Rroxscaffold_7G00194570

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
N/A
Physical Location & Seq
Reverse (-)
36493471 .. 36501670
8200 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00194570.1

Sequence Viewer

Length: 276 bp
ATGGAGCGGGAGGCGGAAGGGAAGTGGAGAAAAACCAAAACCAAGAGGAGACTCAAGCCGTCGAGGGCGGTGACAGCGAGGGAGAAGAAGGTGAAGGCTATTTTAGAAATGGACCAAGGCTTTCGCACCTTTCTAGATGACGATGAACTCGAGAGAGGAGAAGATATTAACCGGGACTTGGGAATGCCATCCGAGACTCGCGAAGTTCGTCATTGTGTTCTCAAAATATTACGCTTCTTCCGGTGGTGCCTTAACGAGCCGGGTGATGATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

91

Amino Acids

10.88

Weight (kDa)

9.06

Isoelectric Point (pI)

46.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 246
AccBSI CCGCTC 1 cut(s) 7
AccII CGCG 1 cut(s) 201
AciI CCGC 3 cut(s) 7, 14, 68
AclWI GGATC 1 cut(s) 263
AfiI CCNNNNNNNGG 1 cut(s) 178
Alw26I GTCTC 2 cut(s) 43, 188
AlwI GGATC 1 cut(s) 263
Ama87I CYCGRG 1 cut(s) 149
AspS9I GGNCC 1 cut(s) 112
AsuC2I CCSGG 2 cut(s) 173, 261
AsuHPI GGTGA 3 cut(s) 82, 103, 275
AvaI CYCGRG 1 cut(s) 149
AvaII GGWCC 1 cut(s) 112
BanI GGYRCC 1 cut(s) 246
BccI CCATC 1 cut(s) 196
BceAI ACGGC 1 cut(s) 43
BcnI CCSGG 2 cut(s) 173, 261
BcoDI GTCTC 2 cut(s) 43, 188
BfaI CTAG 1 cut(s) 134
Bme1390I CCNGG 2 cut(s) 173, 261
Bme18I GGWCC 1 cut(s) 112
BmeT110I CYCGRG 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 112
BmiI GGNNCC 1 cut(s) 248
BmrFI CCNGG 2 cut(s) 173, 261
BpuEI CTTGAG 1 cut(s) 38
BpuMI CCSGG 2 cut(s) 173, 261
BsaJI CCNNGG 1 cut(s) 115
BsaWI WCCGGW 1 cut(s) 240
Bsc4I CCNNNNNNNGG 1 cut(s) 178
BseDI CCNNGG 1 cut(s) 115
BseGI GGATG 1 cut(s) 188
BseLI CCNNNNNNNGG 1 cut(s) 178
BseRI GAGGAG 2 cut(s) 61, 171
Bsh1236I CGCG 1 cut(s) 201
BshNI GGYRCC 1 cut(s) 246
BsiHKCI CYCGRG 1 cut(s) 149
BsiSI CCGG 3 cut(s) 172, 241, 260
BslFI GGGAC 1 cut(s) 188
BslI CCNNNNNNNGG 1 cut(s) 178
BsmAI GTCTC 2 cut(s) 43, 188
BsmFI GGGAC 1 cut(s) 188
BsmI GAATGC 1 cut(s) 189
BsoBI CYCGRG 1 cut(s) 149
Bsp143I GATC 1 cut(s) 268
Bsp68I TCGCGA 1 cut(s) 201
BspACI CCGC 3 cut(s) 7, 14, 68
BspFNI CGCG 1 cut(s) 201
BspLI GGNNCC 1 cut(s) 248
BspPI GGATC 1 cut(s) 263
BspT107I GGYRCC 1 cut(s) 246
BsrBI CCGCTC 1 cut(s) 7
BssECI CCNNGG 1 cut(s) 115
BssMI GATC 1 cut(s) 268
BssT1I CCWWGG 1 cut(s) 115
BstF5I GGATG 1 cut(s) 188
BstFNI CGCG 1 cut(s) 201
BstKTI GATC 1 cut(s) 271
BstMAI GTCTC 2 cut(s) 43, 188
BstMBI GATC 1 cut(s) 268
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstSCI CCNGG 2 cut(s) 171, 259
BstUI CGCG 1 cut(s) 201
BtsCI GGATG 1 cut(s) 188
BtuMI TCGCGA 1 cut(s) 201
Cfr13I GGNCC 1 cut(s) 112
CviJI RGCY 4 cut(s) 58, 98, 120, 259
CviKI_1 RGCY 4 cut(s) 58, 98, 120, 259
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
EciI GGCGGA 1 cut(s) 29
Eco130I CCWWGG 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 112
Eco88I CYCGRG 1 cut(s) 149
EcoT14I CCWWGG 1 cut(s) 115
ErhI CCWWGG 1 cut(s) 115
FaqI GGGAC 1 cut(s) 188
FokI GGATG 1 cut(s) 175
FspBI CTAG 1 cut(s) 134
HapII CCGG 3 cut(s) 172, 241, 260
HinfI GANTC 2 cut(s) 51, 196
HpaII CCGG 3 cut(s) 172, 241, 260
HphI GGTGA 3 cut(s) 82, 103, 275
Hpy188I TCNGA 1 cut(s) 193
Hpy188III TCNNGA 3 cut(s) 134, 151, 200
Hpy99I CGWCG 1 cut(s) 64
HpyAV CCTTC 3 cut(s) 11, 82, 88
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
Kzo9I GATC 1 cut(s) 268
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 2 cut(s) 185, 254
MaeI CTAG 1 cut(s) 134
MaeIII GTNAC 1 cut(s) 70
MalI GATC 1 cut(s) 270
MbiI CCGCTC 1 cut(s) 7
MboI GATC 1 cut(s) 268
MboII GAAGA 3 cut(s) 97, 173, 229
MlyI GAGTC 2 cut(s) 45, 190
MnlI CCTC 5 cut(s) 4, 39, 57, 72, 149
MseI TTAA 2 cut(s) 168, 252
MspI CCGG 3 cut(s) 172, 241, 260
MspR9I CCNGG 2 cut(s) 173, 261
Mva1269I GAATGC 1 cut(s) 189
MvnI CGCG 1 cut(s) 201
MwoI GCNNNNNNNGC 1 cut(s) 74
NciI CCSGG 2 cut(s) 173, 261
NdeII GATC 1 cut(s) 268
NlaIV GGNNCC 1 cut(s) 248
NmuCI GTSAC 1 cut(s) 70
NruI TCGCGA 1 cut(s) 201
PaeR7I CTCGAG 1 cut(s) 149
PcsI WCGNNNNNNNCGW 2 cut(s) 147, 205
PctI GAATGC 1 cut(s) 189
PleI GAGTC 2 cut(s) 45, 190
PpsI GAGTC 2 cut(s) 45, 190
PspN4I GGNNCC 1 cut(s) 248
PspPI GGNCC 1 cut(s) 112
RruI TCGCGA 1 cut(s) 201
SaqAI TTAA 2 cut(s) 168, 252
Sau3AI GATC 1 cut(s) 268
Sau96I GGNCC 1 cut(s) 112
SchI GAGTC 2 cut(s) 45, 190
ScrFI CCNGG 2 cut(s) 173, 261
SetI ASST 2 cut(s) 93, 131
Sfr274I CTCGAG 1 cut(s) 149
SinI GGWCC 1 cut(s) 112
SlaI CTCGAG 1 cut(s) 149
SmlI CTYRAG 2 cut(s) 53, 149
SmoI CTYRAG 2 cut(s) 53, 149
SsiI CCGC 3 cut(s) 7, 14, 68
SspI AATATT 1 cut(s) 228
SspMI CTAG 1 cut(s) 134
StyD4I CCNGG 2 cut(s) 171, 259
StyI CCWWGG 1 cut(s) 115
TaqI TCGA 2 cut(s) 62, 150
Tru1I TTAA 2 cut(s) 168, 252
Tru9I TTAA 2 cut(s) 168, 252
TseFI GTSAC 1 cut(s) 70
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 1 cut(s) 159
VpaK11BI GGWCC 1 cut(s) 112
XbaI TCTAGA 1 cut(s) 133
XhoI CTCGAG 1 cut(s) 149
XspI CTAG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.