Rroxscaffold_7G00209890
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
N/A
Physical Location & Seq
Forward (+)
60148994 .. 60153465
4472 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_7G00209890.1

Sequence Viewer

Length: 183 bp
ATGGCATTTTATACAGTGTCCAGTTTTGGGAAACCAATGTTGGATTGGGGAACTAGGGAAATGGATTGCCTTTTGGAGCTGCAAGAGGACTGTTATACCTTCATGAGCAAGTGTGACCCGAAAGTTATCTACAGGGATGTGAAGGCAGCAAATGTACTTGATGACTATCTCGTGAAGCCGTAG

Protein Analysis

60

Amino Acids

6.99

Weight (kDa)

4.57

Isoelectric Point (pI)

31.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 156
AfiI CCNNNNNNNGG 1 cut(s) 27
AjuI GAANNNNNNNTTGG 2 cut(s) 23, 55
AluBI AGCT 1 cut(s) 79
AluI AGCT 1 cut(s) 79
ApeKI GCWGC 2 cut(s) 79, 146
BauI CACGAG 1 cut(s) 170
BbvI GCAGC 2 cut(s) 66, 158
BceAI ACGGC 1 cut(s) 163
BfaI CTAG 1 cut(s) 54
BfmI CTRYAG 1 cut(s) 130
BisI GCNGC 2 cut(s) 80, 147
BlsI GCNGC 2 cut(s) 81, 148
BsaBI GATNNNNATC 1 cut(s) 165
Bsc4I CCNNNNNNNGG 1 cut(s) 27
Bse1I ACTGG 1 cut(s) 21
Bse8I GATNNNNATC 1 cut(s) 165
BseGI GGATG 1 cut(s) 142
BseJI GATNNNNATC 1 cut(s) 165
BseLI CCNNNNNNNGG 1 cut(s) 27
BseNI ACTGG 1 cut(s) 21
BseXI GCAGC 2 cut(s) 66, 158
BslI CCNNNNNNNGG 1 cut(s) 27
BspHI TCATGA 1 cut(s) 102
BsrI ACTGG 1 cut(s) 21
BssSI CACGAG 1 cut(s) 170
Bst2BI CACGAG 1 cut(s) 170
Bst4CI ACNGT 2 cut(s) 16, 92
BstF5I GGATG 1 cut(s) 142
BstSFI CTRYAG 1 cut(s) 130
BstV1I GCAGC 2 cut(s) 66, 158
BtsCI GGATG 1 cut(s) 142
BtsIMutI CAGTG 1 cut(s) 21
CciI TCATGA 1 cut(s) 102
Csp6I GTAC 1 cut(s) 155
CviAII CATG 1 cut(s) 103
CviJI RGCY 2 cut(s) 79, 178
CviKI_1 RGCY 2 cut(s) 79, 178
CviQI GTAC 1 cut(s) 155
FaeI CATG 1 cut(s) 106
FaiI YATR 3 cut(s) 12, 96, 104
FatI CATG 1 cut(s) 102
Fnu4HI GCNGC 2 cut(s) 80, 147
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 2 cut(s) 80, 147
FspBI CTAG 1 cut(s) 54
GluI GCNGC 2 cut(s) 80, 147
Hin1II CATG 1 cut(s) 106
Hpy188III TCNNGA 2 cut(s) 103, 172
HpyAV CCTTC 2 cut(s) 109, 136
HpyCH4III ACNGT 2 cut(s) 16, 92
HpyCH4V TGCA 1 cut(s) 82
Hsp92II CATG 1 cut(s) 106
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 2 cut(s) 34, 118
Lsp1109I GCAGC 2 cut(s) 66, 158
MaeI CTAG 1 cut(s) 54
MaeIII GTNAC 1 cut(s) 113
MmeI TCCRAC 1 cut(s) 21
MnlI CCTC 1 cut(s) 79
NlaIII CATG 1 cut(s) 106
NmuCI GTSAC 1 cut(s) 113
PagI TCATGA 1 cut(s) 102
PkrI GCNGC 2 cut(s) 81, 148
RsaI GTAC 1 cut(s) 156
RsaNI GTAC 1 cut(s) 155
SatI GCNGC 2 cut(s) 80, 147
SetI ASST 2 cut(s) 81, 101
SfcI CTRYAG 1 cut(s) 130
SgeI CNNG 8 cut(s) 33, 66, 95, 115, 121, 130, 145, 170
SspMI CTAG 1 cut(s) 54
TaaI ACNGT 2 cut(s) 16, 92
TatI WGTACW 1 cut(s) 154
TscAI CASTG 1 cut(s) 21
TseFI GTSAC 1 cut(s) 113
TseI GCWGC 2 cut(s) 79, 146
Tsp45I GTSAC 1 cut(s) 113
TspDTI ATGAA 1 cut(s) 91
TspRI CASTG 1 cut(s) 21
XcmI CCANNNNNNNNNTGG 1 cut(s) 42
XspI CTAG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.