Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

56813915 .. 56815598

Gene Structure 1684 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00206950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGAGAGTACGGGTTGAATATGATGGTACCAAGAAGCAAATTGAAGTTACTATGGCTCCAATTGCTGTTGCAACTAAACCCCCAACTCCACTTTTGTCTTCGAAATATGACCTTTCCCCAATTCTCAAGAAAACCATGTATGTTGGTTTTTCCTCTTCAACCGGTTCGTTCCGCTCATCCCATTGTGTAGTGGGTTGGAGCTTTAAGATGAATGGCCAAGCTCAAGACCTTATAGCTTCCAAACTTCCCAAGTTGCCTAGCATTGCAGGCAAAAAGAGTAGGAAGAGGAAGTTTGCAGAAGTGCTTGAAGATTGGGAGCTAGAGTATGGTCCTCGAGGAGTAACATCCTTGAGGCAAGAGATCGAGTTTTGGTACGGATTTTGTGGCCGAGGAAGTGGAGTTGGTGTTGAAGCTTGGGCTTTTGTGCTCTCATTCGGAGCCAGCGGCAAGGCCAAGCATGCGACAAGTTGTTCGGTACTTTGCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009555 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0016020 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0044464 GO:0046677 GO:0048229 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

162

Amino Acids

17.82

Weight (kDa)

9.7

Isoelectric Point (pI)

40.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	1 - 83	2.5e-23	Legume lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	333
Acc65I	GGTACC	1 cut(s)	26
AccB1I	GGYRCC	1 cut(s)	26
AccBSI	CCGCTC	1 cut(s)	174
AciI	CCGC	2 cut(s)	172, 444
AcoI	YGGCCR	2 cut(s)	214, 385
AfaI	GTAC	4 cut(s)	9, 28, 374, 477
AgeI	ACCGGT	1 cut(s)	161
AgsI	TTSAA	5 cut(s)	17, 44, 159, 308, 410
AluBI	AGCT	5 cut(s)	201, 221, 236, 319, 413
AluI	AGCT	5 cut(s)	201, 221, 236, 319, 413
Alw21I	GWGCWC	1 cut(s)	429
Ama87I	CYCGRG	1 cut(s)	333
AoxI	GGCC	3 cut(s)	214, 385, 450
ArsI	GACNNNNNNTTYG	2 cut(s)	454, 486
AsiGI	ACCGGT	1 cut(s)	161
Asp718I	GGTACC	1 cut(s)	26
AspS9I	GGNCC	1 cut(s)	329
AsuII	TTCGAA	1 cut(s)	101
AvaI	CYCGRG	1 cut(s)	333
AvaII	GGWCC	1 cut(s)	329
BalI	TGGCCA	1 cut(s)	216
BanI	GGYRCC	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	429
BccI	CCATC	1 cut(s)	17
BfaI	CTAG	2 cut(s)	258, 320
BisI	GCNGC	1 cut(s)	445
BlsI	GCNGC	1 cut(s)	446
Bme18I	GGWCC	1 cut(s)	329
BmeT110I	CYCGRG	1 cut(s)	333
BmgT120I	GGNCC	1 cut(s)	329
BmiI	GGNNCC	3 cut(s)	28, 57, 439
BpiI	GAAGAC	1 cut(s)	90
Bpu14I	TTCGAA	1 cut(s)	101
BpuEI	CTTGAG	3 cut(s)	110, 207, 370
BsaJI	CCNNGG	1 cut(s)	388
BsaWI	WCCGGW	1 cut(s)	161
BsaXI	ACNNNNNCTCC	6 cut(s)	40, 70, 308, 338, 390, 420
Bse118I	RCCGGY	2 cut(s)	161, 483
Bse3DI	GCAATG	1 cut(s)	261
BseDI	CCNNGG	1 cut(s)	388
BseGI	GGATG	2 cut(s)	176, 344
BseMI	GCAATG	1 cut(s)	261
BseRI	GAGGAG	1 cut(s)	351
BshFI	GGCC	3 cut(s)	216, 387, 452
BshNI	GGYRCC	1 cut(s)	26
BshTI	ACCGGT	1 cut(s)	161
BsiHKAI	GWGCWC	1 cut(s)	429
BsiHKCI	CYCGRG	1 cut(s)	333
BsiSI	CCGG	2 cut(s)	162, 484
BsnI	GGCC	3 cut(s)	216, 387, 452
BsoBI	CYCGRG	1 cut(s)	333
Bsp119I	TTCGAA	1 cut(s)	101
Bsp1286I	GDGCHC	1 cut(s)	429
Bsp143I	GATC	1 cut(s)	360
BspACI	CCGC	2 cut(s)	172, 444
BspANI	GGCC	3 cut(s)	216, 387, 452
BspLI	GGNNCC	3 cut(s)	28, 57, 439
BspT104I	TTCGAA	1 cut(s)	101
BspT107I	GGYRCC	1 cut(s)	26
BsrBI	CCGCTC	1 cut(s)	174
BsrDI	GCAATG	1 cut(s)	261
BsrFI	RCCGGY	2 cut(s)	161, 483
BssAI	RCCGGY	2 cut(s)	161, 483
BssECI	CCNNGG	1 cut(s)	388
BssMI	GATC	1 cut(s)	360
Bst6I	CTCTTC	2 cut(s)	160, 278
BstBI	TTCGAA	1 cut(s)	101
BstC8I	GCNNGC	3 cut(s)	268, 442, 459
BstF5I	GGATG	2 cut(s)	176, 344
BstKTI	GATC	1 cut(s)	363
BstMBI	GATC	1 cut(s)	360
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 267, 458
BstNSI	RCATGY	1 cut(s)	461
BstV2I	GAAGAC	1 cut(s)	90
BsuRI	GGCC	3 cut(s)	216, 387, 452
BtsCI	GGATG	2 cut(s)	176, 344
Cac8I	GCNNGC	3 cut(s)	268, 442, 459
Cfr10I	RCCGGY	2 cut(s)	161, 483
Cfr13I	GGNCC	1 cut(s)	329
Csp6I	GTAC	4 cut(s)	8, 27, 373, 476
CspAI	ACCGGT	1 cut(s)	161
CviAII	CATG	2 cut(s)	136, 458
CviQI	GTAC	4 cut(s)	8, 27, 373, 476
DpnI	GATC	1 cut(s)	362
DpnII	GATC	1 cut(s)	360
EaeI	YGGCCR	2 cut(s)	214, 385
Eam1104I	CTCTTC	2 cut(s)	160, 278
EarI	CTCTTC	2 cut(s)	160, 278
Eco47I	GGWCC	1 cut(s)	329
Eco88I	CYCGRG	1 cut(s)	333
FaeI	CATG	2 cut(s)	139, 461
FaiI	YATR	8 cut(s)	21, 53, 108, 137, 141, 233, 327, 459
FatI	CATG	2 cut(s)	135, 457
Fnu4HI	GCNGC	1 cut(s)	445
FokI	GGATG	2 cut(s)	163, 331
Fsp4HI	GCNGC	1 cut(s)	445
FspBI	CTAG	2 cut(s)	258, 320
GluI	GCNGC	1 cut(s)	445
HaeIII	GGCC	3 cut(s)	216, 387, 452
HapII	CCGG	2 cut(s)	162, 484
Hin1II	CATG	2 cut(s)	139, 461
HindIII	AAGCTT	1 cut(s)	411
HpaII	CCGG	2 cut(s)	162, 484
Hpy188I	TCNGA	1 cut(s)	437
Hpy188III	TCNNGA	2 cut(s)	127, 224
HpyCH4V	TGCA	3 cut(s)	71, 266, 296
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 267, 458
Hsp92II	CATG	2 cut(s)	139, 461
KpnI	GGTACC	1 cut(s)	30
Kzo9I	GATC	1 cut(s)	360
LmnI	GCTCC	4 cut(s)	61, 198, 316, 437
LpnPI	CCDG	3 cut(s)	175, 252, 454
MaeI	CTAG	2 cut(s)	258, 320
MaeIII	GTNAC	2 cut(s)	46, 340
MalI	GATC	1 cut(s)	362
MbiI	CCGCTC	1 cut(s)	174
MboI	GATC	1 cut(s)	360
MboII	GAAGA	4 cut(s)	90, 147, 295, 320
MfeI	CAATTG	1 cut(s)	60
MhlI	GDGCHC	1 cut(s)	429
MlsI	TGGCCA	1 cut(s)	216
MluCI	AATT	3 cut(s)	39, 60, 120
MluNI	TGGCCA	1 cut(s)	216
MmeI	TCCRAC	1 cut(s)	176
MnlI	CCTC	6 cut(s)	163, 279, 329, 342, 345, 383
Mox20I	TGGCCA	1 cut(s)	216
MscI	TGGCCA	1 cut(s)	216
MseI	TTAA	1 cut(s)	204
Msp20I	TGGCCA	1 cut(s)	216
MspA1I	CMGCKG	1 cut(s)	444
MspI	CCGG	2 cut(s)	162, 484
MunI	CAATTG	1 cut(s)	60
MwoI	GCNNNNNNNGC	3 cut(s)	62, 267, 458
NdeII	GATC	1 cut(s)	360
NlaIII	CATG	2 cut(s)	139, 461
NlaIV	GGNNCC	3 cut(s)	28, 57, 439
NmeAIII	GCCGAG	1 cut(s)	413
NspI	RCATGY	1 cut(s)	461
NspV	TTCGAA	1 cut(s)	101
PaeI	GCATGC	1 cut(s)	461
PaeR7I	CTCGAG	1 cut(s)	333
PinAI	ACCGGT	1 cut(s)	161
PkrI	GCNGC	1 cut(s)	446
PspN4I	GGNNCC	3 cut(s)	28, 57, 439
PspPI	GGNCC	1 cut(s)	329
PspXI	VCTCGAGB	1 cut(s)	333
RsaI	GTAC	4 cut(s)	9, 28, 374, 477
RsaNI	GTAC	4 cut(s)	8, 27, 373, 476
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	1 cut(s)	445
Sau3AI	GATC	1 cut(s)	360
Sau96I	GGNCC	1 cut(s)	329
SduI	GDGCHC	1 cut(s)	429
SetI	ASST	7 cut(s)	114, 203, 223, 231, 238, 321, 415
Sfr274I	CTCGAG	1 cut(s)	333
SfuI	TTCGAA	1 cut(s)	101
SinI	GGWCC	1 cut(s)	329
SlaI	CTCGAG	1 cut(s)	333
SmlI	CTYRAG	4 cut(s)	125, 222, 333, 349
SmoI	CTYRAG	4 cut(s)	125, 222, 333, 349
SphI	GCATGC	1 cut(s)	461
Sse9I	AATT	3 cut(s)	39, 60, 120
SsiI	CCGC	2 cut(s)	172, 444
SspMI	CTAG	2 cut(s)	258, 320
TaqI	TCGA	3 cut(s)	101, 334, 363
TasI	AATT	3 cut(s)	39, 60, 120
TauI	GCSGC	1 cut(s)	447
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TspDTI	ATGAA	1 cut(s)	224
TspGWI	ACGGA	1 cut(s)	390
VpaK11BI	GGWCC	1 cut(s)	329
XceI	RCATGY	1 cut(s)	461
XhoI	CTCGAG	1 cut(s)	333
XspI	CTAG	2 cut(s)	258, 320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.