Rorug01G0183000

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
N/A
Physical Location & Seq
Reverse (-)
25229612 .. 25230454
843 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0183000.1

Sequence Viewer

Length: 240 bp
ATGTGGTCTGCATATGTACTTATATCATTTTATGAATGGTTTGGGATCAGGGGAAAGGACGTGAGCATTGAAAACCTGCATCAAGGTTTCACTCATATCTTTGAGTCCAGCTTTAAGAGTAATGAGGCTGTTGCGGAGTATCTAGCTCATCCTGCCCATGTTGATTTTGCAAACTTGTTCCGTCCCCATGTGGAGAAAGTCCTTGTGTTTGATTACAAACCCACTACAGTTCGTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

79

Amino Acids

9.23

Weight (kDa)

6.16

Isoelectric Point (pI)

21.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dabb PF07876 18 - 73 3.5e-16 Stress responsive A/B Barrel Domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 84
AciI CCGC 1 cut(s) 134
AclWI GGATC 1 cut(s) 53
AfaI GTAC 1 cut(s) 18
AgsI TTSAA 1 cut(s) 71
AjiI CACGTC 1 cut(s) 61
AluBI AGCT 2 cut(s) 111, 146
AluI AGCT 2 cut(s) 111, 146
AlwI GGATC 1 cut(s) 53
BfaI CTAG 1 cut(s) 143
BfmI CTRYAG 1 cut(s) 225
BfuAI ACCTGC 1 cut(s) 84
BmgBI CACGTC 1 cut(s) 61
BmsI GCATC 1 cut(s) 88
BseGI GGATG 1 cut(s) 148
BslFI GGGAC 1 cut(s) 168
BsmFI GGGAC 1 cut(s) 168
Bsp143I GATC 1 cut(s) 45
BspACI CCGC 1 cut(s) 134
BspMI ACCTGC 1 cut(s) 84
BspPI GGATC 1 cut(s) 53
BssMI GATC 1 cut(s) 45
Bst4CI ACNGT 1 cut(s) 229
BstF5I GGATG 1 cut(s) 148
BstKTI GATC 1 cut(s) 48
BstMBI GATC 1 cut(s) 45
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstSFI CTRYAG 1 cut(s) 225
BtrI CACGTC 1 cut(s) 61
BtsCI GGATG 1 cut(s) 148
BveI ACCTGC 1 cut(s) 84
Csp6I GTAC 1 cut(s) 17
CviAII CATG 2 cut(s) 158, 188
CviJI RGCY 3 cut(s) 111, 128, 146
CviKI_1 RGCY 3 cut(s) 111, 128, 146
CviQI GTAC 1 cut(s) 17
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
FaeI CATG 2 cut(s) 161, 191
FaiI YATR 7 cut(s) 13, 15, 23, 33, 96, 159, 189
FaqI GGGAC 1 cut(s) 168
FatI CATG 2 cut(s) 157, 187
FauNDI CATATG 1 cut(s) 13
FokI GGATG 1 cut(s) 135
FspBI CTAG 1 cut(s) 143
Hin1II CATG 2 cut(s) 161, 191
HinfI GANTC 1 cut(s) 104
Hpy188I TCNGA 1 cut(s) 239
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 3 cut(s) 11, 79, 170
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpySE526I ACGT 1 cut(s) 60
Hsp92II CATG 2 cut(s) 161, 191
Kzo9I GATC 1 cut(s) 45
LpnPI CCDG 4 cut(s) 34, 89, 121, 165
LweI GCATC 1 cut(s) 88
MaeI CTAG 1 cut(s) 143
MaeII ACGT 1 cut(s) 60
MalI GATC 1 cut(s) 47
MboI GATC 1 cut(s) 45
MlyI GAGTC 1 cut(s) 113
MnlI CCTC 1 cut(s) 118
MseI TTAA 1 cut(s) 114
MwoI GCNNNNNNNGC 1 cut(s) 152
NdeI CATATG 1 cut(s) 13
NdeII GATC 1 cut(s) 45
NlaIII CATG 2 cut(s) 161, 191
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
SaqAI TTAA 1 cut(s) 114
Sau3AI GATC 1 cut(s) 45
SchI GAGTC 1 cut(s) 113
SetI ASST 5 cut(s) 63, 78, 88, 113, 148
SfaNI GCATC 1 cut(s) 88
SfcI CTRYAG 1 cut(s) 225
SsiI CCGC 1 cut(s) 134
SspMI CTAG 1 cut(s) 143
TaaI ACNGT 1 cut(s) 229
TaiI ACGT 1 cut(s) 63
TatI WGTACW 1 cut(s) 16
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TspDTI ATGAA 1 cut(s) 48
TspGWI ACGGA 1 cut(s) 170
XspI CTAG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.