Rroxscaffold_7G00187730
WRKY Family

protease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
N/A
Physical Location & Seq
Forward (+)
27135936 .. 27137556
1621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00187730.1

Sequence Viewer

Length: 474 bp
ATGCGCCGAACAGTCTACCAAGCCTCCGGCCTCCGTCCCCTAAGCCCCAAGCCGTCGCCGCCCGAAAGGCCGGTGTTGCATCGCCGCCCTCGCTTTCTAAATGACATCATCATCGAATTCTACTTCCTCCATATTTCTAATGCCCTCCTTCAATCCCATGAGTCGTTCCGAGATGACATCCTTTTGGTTTCGCCTGCCCTCTCATTCTTTCTGCAGCAGGATTTTGGGGATGACTCCCATGTCAAAGGCTTTGCGGAGTCCAACAAAGTAGATAGAAAGCAGAAATGTGGGTGTACTGAGGGTATTGGAAGCTTGTTTTTTAGCGGAGCTTCTTCCACCCACCTAGGTGGGTGCTCACCTGGGGACTTTAACTGTGCGTGCAATACACGCACTGTTAGGACTGTAGGACCTCTGTCTTTGTTCCTTCATAGCTTCTATCAGCTTCCAATTTCACCTTCGTTCCACCATGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 WRKY

Protein Analysis

157

Amino Acids

17.52

Weight (kDa)

8.69

Isoelectric Point (pI)

71.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 239
AccI GTMKAC 1 cut(s) 15
AciI CCGC 4 cut(s) 59, 85, 254, 324
AcsI RAATTY 1 cut(s) 116
AfaI GTAC 1 cut(s) 295
AgsI TTSAA 1 cut(s) 152
AjnI CCWGG 1 cut(s) 358
AjuI GAANNNNNNNTTGG 2 cut(s) 439, 471
AleI CACNNNNGTG 1 cut(s) 345
AluBI AGCT 4 cut(s) 312, 329, 432, 442
AluI AGCT 4 cut(s) 312, 329, 432, 442
Alw21I GWGCWC 1 cut(s) 356
AoxI GGCC 2 cut(s) 28, 68
ApeKI GCWGC 1 cut(s) 214
ApoI RAATTY 1 cut(s) 116
AspA2I CCTAGG 1 cut(s) 343
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 1 cut(s) 407
AsuHPI GGTGA 2 cut(s) 348, 444
AvaII GGWCC 1 cut(s) 407
AvrII CCTAGG 1 cut(s) 343
Bbv12I GWGCWC 1 cut(s) 356
BbvI GCAGC 1 cut(s) 226
BceAI ACGGC 1 cut(s) 37
BciT130I CCWGG 1 cut(s) 360
BfaI CTAG 1 cut(s) 344
BfmI CTRYAG 2 cut(s) 212, 402
BglI GCCNNNNNGGC 1 cut(s) 67
BisI GCNGC 3 cut(s) 59, 85, 215
BlnI CCTAGG 1 cut(s) 343
BlsI GCNGC 3 cut(s) 60, 86, 216
Bme1390I CCNGG 1 cut(s) 360
Bme18I GGWCC 1 cut(s) 407
BmgT120I GGNCC 1 cut(s) 407
BmrFI CCNGG 1 cut(s) 360
BmsI GCATC 1 cut(s) 88
BoxI GACNNNNGTC 1 cut(s) 412
Bpu10I CCTNAGC 1 cut(s) 41
BsaJI CCNNGG 3 cut(s) 343, 359, 466
BsaXI ACNNNNNCTCC 2 cut(s) 8, 38
Bse118I RCCGGY 1 cut(s) 70
BseBI CCWGG 1 cut(s) 360
BseDI CCNNGG 3 cut(s) 343, 359, 466
BseGI GGATG 2 cut(s) 177, 235
BseMII CTCAG 1 cut(s) 288
BseXI GCAGC 1 cut(s) 226
BshFI GGCC 2 cut(s) 30, 70
BsiHKAI GWGCWC 1 cut(s) 356
BsiSI CCGG 2 cut(s) 27, 71
BslFI GGGAC 2 cut(s) 21, 377
BsmFI GGGAC 2 cut(s) 21, 377
BsnI GGCC 2 cut(s) 30, 70
Bsp1286I GDGCHC 1 cut(s) 356
Bsp19I CCATGG 1 cut(s) 466
BspACI CCGC 4 cut(s) 59, 85, 254, 324
BspANI GGCC 2 cut(s) 30, 70
BspCNI CTCAG 1 cut(s) 289
BspMAI CTGCAG 1 cut(s) 216
BsrFI RCCGGY 1 cut(s) 70
BssAI RCCGGY 1 cut(s) 70
BssECI CCNNGG 3 cut(s) 343, 359, 466
BssT1I CCWWGG 2 cut(s) 343, 466
Bst2UI CCWGG 1 cut(s) 360
Bst4CI ACNGT 4 cut(s) 13, 374, 394, 403
BstC8I GCNNGC 2 cut(s) 195, 379
BstDEI CTNAG 2 cut(s) 41, 297
BstDSI CCRYGG 1 cut(s) 466
BstF5I GGATG 2 cut(s) 177, 235
BstHHI GCGC 1 cut(s) 6
BstMWI GCNNNNNNNGC 5 cut(s) 58, 67, 76, 90, 387
BstNI CCWGG 1 cut(s) 360
BstPAI GACNNNNGTC 1 cut(s) 412
BstSCI CCNGG 1 cut(s) 358
BstSFI CTRYAG 2 cut(s) 212, 402
BstV1I GCAGC 1 cut(s) 226
BstXI CCANNNNNNTGG 1 cut(s) 347
BsuRI GGCC 2 cut(s) 30, 70
BtgI CCRYGG 1 cut(s) 466
BtgZI GCGATG 1 cut(s) 65
BtsCI GGATG 2 cut(s) 177, 235
BtsIMutI CAGTG 1 cut(s) 390
Cac8I GCNNGC 2 cut(s) 195, 379
CfoI GCGC 1 cut(s) 6
Cfr10I RCCGGY 1 cut(s) 70
Cfr13I GGNCC 1 cut(s) 407
Csp6I GTAC 1 cut(s) 294
CviAII CATG 3 cut(s) 158, 239, 467
CviQI GTAC 1 cut(s) 294
DdeI CTNAG 2 cut(s) 41, 297
DrdI GACNNNNNNGTC 1 cut(s) 239
DseDI GACNNNNNNGTC 1 cut(s) 239
Eco130I CCWWGG 2 cut(s) 343, 466
Eco47I GGWCC 1 cut(s) 407
EcoO109I RGGNCCY 1 cut(s) 407
EcoRI GAATTC 1 cut(s) 116
EcoRII CCWGG 1 cut(s) 358
EcoT14I CCWWGG 2 cut(s) 343, 466
ErhI CCWWGG 2 cut(s) 343, 466
FaeI CATG 3 cut(s) 161, 242, 470
FaiI YATR 5 cut(s) 132, 159, 240, 429, 468
FaqI GGGAC 2 cut(s) 21, 377
FatI CATG 3 cut(s) 157, 238, 466
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 3 cut(s) 59, 85, 215
FokI GGATG 2 cut(s) 164, 242
Fsp4HI GCNGC 3 cut(s) 59, 85, 215
FspBI CTAG 1 cut(s) 344
GlaI GCGC 1 cut(s) 5
GluI GCNGC 3 cut(s) 59, 85, 215
HaeIII GGCC 2 cut(s) 30, 70
HapII CCGG 2 cut(s) 27, 71
HhaI GCGC 1 cut(s) 6
Hin1II CATG 3 cut(s) 161, 242, 470
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HindIII AAGCTT 1 cut(s) 310
HinfI GANTC 3 cut(s) 161, 233, 257
HpaII CCGG 2 cut(s) 27, 71
HphI GGTGA 2 cut(s) 348, 444
Hpy166II GTNNAC 2 cut(s) 16, 294
Hpy188I TCNGA 1 cut(s) 170
Hpy8I GTNNAC 2 cut(s) 16, 294
Hpy99I CGWCG 1 cut(s) 58
HpyAV CCTTC 3 cut(s) 158, 434, 465
HpyCH4III ACNGT 4 cut(s) 13, 374, 394, 403
HpyCH4V TGCA 3 cut(s) 79, 214, 381
HpyF10VI GCNNNNNNNGC 5 cut(s) 58, 67, 76, 90, 387
HpyF3I CTNAG 2 cut(s) 41, 297
Hsp92II CATG 3 cut(s) 161, 242, 470
HspAI GCGC 1 cut(s) 4
LmnI GCTCC 1 cut(s) 326
LpnPI CCDG 6 cut(s) 40, 84, 203, 207, 345, 372
Lsp1109I GCAGC 1 cut(s) 226
LweI GCATC 1 cut(s) 88
MaeI CTAG 1 cut(s) 344
MboII GAAGA 1 cut(s) 324
MhlI GDGCHC 1 cut(s) 356
MluCI AATT 2 cut(s) 116, 447
MlyI GAGTC 3 cut(s) 170, 227, 266
MmeI TCCRAC 1 cut(s) 285
MnlI CCTC 8 cut(s) 34, 41, 99, 137, 155, 209, 292, 420
MseI TTAA 1 cut(s) 369
MslI CAYNNNNRTG 1 cut(s) 345
MspI CCGG 2 cut(s) 27, 71
MspR9I CCNGG 1 cut(s) 360
MvaI CCWGG 1 cut(s) 360
MwoI GCNNNNNNNGC 5 cut(s) 58, 67, 76, 90, 387
NcoI CCATGG 1 cut(s) 466
NlaIII CATG 3 cut(s) 161, 242, 470
OliI CACNNNNGTG 1 cut(s) 345
PkrI GCNGC 3 cut(s) 60, 86, 216
PleI GAGTC 3 cut(s) 169, 227, 265
PpsI GAGTC 3 cut(s) 169, 227, 265
PpuMI RGGWCCY 1 cut(s) 407
PshAI GACNNNNGTC 1 cut(s) 412
Psp5II RGGWCCY 1 cut(s) 407
Psp6I CCWGG 1 cut(s) 358
PspGI CCWGG 1 cut(s) 358
PspPI GGNCC 1 cut(s) 407
PspPPI RGGWCCY 1 cut(s) 407
PstI CTGCAG 1 cut(s) 216
RsaI GTAC 1 cut(s) 295
RsaNI GTAC 1 cut(s) 294
RseI CAYNNNNRTG 1 cut(s) 345
SaqAI TTAA 1 cut(s) 369
SatI GCNGC 3 cut(s) 59, 85, 215
Sau96I GGNCC 1 cut(s) 407
SchI GAGTC 3 cut(s) 170, 227, 266
ScrFI CCNGG 1 cut(s) 360
SduI GDGCHC 1 cut(s) 356
SetI ASST 9 cut(s) 314, 331, 345, 349, 361, 412, 434, 444, 457
SfaNI GCATC 1 cut(s) 88
SfcI CTRYAG 2 cut(s) 212, 402
SinI GGWCC 1 cut(s) 407
SmiMI CAYNNNNRTG 1 cut(s) 345
Sse9I AATT 2 cut(s) 116, 447
SsiI CCGC 4 cut(s) 59, 85, 254, 324
SspMI CTAG 1 cut(s) 344
StyD4I CCNGG 1 cut(s) 358
StyI CCWWGG 2 cut(s) 343, 466
TaaI ACNGT 4 cut(s) 13, 374, 394, 403
TaqI TCGA 1 cut(s) 114
TasI AATT 2 cut(s) 116, 447
TatI WGTACW 1 cut(s) 293
TauI GCSGC 2 cut(s) 61, 87
Tru1I TTAA 1 cut(s) 369
Tru9I TTAA 1 cut(s) 369
TscAI CASTG 1 cut(s) 397
TseI GCWGC 1 cut(s) 214
TspDTI ATGAA 1 cut(s) 416
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 1 cut(s) 397
VpaK11BI GGWCC 1 cut(s) 407
XapI RAATTY 1 cut(s) 116
XmaJI CCTAGG 1 cut(s) 343
XmiI GTMKAC 1 cut(s) 15
XspI CTAG 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.