Rroxscaffold_7G00196490

Cysteine-rich receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
N/A
Physical Location & Seq
Forward (+)
39500325 .. 39509448
9124 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_7G00196490.1

Sequence Viewer

Length: 399 bp
ATGCGTTATAAAACCATAGTAGGCATTGCTCGAGGGCTCCTTTATCTCCACGAAGATTCTCGCCCGAGAATCATACATCATGATCTCAAAACTAGTAACATCTTGATAGATGCAGAAATGAATCCTAAAATATCAGATTTTGGAATGGCAAATGGATATATAGCTCCAGAATATGCAATGCATGGACAATTTTCTGTTAAGTCCGATGTCTATAGCTTTGGTGTATTAGTCTTGGAGATAATAACTGGACAGAAAAATAATTGCTTCCGTCAAGGAGAGAATGTGGAAGATCTTCTAAGTTATCTACGATTTTTAGGGGTTTCGGGGTTAAGGCTTCGTGCGATAACGTGTTTTAGAGAAACGTTAATTGAGAGAGAGTTACTTGTGTACTTTCGGTGA

Protein Analysis

132

Amino Acids

15.2

Weight (kDa)

7.81

Isoelectric Point (pI)

31.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 4 - 51 1.3e-08 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 6 - 86 6.8e-16 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 53 - 86 6.9e-08 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 9
AclI AACGTT 1 cut(s) 362
AfaI GTAC 1 cut(s) 389
AflIII ACRYGT 1 cut(s) 347
AhlI ACTAGT 1 cut(s) 92
AluBI AGCT 2 cut(s) 164, 216
AluI AGCT 2 cut(s) 164, 216
Ama87I CYCGRG 2 cut(s) 30, 64
Asp700I GAANNNNTTC 1 cut(s) 291
AvaI CYCGRG 2 cut(s) 30, 64
BanII GRGCYC 1 cut(s) 39
BcuI ACTAGT 1 cut(s) 92
BfaI CTAG 1 cut(s) 93
BfmI CTRYAG 1 cut(s) 211
BglII AGATCT 1 cut(s) 289
BmeT110I CYCGRG 2 cut(s) 30, 64
BmiI GGNNCC 1 cut(s) 38
BmsI GCATC 1 cut(s) 100
BpmI CTGGAG 1 cut(s) 150
BsaXI ACNNNNNCTCC 2 cut(s) 267, 297
Bse1I ACTGG 1 cut(s) 250
Bse3DI GCAATG 2 cut(s) 24, 183
BseMI GCAATG 2 cut(s) 24, 183
BseNI ACTGG 1 cut(s) 250
BsiHKCI CYCGRG 2 cut(s) 30, 64
BsoBI CYCGRG 2 cut(s) 30, 64
Bsp1286I GDGCHC 1 cut(s) 39
Bsp143I GATC 2 cut(s) 82, 289
BspHI TCATGA 1 cut(s) 79
BspLI GGNNCC 1 cut(s) 38
BsrDI GCAATG 2 cut(s) 24, 183
BsrI ACTGG 1 cut(s) 250
BssMI GATC 2 cut(s) 82, 289
BstDEI CTNAG 1 cut(s) 296
BstKTI GATC 2 cut(s) 85, 292
BstMBI GATC 2 cut(s) 82, 289
BstSFI CTRYAG 1 cut(s) 211
BstX2I RGATCY 1 cut(s) 289
BstYI RGATCY 1 cut(s) 289
CciI TCATGA 1 cut(s) 79
Csp6I GTAC 1 cut(s) 388
CviAII CATG 2 cut(s) 80, 182
CviJI RGCY 4 cut(s) 37, 164, 216, 334
CviKI_1 RGCY 4 cut(s) 37, 164, 216, 334
CviQI GTAC 1 cut(s) 388
DdeI CTNAG 1 cut(s) 296
DpnI GATC 2 cut(s) 84, 291
DpnII GATC 2 cut(s) 82, 289
Eco24I GRGCYC 1 cut(s) 39
Eco88I CYCGRG 2 cut(s) 30, 64
EcoT22I ATGCAT 1 cut(s) 183
EcoT38I GRGCYC 1 cut(s) 39
FaeI CATG 2 cut(s) 83, 185
FaiI YATR 9 cut(s) 9, 17, 74, 81, 159, 161, 174, 183, 213
FatI CATG 2 cut(s) 79, 181
FriOI GRGCYC 1 cut(s) 39
FspBI CTAG 1 cut(s) 93
GsuI CTGGAG 1 cut(s) 150
Hin1II CATG 2 cut(s) 83, 185
HinfI GANTC 3 cut(s) 56, 69, 121
Hpy166II GTNNAC 1 cut(s) 388
Hpy188I TCNGA 2 cut(s) 136, 205
Hpy188III TCNNGA 3 cut(s) 80, 103, 167
Hpy8I GTNNAC 1 cut(s) 388
HpyCH4IV ACGT 2 cut(s) 347, 362
HpyCH4V TGCA 3 cut(s) 113, 176, 181
HpyF3I CTNAG 1 cut(s) 296
HpySE526I ACGT 2 cut(s) 347, 362
Hsp92II CATG 2 cut(s) 83, 185
Kzo9I GATC 2 cut(s) 82, 289
LmnI GCTCC 2 cut(s) 42, 169
LpnPI CCDG 2 cut(s) 180, 231
LweI GCATC 1 cut(s) 100
MaeI CTAG 1 cut(s) 93
MaeII ACGT 2 cut(s) 347, 362
MaeIII GTNAC 2 cut(s) 95, 378
MalI GATC 2 cut(s) 84, 291
MboI GATC 2 cut(s) 82, 289
MboII GAAGA 3 cut(s) 65, 284, 299
MflI RGATCY 1 cut(s) 289
MhlI GDGCHC 1 cut(s) 39
MluCI AATT 3 cut(s) 188, 259, 366
MnlI CCTC 1 cut(s) 26
Mph1103I ATGCAT 1 cut(s) 183
MroXI GAANNNNTTC 1 cut(s) 291
MseI TTAA 3 cut(s) 198, 329, 365
NdeII GATC 2 cut(s) 82, 289
NlaIII CATG 2 cut(s) 83, 185
NlaIV GGNNCC 1 cut(s) 38
NsiI ATGCAT 1 cut(s) 183
PaeR7I CTCGAG 1 cut(s) 30
PagI TCATGA 1 cut(s) 79
PdmI GAANNNNTTC 1 cut(s) 291
PfeI GAWTC 3 cut(s) 56, 69, 121
PsiI TTATAA 1 cut(s) 9
Psp1406I AACGTT 1 cut(s) 362
PspN4I GGNNCC 1 cut(s) 38
PspXI VCTCGAGB 1 cut(s) 30
PsuI RGATCY 1 cut(s) 289
RsaI GTAC 1 cut(s) 389
RsaNI GTAC 1 cut(s) 388
SaqAI TTAA 3 cut(s) 198, 329, 365
Sau3AI GATC 2 cut(s) 82, 289
SduI GDGCHC 1 cut(s) 39
SetI ASST 4 cut(s) 166, 218, 350, 365
SfaNI GCATC 1 cut(s) 100
SfcI CTRYAG 1 cut(s) 211
Sfr274I CTCGAG 1 cut(s) 30
SlaI CTCGAG 1 cut(s) 30
SmlI CTYRAG 1 cut(s) 30
SmoI CTYRAG 1 cut(s) 30
SpeI ACTAGT 1 cut(s) 92
Sse9I AATT 3 cut(s) 188, 259, 366
SspMI CTAG 1 cut(s) 93
TaiI ACGT 2 cut(s) 350, 365
TaqI TCGA 1 cut(s) 31
TasI AATT 3 cut(s) 188, 259, 366
TatI WGTACW 1 cut(s) 387
TfiI GAWTC 3 cut(s) 56, 69, 121
Tru1I TTAA 3 cut(s) 198, 329, 365
Tru9I TTAA 3 cut(s) 198, 329, 365
TspDTI ATGAA 1 cut(s) 134
TspGWI ACGGA 1 cut(s) 257
XhoI CTCGAG 1 cut(s) 30
XmnI GAANNNNTTC 1 cut(s) 291
XspI CTAG 1 cut(s) 93
Zsp2I ATGCAT 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.