Rroxscaffold_7G00195840

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
N/A
Physical Location & Seq
Forward (+)
38435002 .. 38443009
8008 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00195840.1

Sequence Viewer

Length: 522 bp
ATGGTTTACTTGTTTTTTACAAGATACATCCATTGGATGTACGAAACCAAAAGGATAGCTTTTATGAGCCAAAAGGATAGCTTTTATGAGGCATTTGCTGAGCATGAAAGTAGATTCAAAAATGACATGGAGAGGGTGACTAGATGGAAGACAGCTCTTACAAAAGTAGCAAATCTGTCTAGGCAACACTTGTCGATGAAGGAAAGTTTGATTGATTTAAGCCAAGAACATAAGTTGGAACGCCATACAAGCATGCAAGACTCTTCATTGATTTACCTAAGGAATTATAGGCCAGGCTTCTCAACGTGGACGTTTCAAAGCCCATATATGTGTATAAGTTGGCGTCATAGTCTTCTAGAATATTCTTGTACAATCTTGAGTCATCTTGAAGCCATAGCAGCTCCTAACCTTCCCAAGTATCCTAGTATCATCGGGACTCCTAATGCCAACAAGTTTCCTAGTCCAATTAGGACTCTTTATTTCCGAGATGTTCTAAAACATTCCCGAGCTTTCCTTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

173

Amino Acids

20.66

Weight (kDa)

9.57

Isoelectric Point (pI)

57.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcyI GRCGYC 1 cut(s) 343
AfaI GTAC 2 cut(s) 41, 370
AgsI TTSAA 3 cut(s) 118, 317, 389
AjnI CCWGG 1 cut(s) 292
AluBI AGCT 5 cut(s) 59, 81, 155, 401, 509
AluI AGCT 5 cut(s) 59, 81, 155, 401, 509
Ama87I CYCGRG 1 cut(s) 504
AoxI GGCC 1 cut(s) 290
ApeKI GCWGC 1 cut(s) 398
AsuHPI GGTGA 1 cut(s) 148
AvaI CYCGRG 1 cut(s) 504
AxyI CCTNAGG 1 cut(s) 278
BbsI GAAGAC 2 cut(s) 155, 344
BbvI GCAGC 1 cut(s) 410
BccI CCATC 1 cut(s) 138
BciT130I CCWGG 1 cut(s) 294
BciVI GTATCC 1 cut(s) 429
BfaI CTAG 5 cut(s) 141, 180, 356, 423, 459
BfuI GTATCC 1 cut(s) 429
BisI GCNGC 1 cut(s) 399
BlpI GCTNAGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 400
Bme1390I CCNGG 1 cut(s) 294
BmeT110I CYCGRG 1 cut(s) 504
BmrFI CCNGG 1 cut(s) 294
BpiI GAAGAC 2 cut(s) 155, 344
Bpu1102I GCTNAGC 1 cut(s) 99
BpuEI CTTGAG 1 cut(s) 397
BsaHI GRCGYC 1 cut(s) 343
Bse21I CCTNAGG 1 cut(s) 278
BseBI CCWGG 1 cut(s) 294
BseGI GGATG 2 cut(s) 27, 42
BseMII CTCAG 1 cut(s) 90
BseXI GCAGC 1 cut(s) 410
BshFI GGCC 1 cut(s) 292
BsiHKCI CYCGRG 1 cut(s) 504
BslFI GGGAC 1 cut(s) 448
BsmFI GGGAC 1 cut(s) 448
BsnI GGCC 1 cut(s) 292
BsoBI CYCGRG 1 cut(s) 504
Bsp1407I TGTACA 1 cut(s) 368
Bsp1720I GCTNAGC 1 cut(s) 99
BspANI GGCC 1 cut(s) 292
BspCNI CTCAG 1 cut(s) 91
BsrGI TGTACA 1 cut(s) 368
BssNI GRCGYC 1 cut(s) 343
Bst2UI CCWGG 1 cut(s) 294
Bst6I CTCTTC 1 cut(s) 268
BstACI GRCGYC 1 cut(s) 343
BstAUI TGTACA 1 cut(s) 368
BstC8I GCNNGC 1 cut(s) 254
BstDEI CTNAG 2 cut(s) 99, 278
BstF5I GGATG 2 cut(s) 27, 42
BstMWI GCNNNNNNNGC 2 cut(s) 249, 398
BstNI CCWGG 1 cut(s) 294
BstNSI RCATGY 1 cut(s) 256
BstSCI CCNGG 1 cut(s) 292
BstV1I GCAGC 1 cut(s) 410
BstV2I GAAGAC 2 cut(s) 155, 344
Bsu36I CCTNAGG 1 cut(s) 278
BsuI GTATCC 1 cut(s) 429
BsuRI GGCC 1 cut(s) 292
BtsCI GGATG 2 cut(s) 27, 42
Cac8I GCNNGC 1 cut(s) 254
CseI GACGC 1 cut(s) 332
Csp6I GTAC 2 cut(s) 40, 369
CviAII CATG 3 cut(s) 104, 127, 253
CviQI GTAC 2 cut(s) 40, 369
DdeI CTNAG 2 cut(s) 99, 278
Eam1104I CTCTTC 1 cut(s) 268
EarI CTCTTC 1 cut(s) 268
Eco81I CCTNAGG 1 cut(s) 278
Eco88I CYCGRG 1 cut(s) 504
EcoRII CCWGG 1 cut(s) 292
FaeI CATG 3 cut(s) 107, 130, 256
FalI AAGNNNNNCTT 4 cut(s) 43, 75, 65, 97
FaqI GGGAC 1 cut(s) 448
FatI CATG 3 cut(s) 103, 126, 252
Fnu4HI GCNGC 1 cut(s) 399
FokI GGATG 2 cut(s) 14, 49
Fsp4HI GCNGC 1 cut(s) 399
FspBI CTAG 5 cut(s) 141, 180, 356, 423, 459
GluI GCNGC 1 cut(s) 399
HaeIII GGCC 1 cut(s) 292
HgaI GACGC 1 cut(s) 332
Hin1I GRCGYC 1 cut(s) 343
Hin1II CATG 3 cut(s) 107, 130, 256
HinfI GANTC 5 cut(s) 114, 260, 379, 436, 472
HphI GGTGA 1 cut(s) 148
Hpy166II GTNNAC 2 cut(s) 7, 309
Hpy188I TCNGA 1 cut(s) 485
Hpy188III TCNNGA 5 cut(s) 356, 376, 386, 433, 504
Hpy8I GTNNAC 2 cut(s) 7, 309
HpyAV CCTTC 2 cut(s) 193, 419
HpyCH4IV ACGT 2 cut(s) 305, 311
HpyCH4V TGCA 1 cut(s) 256
HpyF10VI GCNNNNNNNGC 2 cut(s) 249, 398
HpyF3I CTNAG 2 cut(s) 99, 278
HpySE526I ACGT 2 cut(s) 305, 311
Hsp92I GRCGYC 1 cut(s) 343
Hsp92II CATG 3 cut(s) 107, 130, 256
LmnI GCTCC 1 cut(s) 406
LpnPI CCDG 2 cut(s) 279, 306
Lsp1109I GCAGC 1 cut(s) 410
MaeI CTAG 5 cut(s) 141, 180, 356, 423, 459
MaeII ACGT 2 cut(s) 305, 311
MaeIII GTNAC 1 cut(s) 136
MboII GAAGA 3 cut(s) 160, 255, 344
MluCI AATT 2 cut(s) 283, 465
MlyI GAGTC 4 cut(s) 254, 388, 430, 466
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 2 cut(s) 82, 126
MseI TTAA 1 cut(s) 218
MslI CAYNNNNRTG 1 cut(s) 328
MspR9I CCNGG 1 cut(s) 294
MvaI CCWGG 1 cut(s) 294
MwoI GCNNNNNNNGC 2 cut(s) 249, 398
NlaIII CATG 3 cut(s) 107, 130, 256
NmuCI GTSAC 1 cut(s) 136
NspI RCATGY 1 cut(s) 256
PaeI GCATGC 1 cut(s) 256
PfeI GAWTC 1 cut(s) 114
PkrI GCNGC 1 cut(s) 400
PleI GAGTC 4 cut(s) 254, 387, 430, 466
PpsI GAGTC 4 cut(s) 254, 387, 430, 466
Psp6I CCWGG 1 cut(s) 292
PspGI CCWGG 1 cut(s) 292
RsaI GTAC 2 cut(s) 41, 370
RsaNI GTAC 2 cut(s) 40, 369
RseI CAYNNNNRTG 1 cut(s) 328
SaqAI TTAA 1 cut(s) 218
SatI GCNGC 1 cut(s) 399
SchI GAGTC 4 cut(s) 254, 388, 430, 466
ScrFI CCNGG 1 cut(s) 294
SetI ASST 9 cut(s) 61, 83, 157, 279, 308, 314, 403, 411, 511
SmiMI CAYNNNNRTG 1 cut(s) 328
SmlI CTYRAG 1 cut(s) 376
SmoI CTYRAG 1 cut(s) 376
SphI GCATGC 1 cut(s) 256
Sse9I AATT 2 cut(s) 283, 465
SspI AATATT 1 cut(s) 362
SspMI CTAG 5 cut(s) 141, 180, 356, 423, 459
StyD4I CCNGG 1 cut(s) 292
TaiI ACGT 2 cut(s) 308, 314
TaqI TCGA 1 cut(s) 194
TasI AATT 2 cut(s) 283, 465
TatI WGTACW 1 cut(s) 368
TfiI GAWTC 1 cut(s) 114
Tru1I TTAA 1 cut(s) 218
Tru9I TTAA 1 cut(s) 218
TseFI GTSAC 1 cut(s) 136
TseI GCWGC 1 cut(s) 398
Tsp45I GTSAC 1 cut(s) 136
TspDTI ATGAA 3 cut(s) 120, 212, 255
XbaI TCTAGA 1 cut(s) 355
XceI RCATGY 1 cut(s) 256
XspI CTAG 5 cut(s) 141, 180, 356, 423, 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.