Rroxscaffold_7G00201980

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
N/A
Physical Location & Seq
Reverse (-)
49801451 .. 49806250
4800 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00201980.1

Sequence Viewer

Length: 234 bp
ATGTCTCCTCTGATTTTCTTGATGTACATAAGCATGGTAGGGATACGGGGACCTGGCGATATAGGGAAGATAACAATTGCTAAAGCTGTCTACAATTCAATTGTCTACCAGTTTGATATTAGCTGCCTTTTGGCAGATGTCAGAGAAGAGTCAAAGGCATATGGAGGTTTAGTCACCTACAAGGAAGGTTTAGTCACCTACAAGGAATTATTCTCTCTGACATTGTGGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

77

Amino Acids

8.62

Weight (kDa)

5.22

Isoelectric Point (pI)

30.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 90, 105
AfaI GTAC 1 cut(s) 26
AgsI TTSAA 1 cut(s) 99
AjnI CCWGG 1 cut(s) 52
AluBI AGCT 2 cut(s) 86, 123
AluI AGCT 2 cut(s) 86, 123
Alw26I GTCTC 1 cut(s) 9
ApeKI GCWGC 1 cut(s) 123
AspS9I GGNCC 1 cut(s) 50
AsuHPI GGTGA 2 cut(s) 166, 187
AvaII GGWCC 1 cut(s) 50
BbvI GCAGC 1 cut(s) 110
BciT130I CCWGG 1 cut(s) 54
BciVI GTATCC 1 cut(s) 36
BcoDI GTCTC 1 cut(s) 9
BfuI GTATCC 1 cut(s) 36
BisI GCNGC 1 cut(s) 124
BlsI GCNGC 1 cut(s) 125
Bme1390I CCNGG 1 cut(s) 54
Bme18I GGWCC 1 cut(s) 50
BmgT120I GGNCC 1 cut(s) 50
BmiI GGNNCC 1 cut(s) 51
BmrFI CCNGG 1 cut(s) 54
BsaXI ACNNNNNCTCC 2 cut(s) 156, 186
Bse1I ACTGG 1 cut(s) 109
BseBI CCWGG 1 cut(s) 54
BseNI ACTGG 1 cut(s) 109
BseXI GCAGC 1 cut(s) 110
BslFI GGGAC 1 cut(s) 63
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 63
Bsp1407I TGTACA 1 cut(s) 24
BspLI GGNNCC 1 cut(s) 51
BsrGI TGTACA 1 cut(s) 24
BsrI ACTGG 1 cut(s) 109
Bst2UI CCWGG 1 cut(s) 54
Bst6I CTCTTC 1 cut(s) 141
BstAUI TGTACA 1 cut(s) 24
BstMAI GTCTC 1 cut(s) 9
BstNI CCWGG 1 cut(s) 54
BstSCI CCNGG 1 cut(s) 52
BstV1I GCAGC 1 cut(s) 110
BsuI GTATCC 1 cut(s) 36
Cfr13I GGNCC 1 cut(s) 50
Csp6I GTAC 1 cut(s) 25
CviAII CATG 1 cut(s) 34
CviJI RGCY 2 cut(s) 86, 123
CviKI_1 RGCY 2 cut(s) 86, 123
CviQI GTAC 1 cut(s) 25
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 50
EcoO109I RGGNCCY 1 cut(s) 50
EcoRII CCWGG 1 cut(s) 52
FaeI CATG 1 cut(s) 37
FaiI YATR 5 cut(s) 29, 35, 62, 160, 162
FaqI GGGAC 1 cut(s) 63
FatI CATG 1 cut(s) 33
FauNDI CATATG 1 cut(s) 160
FblI GTMKAC 2 cut(s) 90, 105
Fnu4HI GCNGC 1 cut(s) 124
Fsp4HI GCNGC 1 cut(s) 124
GluI GCNGC 1 cut(s) 124
Hin1II CATG 1 cut(s) 37
HinfI GANTC 1 cut(s) 149
HphI GGTGA 2 cut(s) 166, 187
Hpy166II GTNNAC 2 cut(s) 91, 106
Hpy188I TCNGA 3 cut(s) 12, 143, 219
Hpy188III TCNNGA 1 cut(s) 19
Hpy8I GTNNAC 2 cut(s) 91, 106
HpyAV CCTTC 1 cut(s) 179
Hsp92II CATG 1 cut(s) 37
LpnPI CCDG 3 cut(s) 39, 66, 122
Lsp1109I GCAGC 1 cut(s) 110
MaeIII GTNAC 2 cut(s) 172, 193
MboII GAAGA 2 cut(s) 79, 158
MfeI CAATTG 2 cut(s) 75, 99
MluCI AATT 4 cut(s) 75, 94, 99, 206
MlyI GAGTC 1 cut(s) 158
MnlI CCTC 2 cut(s) 18, 158
MslI CAYNNNNRTG 1 cut(s) 32
MspR9I CCNGG 1 cut(s) 54
MunI CAATTG 2 cut(s) 75, 99
MvaI CCWGG 1 cut(s) 54
NdeI CATATG 1 cut(s) 160
NlaIII CATG 1 cut(s) 37
NlaIV GGNNCC 1 cut(s) 51
NmuCI GTSAC 2 cut(s) 172, 193
PkrI GCNGC 1 cut(s) 125
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
PpuMI RGGWCCY 1 cut(s) 50
Psp5II RGGWCCY 1 cut(s) 50
Psp6I CCWGG 1 cut(s) 52
PspGI CCWGG 1 cut(s) 52
PspN4I GGNNCC 1 cut(s) 51
PspPI GGNCC 1 cut(s) 50
PspPPI RGGWCCY 1 cut(s) 50
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
RseI CAYNNNNRTG 1 cut(s) 32
SatI GCNGC 1 cut(s) 124
Sau96I GGNCC 1 cut(s) 50
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 1 cut(s) 54
SetI ASST 7 cut(s) 55, 88, 125, 169, 179, 190, 200
SgeI CNNG 8 cut(s) 31, 46, 59, 65, 66, 121, 193, 214
SinI GGWCC 1 cut(s) 50
SmiMI CAYNNNNRTG 1 cut(s) 32
Sse9I AATT 4 cut(s) 75, 94, 99, 206
StyD4I CCNGG 1 cut(s) 52
TasI AATT 4 cut(s) 75, 94, 99, 206
TatI WGTACW 1 cut(s) 24
TseFI GTSAC 2 cut(s) 172, 193
TseI GCWGC 1 cut(s) 123
Tsp45I GTSAC 2 cut(s) 172, 193
VpaK11BI GGWCC 1 cut(s) 50
XmiI GTMKAC 2 cut(s) 90, 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.