Rroxscaffold_7G00202790

Casein Kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
N/A
Physical Location & Seq
Forward (+)
51147434 .. 51148133
700 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_7G00202790.1

Sequence Viewer

Length: 363 bp
ATGATACGAGCGGTGATGGTGATAAATACTGTGGCAAGCCTCGCCTTGCTAGGTTTTACGAATTTCAGCCTGTGGAGAAGTAACAGAGCTAATACGCACCGGAGTTTGTGGGATGTCCGGAATAACAGCTCGCACACAATGTCAATTGAAATGGTTGCATGTATTGCCATTGAGGCAATTTCCATATTGGAGAAGATGCACTCTAGAGGATATGTGCATGGAGATGTGAAACATGTCGGAGGCATTCTATCAATGGGAAGATATGAAGACCCAAATAGTGCGGCTTCCTCATTTTCGATGCTTCTTGGAGATGCTCCTCATCTTGATGGTCAGTACGTAATTTTTGGTAAGGGTCAGGTTTGA

Protein Analysis

120

Amino Acids

13.18

Weight (kDa)

8.0

Isoelectric Point (pI)

44.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 75 - 117 1.2e-09 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 11
AccIII TCCGGA 1 cut(s) 117
AciI CCGC 2 cut(s) 11, 281
AcsI RAATTY 1 cut(s) 61
AfaI GTAC 1 cut(s) 335
AflIII ACRYGT 1 cut(s) 232
AgsI TTSAA 1 cut(s) 149
AluBI AGCT 2 cut(s) 89, 129
AluI AGCT 2 cut(s) 89, 129
Aor13HI TCCGGA 1 cut(s) 117
ApoI RAATTY 1 cut(s) 61
AsuHPI GGTGA 2 cut(s) 25, 31
BbsI GAAGAC 1 cut(s) 273
BccI CCATC 2 cut(s) 10, 320
BfaI CTAG 2 cut(s) 50, 204
BglI GCCNNNNNGGC 1 cut(s) 173
BisI GCNGC 1 cut(s) 282
BlsI GCNGC 1 cut(s) 283
BmsI GCATC 3 cut(s) 186, 288, 301
BpiI GAAGAC 1 cut(s) 273
BsaAI YACGTR 1 cut(s) 337
BsaWI WCCGGW 2 cut(s) 99, 117
BseAI TCCGGA 1 cut(s) 117
BseGI GGATG 1 cut(s) 118
BseRI GAGGAG 1 cut(s) 306
BsiSI CCGG 2 cut(s) 100, 118
BsmI GAATGC 1 cut(s) 243
Bsp13I TCCGGA 1 cut(s) 117
BspACI CCGC 2 cut(s) 11, 281
BspEI TCCGGA 1 cut(s) 117
BsrBI CCGCTC 1 cut(s) 11
Bst4CI ACNGT 1 cut(s) 31
BstAPI GCANNNNNTGC 1 cut(s) 164
BstBAI YACGTR 1 cut(s) 337
BstC8I GCNNGC 2 cut(s) 37, 131
BstF5I GGATG 1 cut(s) 118
BstMWI GCNNNNNNNGC 3 cut(s) 41, 164, 173
BstNSI RCATGY 2 cut(s) 162, 236
BstSNI TACGTA 1 cut(s) 337
BstV2I GAAGAC 1 cut(s) 273
BtsCI GGATG 1 cut(s) 118
Cac8I GCNNGC 2 cut(s) 37, 131
Csp6I GTAC 1 cut(s) 334
CviAII CATG 3 cut(s) 159, 218, 233
CviJI RGCY 5 cut(s) 39, 69, 89, 129, 284
CviKI_1 RGCY 5 cut(s) 39, 69, 89, 129, 284
CviQI GTAC 1 cut(s) 334
Eco105I TACGTA 1 cut(s) 337
FaeI CATG 3 cut(s) 162, 221, 236
FaiI YATR 6 cut(s) 160, 185, 213, 219, 234, 264
FatI CATG 3 cut(s) 158, 217, 232
Fnu4HI GCNGC 1 cut(s) 282
FokI GGATG 1 cut(s) 125
Fsp4HI GCNGC 1 cut(s) 282
FspBI CTAG 2 cut(s) 50, 204
GluI GCNGC 1 cut(s) 282
HapII CCGG 2 cut(s) 100, 118
Hin1II CATG 3 cut(s) 162, 221, 236
HpaII CCGG 2 cut(s) 100, 118
HphI GGTGA 2 cut(s) 25, 31
Hpy188I TCNGA 1 cut(s) 239
Hpy188III TCNNGA 3 cut(s) 118, 204, 323
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4IV ACGT 1 cut(s) 336
HpyCH4V TGCA 3 cut(s) 158, 199, 217
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 164, 173
HpySE526I ACGT 1 cut(s) 336
Hsp92II CATG 3 cut(s) 162, 221, 236
Kpn2I TCCGGA 1 cut(s) 117
LmnI GCTCC 1 cut(s) 319
LpnPI CCDG 4 cut(s) 83, 113, 131, 341
LweI GCATC 3 cut(s) 186, 288, 301
MaeI CTAG 2 cut(s) 50, 204
MaeII ACGT 1 cut(s) 336
MaeIII GTNAC 1 cut(s) 80
MbiI CCGCTC 1 cut(s) 11
MboII GAAGA 3 cut(s) 205, 270, 278
MfeI CAATTG 1 cut(s) 144
MluCI AATT 4 cut(s) 61, 144, 177, 339
MmeI TCCRAC 1 cut(s) 217
MnlI CCTC 6 cut(s) 50, 166, 200, 233, 298, 327
MroI TCCGGA 1 cut(s) 117
MslI CAYNNNNRTG 2 cut(s) 222, 324
MspI CCGG 2 cut(s) 100, 118
MunI CAATTG 1 cut(s) 144
Mva1269I GAATGC 1 cut(s) 243
MwoI GCNNNNNNNGC 3 cut(s) 41, 164, 173
NlaIII CATG 3 cut(s) 162, 221, 236
NspI RCATGY 2 cut(s) 162, 236
PciI ACATGT 1 cut(s) 232
PctI GAATGC 1 cut(s) 243
PkrI GCNGC 1 cut(s) 283
Ppu21I YACGTR 1 cut(s) 337
PscI ACATGT 1 cut(s) 232
RsaI GTAC 1 cut(s) 335
RsaNI GTAC 1 cut(s) 334
RseI CAYNNNNRTG 2 cut(s) 222, 324
SatI GCNGC 1 cut(s) 282
SetI ASST 5 cut(s) 55, 91, 131, 339, 360
SfaNI GCATC 3 cut(s) 186, 288, 301
SmiMI CAYNNNNRTG 2 cut(s) 222, 324
SnaBI TACGTA 1 cut(s) 337
Sse9I AATT 4 cut(s) 61, 144, 177, 339
SsiI CCGC 2 cut(s) 11, 281
SspMI CTAG 2 cut(s) 50, 204
TaaI ACNGT 1 cut(s) 31
TaiI ACGT 1 cut(s) 339
TaqI TCGA 1 cut(s) 296
TasI AATT 4 cut(s) 61, 144, 177, 339
TauI GCSGC 1 cut(s) 284
TspDTI ATGAA 1 cut(s) 279
XapI RAATTY 1 cut(s) 61
XbaI TCTAGA 1 cut(s) 203
XceI RCATGY 2 cut(s) 162, 236
XspI CTAG 2 cut(s) 50, 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.