Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

21560967 .. 21562221

Gene Structure 1255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0126200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGAAGGCACCCAAAAGGGCGAAACCGAGCTGCTCCAGTAACTCTGATGGAAGTGCTCGAAAGAGTTCTCGAATGGTGGCCCCTAAACCGAGTAGCTCCACAACGATCTCCGATGGAGGCCCCCGAAAGAGTACTCGAATCGCCGCCTCTAAAGCATCGGCTTCAGCGACAGTCTCTGAGGTCTCGAATCAAAATTCTCCAATTTTGGAGTCTACAAAGAAAGCTTATGTTAACGGCATCGAAGCGGTGGTTGAGGTACCTAAACTGAAACCTACTTCCGATGAAGCAGTAATTGAGGCACCGAAACCTACTTCCGATGAACCAGTGGTTGAGGCGGAGAAACCTCCTTCCAATGATACGCGGTCGCGAAAAGAGAAGGCACCAGAGGATTTAGAGTTGTCTGCCTCACTTGTCGAAGCCAAAGAGGTGAAGGATCGAAAGAAGCTCATCATGAAGAAGAAAGCCTCCGGTTGTTCCATGAGCTTTTTGAACTACCTTTTCGAGTTGAGATATCTCAAAAATGGAAAGAGCTTCCAGCTGAAGAGAAGGAGTAACTGCTTCAGGTCTTTGGTTGCAGATTTTAGCGATGAGAAAAAGGCAGCCTGTTCAGCAATTGGATTTGATGTGTTGTTGAAGATGTCAGGAAGGAAAATTCACCACTCTATGTTGCGTGTCCTTGTGGACTCCGTAGACCCCAATGCATGTACTATAACTATGCACGGAAAGGAGATTGAAATGGATGCAAGTGACTTTGAAAATGTGATGGGGTTGAAGAATGTTGGGTCCGAGGTCGACTTTAAAGGTTCCACTAATGATCACCCTGAGTTGATGGCGATAATAAACTCCTTGTGTGGGAAGGATAAGAAGATCAGTTTAAGGGACGTGCAGAACTACCTAAAGGACACAGAAGAAGTTGACAACAAGTTCAAGCGTTTGTGCTGTTCACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0016020 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Lectin_legB Pkinase_Tyr

Protein Analysis

316

Amino Acids

34.63

Weight (kDa)

9.16

Isoelectric Point (pI)

43.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	256
AccB1I	GGYRCC	4 cut(s)	7, 256, 298, 379
AccI	GTMKAC	3 cut(s)	212, 690, 792
AccII	CGCG	2 cut(s)	361, 367
AciI	CCGC	4 cut(s)	144, 245, 335, 361
AclWI	GGATC	1 cut(s)	441
AcsI	RAATTY	2 cut(s)	193, 651
AcuI	CTGAAG	3 cut(s)	147, 544, 560
AfaI	GTAC	3 cut(s)	133, 258, 706
AfiI	CCNNNNNNNGG	1 cut(s)	852
AgsI	TTSAA	6 cut(s)	490, 634, 734, 755, 772, 928
AjiI	CACGTC	1 cut(s)	883
AluBI	AGCT	7 cut(s)	30, 96, 224, 445, 483, 531, 538
AluI	AGCT	7 cut(s)	30, 96, 224, 445, 483, 531, 538
Alw21I	GWGCWC	1 cut(s)	58
Alw26I	GTCTC	2 cut(s)	178, 187
AlwI	GGATC	1 cut(s)	441
AlwNI	CAGNNNCTG	1 cut(s)	176
AoxI	GGCC	2 cut(s)	78, 118
ApeKI	GCWGC	2 cut(s)	30, 599
ApoI	RAATTY	2 cut(s)	193, 651
Asp700I	GAANNNNTTC	1 cut(s)	64
Asp718I	GGTACC	1 cut(s)	256
AspS9I	GGNCC	3 cut(s)	79, 119, 783
AsuHPI	GGTGA	3 cut(s)	439, 647, 809
AvaII	GGWCC	1 cut(s)	783
BanI	GGYRCC	4 cut(s)	7, 256, 298, 379
Bbv12I	GWGCWC	1 cut(s)	58
BbvI	GCAGC	2 cut(s)	17, 611
BccI	CCATC	4 cut(s)	41, 107, 757, 823
BceAI	ACGGC	1 cut(s)	250
BclI	TGATCA	1 cut(s)	814
BcoDI	GTCTC	2 cut(s)	178, 187
BisI	GCNGC	3 cut(s)	31, 144, 600
BlsI	GCNGC	3 cut(s)	32, 145, 601
BmcAI	AGTACT	1 cut(s)	133
Bme18I	GGWCC	1 cut(s)	783
BmgBI	CACGTC	1 cut(s)	883
BmgT120I	GGNCC	3 cut(s)	79, 119, 783
BmiI	GGNNCC	8 cut(s)	9, 81, 121, 258, 300, 381, 784, 805
BmsI	GCATC	3 cut(s)	164, 246, 730
BpmI	CTGGAG	1 cut(s)	19
BsaI	GGTCTC	1 cut(s)	187
BsaJI	CCNNGG	1 cut(s)	786
BsaWI	WCCGGW	1 cut(s)	467
Bsc4I	CCNNNNNNNGG	1 cut(s)	852
Bse1I	ACTGG	2 cut(s)	36, 323
BseDI	CCNNGG	1 cut(s)	786
BseGI	GGATG	1 cut(s)	745
BseLI	CCNNNNNNNGG	1 cut(s)	852
BseMII	CTCAG	2 cut(s)	168, 813
BseNI	ACTGG	2 cut(s)	36, 323
BseXI	GCAGC	2 cut(s)	17, 611
BsgI	GTGCAG	1 cut(s)	905
Bsh1236I	CGCG	2 cut(s)	361, 367
Bsh1285I	CGRYCG	1 cut(s)	365
BshFI	GGCC	2 cut(s)	80, 120
BshNI	GGYRCC	4 cut(s)	7, 256, 298, 379
BsiEI	CGRYCG	1 cut(s)	365
BsiHKAI	GWGCWC	1 cut(s)	58
BsiSI	CCGG	1 cut(s)	468
BslFI	GGGAC	1 cut(s)	893
BslI	CCNNNNNNNGG	1 cut(s)	852
BsmAI	GTCTC	2 cut(s)	178, 187
BsmFI	GGGAC	1 cut(s)	893
BsnI	GGCC	2 cut(s)	80, 120
Bso31I	GGTCTC	1 cut(s)	187
Bsp1286I	GDGCHC	1 cut(s)	58
Bsp143I	GATC	4 cut(s)	105, 433, 814, 867
Bsp68I	TCGCGA	1 cut(s)	367
BspACI	CCGC	4 cut(s)	144, 245, 335, 361
BspANI	GGCC	2 cut(s)	80, 120
BspCNI	CTCAG	2 cut(s)	169, 814
BspFNI	CGCG	2 cut(s)	361, 367
BspHI	TCATGA	1 cut(s)	450
BspLI	GGNNCC	8 cut(s)	9, 81, 121, 258, 300, 381, 784, 805
BspPI	GGATC	1 cut(s)	441
BspT107I	GGYRCC	4 cut(s)	7, 256, 298, 379
BspTNI	GGTCTC	1 cut(s)	187
BsrI	ACTGG	2 cut(s)	36, 323
BssECI	CCNNGG	1 cut(s)	786
BssMI	GATC	4 cut(s)	105, 433, 814, 867
Bst4CI	ACNGT	1 cut(s)	172
Bst6I	CTCTTC	1 cut(s)	536
BstDEI	CTNAG	2 cut(s)	177, 822
BstF5I	GGATG	1 cut(s)	745
BstFNI	CGCG	2 cut(s)	361, 367
BstKTI	GATC	4 cut(s)	108, 436, 817, 870
BstMAI	GTCTC	2 cut(s)	178, 187
BstMBI	GATC	4 cut(s)	105, 433, 814, 867
BstMCI	CGRYCG	1 cut(s)	365
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 608
BstNSI	RCATGY	1 cut(s)	705
BstUI	CGCG	2 cut(s)	361, 367
BstV1I	GCAGC	2 cut(s)	17, 611
BsuRI	GGCC	2 cut(s)	80, 120
BtgZI	GCGATG	1 cut(s)	600
BtrI	CACGTC	1 cut(s)	883
BtsCI	GGATG	1 cut(s)	745
BtsIMutI	CAGTG	1 cut(s)	330
BtuMI	TCGCGA	1 cut(s)	367
CaiI	CAGNNNCTG	1 cut(s)	176
CciI	TCATGA	1 cut(s)	450
Cfr13I	GGNCC	3 cut(s)	79, 119, 783
Csp6I	GTAC	3 cut(s)	132, 257, 705
CviAII	CATG	3 cut(s)	451, 478, 702
CviQI	GTAC	3 cut(s)	132, 257, 705
DdeI	CTNAG	2 cut(s)	177, 822
DpnI	GATC	4 cut(s)	107, 435, 816, 869
DpnII	GATC	4 cut(s)	105, 433, 814, 867
DraI	TTTAAA	1 cut(s)	799
Eam1104I	CTCTTC	1 cut(s)	536
EarI	CTCTTC	1 cut(s)	536
EciI	GGCGGA	1 cut(s)	350
Eco31I	GGTCTC	1 cut(s)	187
Eco32I	GATATC	1 cut(s)	512
Eco47I	GGWCC	1 cut(s)	783
Eco57I	CTGAAG	3 cut(s)	147, 544, 560
EcoO109I	RGGNCCY	1 cut(s)	119
EcoRV	GATATC	1 cut(s)	512
EcoT22I	ATGCAT	1 cut(s)	703
FaeI	CATG	3 cut(s)	454, 481, 705
FaiI	YATR	7 cut(s)	228, 452, 479, 665, 703, 710, 716
FaqI	GGGAC	1 cut(s)	893
FatI	CATG	3 cut(s)	450, 477, 701
FbaI	TGATCA	1 cut(s)	814
FblI	GTMKAC	3 cut(s)	212, 690, 792
Fnu4HI	GCNGC	3 cut(s)	31, 144, 600
FokI	GGATG	1 cut(s)	752
Fsp4HI	GCNGC	3 cut(s)	31, 144, 600
GluI	GCNGC	3 cut(s)	31, 144, 600
GsuI	CTGGAG	1 cut(s)	19
HaeIII	GGCC	2 cut(s)	80, 120
HapII	CCGG	1 cut(s)	468
Hin1II	CATG	3 cut(s)	454, 481, 705
HincII	GTYRAC	3 cut(s)	232, 793, 916
HindII	GTYRAC	3 cut(s)	232, 793, 916
HindIII	AAGCTT	1 cut(s)	222
HinfI	GANTC	4 cut(s)	138, 187, 209, 683
HpaI	GTTAAC	1 cut(s)	232
HpaII	CCGG	1 cut(s)	468
HphI	GGTGA	3 cut(s)	439, 647, 809
Hpy166II	GTNNAC	7 cut(s)	213, 232, 682, 691, 793, 916, 944
Hpy188I	TCNGA	6 cut(s)	46, 112, 178, 280, 316, 787
Hpy188III	TCNNGA	5 cut(s)	69, 184, 366, 451, 642
Hpy8I	GTNNAC	7 cut(s)	213, 232, 682, 691, 793, 916, 944
HpyAV	CCTTC	6 cut(s)	357, 370, 424, 540, 639, 850
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4IV	ACGT	1 cut(s)	882
HpyCH4V	TGCA	5 cut(s)	575, 701, 718, 743, 886
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 608
HpyF3I	CTNAG	2 cut(s)	177, 822
HpySE526I	ACGT	1 cut(s)	882
Hsp92II	CATG	3 cut(s)	454, 481, 705
KpnI	GGTACC	1 cut(s)	260
Ksp22I	TGATCA	1 cut(s)	814
KspAI	GTTAAC	1 cut(s)	232
Kzo9I	GATC	4 cut(s)	105, 433, 814, 867
LmnI	GCTCC	2 cut(s)	38, 101
LpnPI	CCDG	9 cut(s)	49, 336, 396, 481, 547, 548, 616, 627, 834
Lsp1109I	GCAGC	2 cut(s)	17, 611
LweI	GCATC	3 cut(s)	164, 246, 730
MaeII	ACGT	1 cut(s)	882
MaeIII	GTNAC	3 cut(s)	38, 551, 746
MalI	GATC	4 cut(s)	107, 435, 816, 869
MboI	GATC	4 cut(s)	105, 433, 814, 867
MboII	GAAGA	7 cut(s)	466, 469, 553, 646, 784, 877, 920
MfeI	CAATTG	1 cut(s)	612
MhlI	GDGCHC	1 cut(s)	58
MluCI	AATT	5 cut(s)	193, 201, 291, 612, 651
MlyI	GAGTC	2 cut(s)	218, 677
Mph1103I	ATGCAT	1 cut(s)	703
MroXI	GAANNNNTTC	1 cut(s)	64
MseI	TTAA	3 cut(s)	231, 798, 875
MspA1I	CMGCKG	1 cut(s)	538
MspI	CCGG	1 cut(s)	468
MunI	CAATTG	1 cut(s)	612
MvnI	CGCG	2 cut(s)	361, 367
MwoI	GCNNNNNNNGC	2 cut(s)	152, 608
NdeII	GATC	4 cut(s)	105, 433, 814, 867
NlaIII	CATG	3 cut(s)	454, 481, 705
NlaIV	GGNNCC	8 cut(s)	9, 81, 121, 258, 300, 381, 784, 805
NmuCI	GTSAC	1 cut(s)	746
NruI	TCGCGA	1 cut(s)	367
NsiI	ATGCAT	1 cut(s)	703
NspI	RCATGY	1 cut(s)	705
PagI	TCATGA	1 cut(s)	450
PcsI	WCGNNNNNNNCGW	1 cut(s)	164
PdmI	GAANNNNTTC	1 cut(s)	64
PfeI	GAWTC	2 cut(s)	138, 187
PkrI	GCNGC	3 cut(s)	32, 145, 601
PleI	GAGTC	2 cut(s)	217, 677
PpsI	GAGTC	2 cut(s)	217, 677
PspN4I	GGNNCC	8 cut(s)	9, 81, 121, 258, 300, 381, 784, 805
PspPI	GGNCC	3 cut(s)	79, 119, 783
PstNI	CAGNNNCTG	1 cut(s)	176
PvuII	CAGCTG	1 cut(s)	538
RruI	TCGCGA	1 cut(s)	367
RsaI	GTAC	3 cut(s)	133, 258, 706
RsaNI	GTAC	3 cut(s)	132, 257, 705
SalI	GTCGAC	1 cut(s)	791
SaqAI	TTAA	3 cut(s)	231, 798, 875
SatI	GCNGC	3 cut(s)	31, 144, 600
Sau3AI	GATC	4 cut(s)	105, 433, 814, 867
Sau96I	GGNCC	3 cut(s)	79, 119, 783
ScaI	AGTACT	1 cut(s)	133
SchI	GAGTC	2 cut(s)	218, 677
SduI	GDGCHC	1 cut(s)	58
SfaNI	GCATC	3 cut(s)	164, 246, 730
SinI	GGWCC	1 cut(s)	783
Sse9I	AATT	5 cut(s)	193, 201, 291, 612, 651
SsiI	CCGC	4 cut(s)	144, 245, 335, 361
TaaI	ACNGT	1 cut(s)	172
TaiI	ACGT	1 cut(s)	885
TaqI	TCGA	9 cut(s)	58, 70, 136, 185, 240, 414, 436, 501, 792
TasI	AATT	5 cut(s)	193, 201, 291, 612, 651
TatI	WGTACW	2 cut(s)	131, 704
TauI	GCSGC	1 cut(s)	146
TfiI	GAWTC	2 cut(s)	138, 187
Tru1I	TTAA	3 cut(s)	231, 798, 875
Tru9I	TTAA	3 cut(s)	231, 798, 875
TscAI	CASTG	1 cut(s)	330
TseFI	GTSAC	1 cut(s)	746
TseI	GCWGC	2 cut(s)	30, 599
Tsp45I	GTSAC	1 cut(s)	746
TspDTI	ATGAA	4 cut(s)	17, 297, 333, 467
TspGWI	ACGGA	2 cut(s)	676, 735
TspRI	CASTG	1 cut(s)	330
VpaK11BI	GGWCC	1 cut(s)	783
XapI	RAATTY	2 cut(s)	193, 651
XceI	RCATGY	1 cut(s)	705
XmiI	GTMKAC	3 cut(s)	212, 690, 792
XmnI	GAANNNNTTC	1 cut(s)	64
ZrmI	AGTACT	1 cut(s)	133
Zsp2I	ATGCAT	1 cut(s)	703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.