Rroxscaffold_7G00216920

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
N/A
Physical Location & Seq
Forward (+)
67555114 .. 67556573
1460 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00216920.1

Sequence Viewer

Length: 402 bp
ATGAAGAACACAGAAAACATAGCCGACTCTAATCTCGCTTTCAGTATACTTTTAAGCACTGGCAACGGTTTGGAACCCAGCCTAGCTGGGAGGCTCAGCCCCACGCCCGGTTCCATTAATTTTATTGAAAGTAGAATTTTGCATCGGGGGGACATAAAACCTGAACCCCGAGCTACAGAAAAACAGAATTGGTGGTCAGTTCAAGTATTTGTCTGGGGGAAGGGCTACGCAGAATGGACTTTGACCTGGATACCACCGATGGAACAATGTGAGGTTTATGCTTACGTGCCCAATGGTTCTCTGCAATCTCTGTTGCGCCAAAAGAGTTCCACCAATCTTAGATTCCAAAGCCGGATATCATATTGCAATAGGAACTACCAGAGGATTGGCTTACCTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

133

Amino Acids

15.13

Weight (kDa)

9.3

Isoelectric Point (pI)

46.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 46
AcsI RAATTY 1 cut(s) 135
AfiI CCNNNNNNNGG 1 cut(s) 107
AgsI TTSAA 2 cut(s) 128, 203
AjnI CCWGG 1 cut(s) 245
AjuI GAANNNNNNNTTGG 2 cut(s) 326, 358
AluBI AGCT 2 cut(s) 86, 173
AluI AGCT 2 cut(s) 86, 173
Ama87I CYCGRG 1 cut(s) 168
ApoI RAATTY 1 cut(s) 135
AseI ATTAAT 1 cut(s) 117
AspLEI GCGC 1 cut(s) 318
AsuC2I CCSGG 1 cut(s) 108
AvaI CYCGRG 1 cut(s) 168
BaeGI GKGCMC 1 cut(s) 291
BccI CCATC 1 cut(s) 253
BciT130I CCWGG 1 cut(s) 247
BciVI GTATCC 1 cut(s) 243
BcnI CCSGG 1 cut(s) 108
BfaI CTAG 1 cut(s) 83
BfmI CTRYAG 1 cut(s) 174
BfuI GTATCC 1 cut(s) 243
BlpI GCTNAGC 1 cut(s) 95
Bme1390I CCNGG 2 cut(s) 108, 247
BmeT110I CYCGRG 1 cut(s) 168
BmiI GGNNCC 2 cut(s) 75, 112
BmrFI CCNGG 2 cut(s) 108, 247
BmsI GCATC 1 cut(s) 151
Bpu1102I GCTNAGC 1 cut(s) 95
BpuMI CCSGG 1 cut(s) 108
BsaAI YACGTR 1 cut(s) 286
Bsc4I CCNNNNNNNGG 1 cut(s) 107
Bse1I ACTGG 1 cut(s) 64
BseBI CCWGG 1 cut(s) 247
BseLI CCNNNNNNNGG 1 cut(s) 107
BseMII CTCAG 1 cut(s) 109
BseNI ACTGG 1 cut(s) 64
BseSI GKGCMC 1 cut(s) 291
BseYI CCCAGC 2 cut(s) 77, 86
BsiHKCI CYCGRG 1 cut(s) 168
BsiSI CCGG 2 cut(s) 108, 352
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 107
BsmFI GGGAC 1 cut(s) 164
BsoBI CYCGRG 1 cut(s) 168
Bsp1286I GDGCHC 1 cut(s) 291
Bsp1720I GCTNAGC 1 cut(s) 95
BspCNI CTCAG 1 cut(s) 108
BspLI GGNNCC 2 cut(s) 75, 112
BsrI ACTGG 1 cut(s) 64
BssNAI GTATAC 1 cut(s) 47
Bst1107I GTATAC 1 cut(s) 47
Bst2UI CCWGG 1 cut(s) 247
Bst4CI ACNGT 1 cut(s) 68
BstBAI YACGTR 1 cut(s) 286
BstDEI CTNAG 2 cut(s) 95, 338
BstHHI GCGC 1 cut(s) 318
BstNI CCWGG 1 cut(s) 247
BstSCI CCNGG 2 cut(s) 106, 245
BstSFI CTRYAG 1 cut(s) 174
BstSLI GKGCMC 1 cut(s) 291
BstXI CCANNNNNNTGG 1 cut(s) 386
BstZ17I GTATAC 1 cut(s) 47
BsuI GTATCC 1 cut(s) 243
BtsIMutI CAGTG 1 cut(s) 57
CfoI GCGC 1 cut(s) 318
CviAII CATG 1 cut(s) 399
CviJI RGCY 9 cut(s) 23, 81, 86, 94, 99, 173, 225, 351, 390
CviKI_1 RGCY 9 cut(s) 23, 81, 86, 94, 99, 173, 225, 351, 390
DdeI CTNAG 2 cut(s) 95, 338
Eco32I GATATC 1 cut(s) 357
Eco88I CYCGRG 1 cut(s) 168
EcoRII CCWGG 1 cut(s) 245
EcoRV GATATC 1 cut(s) 357
FaeI CATG 1 cut(s) 402
FaiI YATR 6 cut(s) 20, 47, 155, 279, 361, 400
FaqI GGGAC 1 cut(s) 164
FatI CATG 1 cut(s) 398
FblI GTMKAC 1 cut(s) 46
FspBI CTAG 1 cut(s) 83
GlaI GCGC 1 cut(s) 317
GsaI CCCAGC 2 cut(s) 81, 90
HapII CCGG 2 cut(s) 108, 352
HhaI GCGC 1 cut(s) 318
Hin1II CATG 1 cut(s) 402
Hin6I GCGC 1 cut(s) 316
HinP1I GCGC 1 cut(s) 316
HinfI GANTC 2 cut(s) 26, 342
HpaII CCGG 2 cut(s) 108, 352
Hpy166II GTNNAC 1 cut(s) 47
Hpy8I GTNNAC 1 cut(s) 47
HpyAV CCTTC 1 cut(s) 214
HpyCH4III ACNGT 1 cut(s) 68
HpyCH4IV ACGT 1 cut(s) 285
HpyCH4V TGCA 3 cut(s) 142, 304, 366
HpyF3I CTNAG 2 cut(s) 95, 338
HpySE526I ACGT 1 cut(s) 285
Hsp92II CATG 1 cut(s) 402
HspAI GCGC 1 cut(s) 316
LweI GCATC 1 cut(s) 151
MaeI CTAG 1 cut(s) 83
MaeII ACGT 1 cut(s) 285
MboII GAAGA 1 cut(s) 16
MhlI GDGCHC 1 cut(s) 291
MluCI AATT 3 cut(s) 118, 135, 187
MlyI GAGTC 1 cut(s) 20
MnlI CCTC 3 cut(s) 84, 265, 375
MseI TTAA 2 cut(s) 53, 117
MspI CCGG 2 cut(s) 108, 352
MspR9I CCNGG 2 cut(s) 108, 247
MvaI CCWGG 1 cut(s) 247
NciI CCSGG 1 cut(s) 108
NlaIII CATG 1 cut(s) 402
NlaIV GGNNCC 2 cut(s) 75, 112
PfeI GAWTC 1 cut(s) 342
PleI GAGTC 1 cut(s) 20
PpsI GAGTC 1 cut(s) 20
Ppu21I YACGTR 1 cut(s) 286
PshBI ATTAAT 1 cut(s) 117
Psp6I CCWGG 1 cut(s) 245
PspFI CCCAGC 2 cut(s) 77, 86
PspGI CCWGG 1 cut(s) 245
PspN4I GGNNCC 2 cut(s) 75, 112
SaqAI TTAA 2 cut(s) 53, 117
SchI GAGTC 1 cut(s) 20
ScrFI CCNGG 2 cut(s) 108, 247
SduI GDGCHC 1 cut(s) 291
SetI ASST 7 cut(s) 88, 163, 175, 248, 276, 288, 397
SfaNI GCATC 1 cut(s) 151
SfcI CTRYAG 1 cut(s) 174
Sse9I AATT 3 cut(s) 118, 135, 187
SspMI CTAG 1 cut(s) 83
StyD4I CCNGG 2 cut(s) 106, 245
TaaI ACNGT 1 cut(s) 68
TaiI ACGT 1 cut(s) 288
TasI AATT 3 cut(s) 118, 135, 187
TfiI GAWTC 1 cut(s) 342
Tru1I TTAA 2 cut(s) 53, 117
Tru9I TTAA 2 cut(s) 53, 117
TscAI CASTG 1 cut(s) 64
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 64
VspI ATTAAT 1 cut(s) 117
XapI RAATTY 1 cut(s) 135
XmiI GTMKAC 1 cut(s) 46
XspI CTAG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.