Rorug01G0025000

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
N/A
Physical Location & Seq
Reverse (-)
4073919 .. 4075597
1679 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0025000.1

Sequence Viewer

Length: 1071 bp
ATGCTAATGAAGTTCCTTGTTGTTCTGACGTACACATCACCGGTACTCTGTTGGAATAACAAGCAGGCAAGAATAATGTACGACCAGGCAGAGGCTAATGGGGGTTATTACTCGACTGGTATAATAGCGACGAAACGTTGGTCAACAACTCGATTCCTTGATAATGTCGGATCTGTTGATGCCAGTACAGGGCTGAAAACAACAATTGTTGAAGATCTAGATAAGGTTAGGAGCGATGTTGAAGGTTTCAAAAGCGAATTTGAGGAGGTTAGATCTTGCATATCGCATATAGAACCGGACATGGTCGGCCTCCGTAATGCTATTATGACACTACAGACATGTATTTCTGAAATGAGGGACGAAGGGATTAGTAACATGGTTGTCGAAGTGATGAAGAAAGTCTTTGATGAGGAGGTTCCAATTGGGCATAGAGAGGGGGATGAATGTGATATGTTTGAAGATGACATAGTTATCCGTAAGGCGGGATCGTCAAGTGTTGTTGGGCCTCATCAGCCTAATAAGTTTGATATTGAGGACAAAAGCGCGTCATTGAAGCGAAAGTCAGAAAACAGTGCTGATGATGAAAACATGATGCTGAAATTAAGTGGAGTTGCTGATATATCCAATAGTGAATCGTTTTTGATTACTTACTTATTCAGCAAGATCATGACTGAGTCTGATAGTCTTGCAAGGGAGGTTGCAAGGTATGACGATCATAGTATCTCTCAATGGGACCTATGTTGCCTATCACCGATGCAGCCTATCACAAGCGAGATTGTTGACATATCAGTTTCATACCTGTTTGAAAAAACAAGCGACAGTTGGTTCATGCCCACTTATTTTTCAGAACGGGCTAAGGATTACGCAAGTGGTAGTGTTGTGGACGGTATGCTATCGTCAGTGCTGACTGTATGTCGGCTTCATAGATATACCGGTCGTTTGGGTTCTTGCAAGCAGATATTTTTCCCCCTCCATGACGGTGTTGTGGACAAATGGATCTTAGTGGTTTTGAACCTCGATGTGGGAGAATGTGAGATTTGGGACAGCTGCCCCGACATTGATGGCAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

356

Amino Acids

40.07

Weight (kDa)

4.66

Isoelectric Point (pI)

45.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 545
AciI CCGC 1 cut(s) 482
AclI AACGTT 1 cut(s) 136
AclWI GGATC 3 cut(s) 178, 493, 1004
AcsI RAATTY 1 cut(s) 257
AfaI GTAC 4 cut(s) 32, 45, 80, 187
AfiI CCNNNNNNNGG 4 cut(s) 91, 189, 481, 1021
AflIII ACRYGT 1 cut(s) 338
AgeI ACCGGT 2 cut(s) 40, 932
AgsI TTSAA 7 cut(s) 212, 242, 250, 458, 553, 806, 1012
AhdI GACNNNNNGTC 1 cut(s) 912
AjnI CCWGG 1 cut(s) 84
AluBI AGCT 1 cut(s) 1047
AluI AGCT 1 cut(s) 1047
AlwI GGATC 3 cut(s) 178, 493, 1004
AoxI GGCC 2 cut(s) 307, 503
ApeKI GCWGC 2 cut(s) 757, 1047
ApoI RAATTY 1 cut(s) 257
ArsI GACNNNNNNTTYG 2 cut(s) 125, 157
AsiGI ACCGGT 2 cut(s) 40, 932
AspLEI GCGC 1 cut(s) 545
AspS9I GGNCC 2 cut(s) 503, 733
AsuHPI GGTGA 2 cut(s) 30, 741
AvaII GGWCC 1 cut(s) 733
BarI GAAGNNNNNNTAC 2 cut(s) 903, 935
BbvI GCAGC 2 cut(s) 769, 1034
BccI CCATC 1 cut(s) 1055
BciT130I CCWGG 1 cut(s) 86
BfaI CTAG 1 cut(s) 218
BfmI CTRYAG 1 cut(s) 332
BglII AGATCT 2 cut(s) 214, 272
BisI GCNGC 2 cut(s) 758, 1048
BlsI GCNGC 2 cut(s) 759, 1049
Bme1390I CCNGG 1 cut(s) 86
Bme18I GGWCC 1 cut(s) 733
BmeRI GACNNNNNGTC 1 cut(s) 912
BmgT120I GGNCC 2 cut(s) 503, 733
BmiI GGNNCC 2 cut(s) 417, 734
BmrFI CCNGG 1 cut(s) 86
BmsI GCATC 3 cut(s) 169, 582, 744
Bpu10I CCTNAGC 1 cut(s) 855
BsaWI WCCGGW 3 cut(s) 40, 295, 932
Bsc4I CCNNNNNNNGG 4 cut(s) 91, 189, 481, 1021
Bse118I RCCGGY 2 cut(s) 40, 932
Bse1I ACTGG 2 cut(s) 121, 183
BseBI CCWGG 1 cut(s) 86
BseGI GGATG 1 cut(s) 445
BseLI CCNNNNNNNGG 4 cut(s) 91, 189, 481, 1021
BseMII CTCAG 1 cut(s) 663
BseNI ACTGG 2 cut(s) 121, 183
BseRI GAGGAG 2 cut(s) 278, 425
BseXI GCAGC 2 cut(s) 769, 1034
Bsh1236I CGCG 1 cut(s) 545
Bsh1285I CGRYCG 1 cut(s) 937
BshFI GGCC 2 cut(s) 309, 505
BshTI ACCGGT 2 cut(s) 40, 932
BsiEI CGRYCG 1 cut(s) 937
BsiSI CCGG 3 cut(s) 41, 296, 933
BslFI GGGAC 3 cut(s) 371, 746, 1055
BslI CCNNNNNNNGG 4 cut(s) 91, 189, 481, 1021
BsmFI GGGAC 3 cut(s) 371, 746, 1055
BsnI GGCC 2 cut(s) 309, 505
Bsp143I GATC 7 cut(s) 170, 214, 272, 485, 663, 712, 996
BspACI CCGC 1 cut(s) 482
BspANI GGCC 2 cut(s) 309, 505
BspCNI CTCAG 1 cut(s) 664
BspFNI CGCG 1 cut(s) 545
BspHI TCATGA 1 cut(s) 666
BspLI GGNNCC 2 cut(s) 417, 734
BspPI GGATC 3 cut(s) 178, 493, 1004
BsrFI RCCGGY 2 cut(s) 40, 932
BsrI ACTGG 2 cut(s) 121, 183
BssAI RCCGGY 2 cut(s) 40, 932
BssMI GATC 7 cut(s) 170, 214, 272, 485, 663, 712, 996
Bst2UI CCWGG 1 cut(s) 86
Bst4CI ACNGT 5 cut(s) 572, 821, 887, 910, 980
BstC8I GCNNGC 2 cut(s) 66, 953
BstDEI CTNAG 3 cut(s) 672, 855, 1000
BstF5I GGATG 1 cut(s) 445
BstFNI CGCG 1 cut(s) 545
BstHHI GCGC 1 cut(s) 545
BstKTI GATC 7 cut(s) 173, 217, 275, 488, 666, 715, 999
BstMBI GATC 7 cut(s) 170, 214, 272, 485, 663, 712, 996
BstMCI CGRYCG 1 cut(s) 937
BstMWI GCNNNNNNNGC 1 cut(s) 511
BstNI CCWGG 1 cut(s) 86
BstNSI RCATGY 1 cut(s) 342
BstSCI CCNGG 1 cut(s) 84
BstSFI CTRYAG 1 cut(s) 332
BstUI CGCG 1 cut(s) 545
BstV1I GCAGC 2 cut(s) 769, 1034
BstX2I RGATCY 4 cut(s) 170, 214, 272, 996
BstYI RGATCY 4 cut(s) 170, 214, 272, 996
BsuRI GGCC 2 cut(s) 309, 505
BtgZI GCGATG 1 cut(s) 249
BtsCI GGATG 1 cut(s) 445
BtsIMutI CAGTG 2 cut(s) 577, 906
Cac8I GCNNGC 2 cut(s) 66, 953
CciI TCATGA 1 cut(s) 666
CfoI GCGC 1 cut(s) 545
Cfr10I RCCGGY 2 cut(s) 40, 932
Cfr13I GGNCC 2 cut(s) 503, 733
CseI GACGC 1 cut(s) 534
Csp6I GTAC 4 cut(s) 31, 44, 79, 186
CspAI ACCGGT 2 cut(s) 40, 932
CviAII CATG 7 cut(s) 301, 339, 376, 589, 667, 829, 974
CviJI RGCY 9 cut(s) 95, 193, 309, 505, 514, 760, 854, 919, 1047
CviKI_1 RGCY 9 cut(s) 95, 193, 309, 505, 514, 760, 854, 919, 1047
CviQI GTAC 4 cut(s) 31, 44, 79, 186
DdeI CTNAG 3 cut(s) 672, 855, 1000
DpnI GATC 7 cut(s) 172, 216, 274, 487, 665, 714, 998
DpnII GATC 7 cut(s) 170, 214, 272, 485, 663, 712, 996
DriI GACNNNNNGTC 1 cut(s) 912
Eam1105I GACNNNNNGTC 1 cut(s) 912
Eco47I GGWCC 1 cut(s) 733
EcoO109I RGGNCCY 1 cut(s) 733
EcoRII CCWGG 1 cut(s) 84
FaeI CATG 7 cut(s) 304, 342, 379, 592, 670, 832, 977
FalI AAGNNNNNCTT 2 cut(s) 386, 418
FaqI GGGAC 3 cut(s) 371, 746, 1055
FatI CATG 7 cut(s) 300, 338, 375, 588, 666, 828, 973
FauI CCCGC 1 cut(s) 475
Fnu4HI GCNGC 2 cut(s) 758, 1048
FokI GGATG 1 cut(s) 452
Fsp4HI GCNGC 2 cut(s) 758, 1048
FspBI CTAG 1 cut(s) 218
GlaI GCGC 1 cut(s) 544
GluI GCNGC 2 cut(s) 758, 1048
HaeIII GGCC 2 cut(s) 309, 505
HapII CCGG 3 cut(s) 41, 296, 933
HgaI GACGC 1 cut(s) 534
HhaI GCGC 1 cut(s) 545
Hin1II CATG 7 cut(s) 304, 342, 379, 592, 670, 832, 977
Hin6I GCGC 1 cut(s) 543
HinP1I GCGC 1 cut(s) 543
HincII GTYRAC 2 cut(s) 144, 781
HindII GTYRAC 2 cut(s) 144, 781
HinfI GANTC 3 cut(s) 153, 632, 674
HpaII CCGG 3 cut(s) 41, 296, 933
HphI GGTGA 2 cut(s) 30, 741
Hpy166II GTNNAC 5 cut(s) 33, 144, 781, 883, 988
Hpy188I TCNGA 6 cut(s) 27, 170, 349, 565, 679, 847
Hpy188III TCNNGA 2 cut(s) 218, 667
Hpy8I GTNNAC 5 cut(s) 33, 144, 781, 883, 988
Hpy99I CGWCG 1 cut(s) 133
HpyAV CCTTC 2 cut(s) 236, 356
HpyCH4III ACNGT 5 cut(s) 572, 821, 887, 910, 980
HpyCH4IV ACGT 2 cut(s) 29, 136
HpyCH4V TGCA 5 cut(s) 279, 689, 701, 757, 951
HpyF10VI GCNNNNNNNGC 1 cut(s) 511
HpyF3I CTNAG 3 cut(s) 672, 855, 1000
HpySE526I ACGT 2 cut(s) 29, 136
Hsp92II CATG 7 cut(s) 304, 342, 379, 592, 670, 832, 977
HspAI GCGC 1 cut(s) 543
Kzo9I GATC 7 cut(s) 170, 214, 272, 485, 663, 712, 996
LmnI GCTCC 1 cut(s) 231
Lsp1109I GCAGC 2 cut(s) 769, 1034
LweI GCATC 3 cut(s) 169, 582, 744
MaeI CTAG 1 cut(s) 218
MaeII ACGT 2 cut(s) 29, 136
MaeIII GTNAC 1 cut(s) 371
MalI GATC 7 cut(s) 172, 216, 274, 487, 665, 714, 998
MboI GATC 7 cut(s) 170, 214, 272, 485, 663, 712, 996
MboII GAAGA 3 cut(s) 224, 406, 470
MfeI CAATTG 2 cut(s) 204, 420
MflI RGATCY 4 cut(s) 170, 214, 272, 996
MluCI AATT 4 cut(s) 204, 257, 420, 599
MlyI GAGTC 1 cut(s) 683
MmeI TCCRAC 2 cut(s) 32, 148
MseI TTAA 1 cut(s) 602
MslI CAYNNNNRTG 1 cut(s) 978
MspA1I CMGCKG 1 cut(s) 1047
MspI CCGG 3 cut(s) 41, 296, 933
MspR9I CCNGG 1 cut(s) 86
MunI CAATTG 2 cut(s) 204, 420
MvaI CCWGG 1 cut(s) 86
MvnI CGCG 1 cut(s) 545
MwoI GCNNNNNNNGC 1 cut(s) 511
NdeII GATC 7 cut(s) 170, 214, 272, 485, 663, 712, 996
NlaIII CATG 7 cut(s) 304, 342, 379, 592, 670, 832, 977
NlaIV GGNNCC 2 cut(s) 417, 734
NspI RCATGY 1 cut(s) 342
PagI TCATGA 1 cut(s) 666
PciI ACATGT 1 cut(s) 338
PfeI GAWTC 2 cut(s) 153, 632
PflFI GACNNNGTC 2 cut(s) 302, 673
PinAI ACCGGT 2 cut(s) 40, 932
PkrI GCNGC 2 cut(s) 759, 1049
PleI GAGTC 1 cut(s) 682
PpsI GAGTC 1 cut(s) 682
PpuMI RGGWCCY 1 cut(s) 733
PscI ACATGT 1 cut(s) 338
Psp1406I AACGTT 1 cut(s) 136
Psp5II RGGWCCY 1 cut(s) 733
Psp6I CCWGG 1 cut(s) 84
PspGI CCWGG 1 cut(s) 84
PspN4I GGNNCC 2 cut(s) 417, 734
PspPI GGNCC 2 cut(s) 503, 733
PspPPI RGGWCCY 1 cut(s) 733
PsuI RGATCY 4 cut(s) 170, 214, 272, 996
PsyI GACNNNGTC 2 cut(s) 302, 673
PvuII CAGCTG 1 cut(s) 1047
RsaI GTAC 4 cut(s) 32, 45, 80, 187
RsaNI GTAC 4 cut(s) 31, 44, 79, 186
RseI CAYNNNNRTG 1 cut(s) 978
SaqAI TTAA 1 cut(s) 602
SatI GCNGC 2 cut(s) 758, 1048
Sau3AI GATC 7 cut(s) 170, 214, 272, 485, 663, 712, 996
Sau96I GGNCC 2 cut(s) 503, 733
SchI GAGTC 1 cut(s) 683
ScrFI CCNGG 1 cut(s) 86
SfaNI GCATC 3 cut(s) 169, 582, 744
SfcI CTRYAG 1 cut(s) 332
SinI GGWCC 1 cut(s) 733
SmiMI CAYNNNNRTG 1 cut(s) 978
Sse9I AATT 4 cut(s) 204, 257, 420, 599
SsiI CCGC 1 cut(s) 482
SspMI CTAG 1 cut(s) 218
StyD4I CCNGG 1 cut(s) 84
TaaI ACNGT 5 cut(s) 572, 821, 887, 910, 980
TaiI ACGT 2 cut(s) 32, 139
TaqI TCGA 4 cut(s) 113, 151, 384, 1017
TasI AATT 4 cut(s) 204, 257, 420, 599
TatI WGTACW 1 cut(s) 185
TfiI GAWTC 2 cut(s) 153, 632
Tru1I TTAA 1 cut(s) 602
Tru9I TTAA 1 cut(s) 602
TscAI CASTG 2 cut(s) 577, 906
TseI GCWGC 2 cut(s) 757, 1047
TspDTI ATGAA 7 cut(s) 23, 407, 456, 597, 783, 817, 911
TspGWI ACGGA 2 cut(s) 302, 464
TspRI CASTG 2 cut(s) 577, 906
Tth111I GACNNNGTC 2 cut(s) 302, 673
VpaK11BI GGWCC 1 cut(s) 733
XapI RAATTY 1 cut(s) 257
XbaI TCTAGA 1 cut(s) 217
XceI RCATGY 1 cut(s) 342
XspI CTAG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.