EarI CTCTTC 1 cut(s) 242
Eco47I GGWCC 2 cut(s) 163, 196
FaeI CATG 2 cut(s) 203, 302
FaiI YATR 2 cut(s) 201, 300
FalI AAGNNNNNCTT 2 cut(s) 221, 253
FaqI GGGAC 1 cut(s) 209
FatI CATG 2 cut(s) 199, 298
Fnu4HI GCNGC 1 cut(s) 233
Fsp4HI GCNGC 1 cut(s) 233
GluI GCNGC 1 cut(s) 233
Hin1II CATG 2 cut(s) 203, 302
HinfI GANTC 1 cut(s) 57
HphI GGTGA 3 cut(s) 64, 82, 284
Hpy188III TCNNGA 1 cut(s) 61
HpyAV CCTTC 2 cut(s) 206, 295
HpyCH4III ACNGT 1 cut(s) 133
HpyCH4V TGCA 2 cut(s) 95, 172
HpyF10VI GCNNNNNNNGC 2 cut(s) 241, 303
HpyF3I CTNAG 1 cut(s) 206
Hsp92II CATG 2 cut(s) 203, 302
LguI GCTCTTC 1 cut(s) 242
LpnPI CCDG 9 cut(s) 33, 46, 52, 91, 96, 109, 179, 254, 254
Lsp1109I GCAGC 1 cut(s) 219
MaeIII GTNAC 1 cut(s) 147
MboII GAAGA 1 cut(s) 229
MluCI AATT 2 cut(s) 26, 107
MnlI CCTC 8 cut(s) 33, 93, 108, 154, 168, 186, 265, 271
MwoI GCNNNNNNNGC 2 cut(s) 241, 303
NlaIII CATG 2 cut(s) 203, 302
NlaIV GGNNCC 1 cut(s) 197
NmuCI GTSAC 1 cut(s) 147
PciSI GCTCTTC 1 cut(s) 242
PfeI GAWTC 1 cut(s) 57
PkrI GCNGC 1 cut(s) 234
PspN4I GGNNCC 1 cut(s) 197
PspPI GGNCC 2 cut(s) 163, 196
PstNI CAGNNNCTG 2 cut(s) 66, 178
SapI GCTCTTC 1 cut(s) 242
SatI GCNGC 1 cut(s) 233
Sau96I GGNCC 2 cut(s) 163, 196
SetI ASST 8 cut(s) 44, 104, 119, 165, 217, 234, 246, 282
SinI GGWCC 2 cut(s) 163, 196
Sse9I AATT 2 cut(s) 26, 107
TaaI ACNGT 1 cut(s) 133
TasI AATT 2 cut(s) 26, 107
TfiI GAWTC 1 cut(s) 57
TscAI CASTG 1 cut(s) 102
TseFI GTSAC 1 cut(s) 147
TseI GCWGC 1 cut(s) 232
Tsp45I GTSAC 1 cut(s) 147
TspDTI ATGAA 1 cut(s) 216
TspRI CASTG 1 cut(s) 102
VpaK11BI GGWCC 2 cut(s) 163, 196
XapI RAATTY 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.