Rorug01G0057600

Tyrosine kinase, catalytic domain

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
N/A
Physical Location & Seq
Forward (+)
9500755 .. 9502033
1279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0057600.1

Sequence Viewer

Length: 258 bp
ATGTCTAGCCTAGGAGGCTTGTCTGTTCGCACACCATCTGAGATTAGAAAGAAGAAGGTTGGTGGGCATCAAGAATTCTTGTTCACGATCCTCAACAAGAATGCAGGCCCGGGTCAAGAACTGGATCACCGGGCTGATCCGAACTCCTCCCAGAACTTCTCGTTCTCTCTAATCTCCTCCTCAGTTGGGTTTTCTTTCTTCTCCATAATCGGGTCGGAGATTCTTGTCCACTTCTGGAGTGTGTCCGTAATCGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

85

Amino Acids

9.21

Weight (kDa)

8.25

Isoelectric Point (pI)

45.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 82, 131, 132
AcsI RAATTY 1 cut(s) 74
AfiI CCNNNNNNNGG 3 cut(s) 186, 210, 252
AlwI GGATC 3 cut(s) 82, 131, 132
Ama87I CYCGRG 1 cut(s) 109
AoxI GGCC 1 cut(s) 106
ApoI RAATTY 1 cut(s) 74
AspA2I CCTAGG 1 cut(s) 10
AspS9I GGNCC 1 cut(s) 107
AsuC2I CCSGG 3 cut(s) 110, 111, 131
AsuHPI GGTGA 1 cut(s) 119
AvaI CYCGRG 1 cut(s) 109
AvrII CCTAGG 1 cut(s) 10
BccI CCATC 1 cut(s) 43
BcnI CCSGG 3 cut(s) 110, 111, 131
BfaI CTAG 2 cut(s) 6, 11
BglI GCCNNNNNGGC 1 cut(s) 15
BlnI CCTAGG 1 cut(s) 10
Bme1390I CCNGG 3 cut(s) 110, 111, 131
BmeT110I CYCGRG 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 107
BmrFI CCNGG 3 cut(s) 110, 111, 131
BmsI GCATC 1 cut(s) 76
BpmI CTGGAG 1 cut(s) 256
BpuMI CCSGG 3 cut(s) 110, 111, 131
BsaJI CCNNGG 2 cut(s) 10, 109
Bsc4I CCNNNNNNNGG 3 cut(s) 186, 210, 252
Bse1I ACTGG 1 cut(s) 126
BseDI CCNNGG 2 cut(s) 10, 109
BseLI CCNNNNNNNGG 3 cut(s) 186, 210, 252
BseMII CTCAG 2 cut(s) 30, 195
BseNI ACTGG 1 cut(s) 126
BseRI GAGGAG 3 cut(s) 136, 166, 169
BshFI GGCC 1 cut(s) 108
BsiHKCI CYCGRG 1 cut(s) 109
BsiSI CCGG 2 cut(s) 110, 130
BslI CCNNNNNNNGG 3 cut(s) 186, 210, 252
BsmI GAATGC 1 cut(s) 106
BsnI GGCC 1 cut(s) 108
BsoBI CYCGRG 1 cut(s) 109
Bsp143I GATC 3 cut(s) 87, 124, 136
BspANI GGCC 1 cut(s) 108
BspCNI CTCAG 2 cut(s) 31, 194
BspPI GGATC 3 cut(s) 82, 131, 132
BsrI ACTGG 1 cut(s) 126
BssECI CCNNGG 2 cut(s) 10, 109
BssMI GATC 3 cut(s) 87, 124, 136
BssT1I CCWWGG 1 cut(s) 10
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 2 cut(s) 39, 181
BstKTI GATC 3 cut(s) 90, 127, 139
BstMBI GATC 3 cut(s) 87, 124, 136
BstMWI GCNNNNNNNGC 1 cut(s) 15
BstSCI CCNGG 3 cut(s) 108, 109, 129
BsuRI GGCC 1 cut(s) 108
Cac8I GCNNGC 1 cut(s) 106
Cfr13I GGNCC 1 cut(s) 107
Cfr9I CCCGGG 1 cut(s) 109
CviJI RGCY 4 cut(s) 9, 18, 108, 134
CviKI_1 RGCY 4 cut(s) 9, 18, 108, 134
DdeI CTNAG 2 cut(s) 39, 181
DpnI GATC 3 cut(s) 89, 126, 138
DpnII GATC 3 cut(s) 87, 124, 136
Eco130I CCWWGG 1 cut(s) 10
Eco88I CYCGRG 1 cut(s) 109
EcoRI GAATTC 1 cut(s) 74
EcoT14I CCWWGG 1 cut(s) 10
ErhI CCWWGG 1 cut(s) 10
FaiI YATR 1 cut(s) 206
FspBI CTAG 2 cut(s) 6, 11
GsuI CTGGAG 1 cut(s) 256
HaeIII GGCC 1 cut(s) 108
HapII CCGG 2 cut(s) 110, 130
HinfI GANTC 1 cut(s) 220
HpaII CCGG 2 cut(s) 110, 130
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 2 cut(s) 84, 229
Hpy188I TCNGA 3 cut(s) 40, 141, 217
Hpy188III TCNNGA 4 cut(s) 71, 85, 116, 235
Hpy8I GTNNAC 2 cut(s) 84, 229
HpyAV CCTTC 1 cut(s) 49
HpyCH4V TGCA 1 cut(s) 104
HpyF10VI GCNNNNNNNGC 1 cut(s) 15
HpyF3I CTNAG 2 cut(s) 39, 181
Kzo9I GATC 3 cut(s) 87, 124, 136
LpnPI CCDG 6 cut(s) 90, 107, 123, 143, 164, 220
LweI GCATC 1 cut(s) 76
MaeI CTAG 2 cut(s) 6, 11
MalI GATC 3 cut(s) 89, 126, 138
MboI GATC 3 cut(s) 87, 124, 136
MboII GAAGA 2 cut(s) 64, 190
MluCI AATT 1 cut(s) 74
MmeI TCCRAC 1 cut(s) 195
MnlI CCTC 5 cut(s) 8, 101, 157, 187, 190
MspI CCGG 2 cut(s) 110, 130
MspR9I CCNGG 3 cut(s) 110, 111, 131
Mva1269I GAATGC 1 cut(s) 106
MwoI GCNNNNNNNGC 1 cut(s) 15
NciI CCSGG 3 cut(s) 110, 111, 131
NdeII GATC 3 cut(s) 87, 124, 136
PctI GAATGC 1 cut(s) 106
PfeI GAWTC 1 cut(s) 220
PspPI GGNCC 1 cut(s) 107
Sau3AI GATC 3 cut(s) 87, 124, 136
Sau96I GGNCC 1 cut(s) 107
ScrFI CCNGG 3 cut(s) 110, 111, 131
SetI ASST 1 cut(s) 60
SfaNI GCATC 1 cut(s) 76
SmaI CCCGGG 1 cut(s) 111
Sse9I AATT 1 cut(s) 74
SspMI CTAG 2 cut(s) 6, 11
StyD4I CCNGG 3 cut(s) 108, 109, 129
StyI CCWWGG 1 cut(s) 10
TasI AATT 1 cut(s) 74
TfiI GAWTC 1 cut(s) 220
TspGWI ACGGA 1 cut(s) 235
TspMI CCCGGG 1 cut(s) 109
XapI RAATTY 1 cut(s) 74
XmaI CCCGGG 1 cut(s) 109
XmaJI CCTAGG 1 cut(s) 10
XspI CTAG 2 cut(s) 6, 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.