Rorug01G0189200

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
N/A
Physical Location & Seq
Forward (+)
26131525 .. 26140154
8630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0189200.1

Sequence Viewer

Length: 6735 bp
ATGGTTATTCGAAAATCCGAATTACCAGAGAATCGCAGCAGAGTGTGGGATCATGAAGAAGCCGTTTCGGTACTTAAACATGATAAGGGGACAAGCGCTGTCAAAGGTATTTTCTTAAGCTCACCTCTACTCTGCAAAGTGCGATTGAAGGCCGACTCATTTTCAAAAATGGACTTTCTTAGATTGTTGAAAATAAAGAATGTGATATTTTCTGGATGCCATGAATACGATCTTTCAAATAAATTAAGCTTCTTGGAATGGCATGACTTTCCTTCAACATCTCTGCCTTCTGATTTTGAACCGAAGAATCTTGTTGAACTGCACTTGCCTCGAAGCCAAATAAAGCAATTATGGGAGAATAATATGACGCCTTCTTTGGAAAAGTTGGTTGTAATGGACCTTAGTGATTGCAAAGAGTTGACCAGTACCCCAGACTTCCAGTCAGTGCCAAATCTTGAGAGTCTAGTTCTCAAAGGTTGTACAGGATTGTCTAAGGTACACCCACCCACTGGAGATCAGCTCCAAAAGCTCATTTCATTGAATCTGGAAGGTTGTGAATCTCTTAGCAGTCTTCCCAACGGTATCTGCAGCTTGAGATCTCTCACAACTTTCATTCTTTCGGGATGTTCCAGACTTGCAAATCTTCCGGAGAAGTTTGGGGAAAACATGAAACAATTATCCGGACTTGATTTGGAGGGGACAGCTATAAAAGGGCTACCAACATCAATTGAGCACTTGACTGGTCTTATTCGGCTCAATCTAAAAGACTGCAAGAACCTTTTAAGTCTGCCAGCTGTCATTTGTAGTTTGACAAAACTTCAAGTTCTCAACCTATCTGGCTGCTCAAATCTTGCTGCTTTGCCAGAAAACCTGGGAAGTTTAGTAGGTTTGAAGGAACTTGATGCAAGCAGAAGTTGTATAAGACAAGTACCTTCCTCCATTCTACTTCTGAAGGACCTTGAAAGTTTATCTTTCTGTGGATGTGGAGGTTTGCCGCCATCAGCATGTCCCATGGGTTTGCAGTTGCCTGCTTCATTCTCGGGATTAGATTCTTTGACAAAATTGGATCTAAGCTATTGCAAACTGTCTGGTGGAGCAATCCCTGCTGATCTTGACTGCTTATCTTCACTTAATCATCTAAATTTAAGTGGGAACAATTTAGTGAGTGTACCGGAAAGCATCACTAAACTTTCTAACCTTGAAGTCCTTCTATTGAATGATTGTAGCGAGCTTCGATCATTACCACATCTTCCACCAAGTATACGACGTGTTTTTGCACGGAATTGTCCTCTGCTCAGAACTTATTCAAATAAATTAACTGTGATGAGTTCAACTGCGACAGGATTTTGTTTCATAAATTCCCAAAGTAGTGAAGAACGTAAACTTCAGAGGATTCCGATATCAGAACAACGTCTTCTGCGGCCTCATTTGCAAAAGTTCTATGAGGATATAATTTATAAAGGTTGTGGTTTTGAATATATTACTCCTCACACTGAAATTCCATCATGGTTCGGTCACCCGGGTAGAGAGTCGTCTGTAACACTCCAGCTACCTCTAGATTATTTCGATGGCAAACGTGAGTTGATGGGACTTGCTCTATGTTTTGTTTATGAAGCGCAGGAGCATGAGAATATGGAATCAACAGCTTCTAGCATCTCGGCTGAGGAAGTAAAATATAGTTGCAATTACAGTTGTCGCTTGTCCACATATGGAGGTCCTCATGATGACTGTCCCCTCCTCGTGTGTAAACTCATGGATCATGATTATGTTGGATCTTTTCGACATTGGGTCTATATAGCAGGAGGACTGTTTGCAGAAAGGTTAATCAAACGCTCTGTTCGAGCTGAAGTTATAATCAACAGACCAGGGGTGAAAGTGAAAGCCTGTCGGGCAAGTCTAATATACTCTGGAGGTGTGACAGAATTTGTTTGGAATTTGAATCTCCGTGATGAAATTCATGTGAGAAATCTGTCGAGTGGGGATCAAAAGGAAAAATCTGACGATCAGTTTAATAAACAAGAACAAGAAACTGTTTGTGATCATCTGCTGGAACTAAAACATGTACCTGTCCAATATCAGGCCCAAATGAACCGCATGATCTCATTGTATGATACTAAACGAAGTAACAAGCGATCCCTTGACCATGATGCCGGATCATCTAGTAGAGCCAGCAGCAGCACTGAAGAACCTCAACAAAGATTAGAAATATCAAAATCCAACGATCAGTCCAACAAACAAGAGCAAGAGACTAATTATGGTTGTGCTACAGACAAAAGATTCTTGATTGAAATTGAACCACACACTTCAAGAGAGAGTTCCACTTCAACCACGATCTTTGATGATCAATTGGGAACAAACGTAGAGTCATTCCTTGAGGAACTATTTGAGCTAGGAGGCAAAGCACGTCGCAACGATTTAGGTTTCATTTTCCCTCTCCGAGCAATTTTGCCGTGGTTTAATCATCAATGCATTGGGAACGTATTCATTCCAGAAAAAGAAAGAATTGGGAGTTCAGTAAGCCTACCTCTTCCTCTAGAATTGTATAACAATAAGGAATGGGTAGGATTTGCTGTATATGTGGCCTTCACTCTGCCTCCAGGTGTTTCACTTGAAAAATCATGTTGCTTCAAGTCTGTATTGTATACTAGTGATGGACATTTTTATTGCCTAAAATTATCGGCGGCTTGTGAAGACAATTTTAGGGGAGCACATCGACTCCTTGTCATCCACATACCACGAGGGCGTTTTAGAAAACAGTTGAATGAGTGCGTGGGAATTCGTGCTGCTTTTGTCTCCTCAACTCCAACTGTGGAGGCTGAGATGTGTGGGATCCGTGTAGTATACGAGCAAGATTTGAAAGGGTTAATCCAAACAATTACCCAATGCACCATAAGAAATCCGCCTGCAGTTTACTATGGACTTGCTCATTCATTCGTGCCAGATGGAAGAGATTCTTTCATGTTAGCTATTATGGAGGATAATTTGATTGAAGCAGCTAAATCCAGCAAAAGGAAGCTTTCAACCTTGCAAGAGCCTTTAACAGATTCAAAGTTCCTCAGTGGTCAAAAAATTTACTTAGAGATAGAGGCTGGAACTCCATACATGCCACACAAGTTCAAAGATTCCATAGTTGACTGGAAAAAAAACCTTGAGCTTTTGCTAGAATGTTTCTTTACCCTTTCTGATCTATCTATTAATCTCACTCTTCACAGAAGCACAACCTCTTTCTCAAGGGATTTTAATCCTTGTTCTGGTATTTTCCTTCAAAGAGAAATTCCAGTGTGGTTTACACCACAATATCCCTCCGAGAGTATGGTGTTGGAACTTCCTCCAAATTTGGAAGATGATTTGAATTTCAATGGACTTGTTGTTTGTGCTGCCTTTTCTGTCCATGCCTCTGAAGCTGACGTCCTCAAATATCTGAAATCAGGACTCCATCCCCAACTTACGTGCCATTTCCAAAATTTGAGTTCTGAATCTTCTGATCAATCTTATGGTCTTACAGCTCCCATGATTGATACCAGTCCCGAGAACAAATTCATGTGGTTATATCGCAGAGGATTCATTTGGCAGGAATACCTACCCCGTGACTTATTTAAGGATCTGCTGCATAAAGATTCTTCAGTCAAGGTTTCATTTAGGAGTGATTCTTCCCAAGTCTTGGAGGTACAGAAATGTAGCTTCCGCATCTTATACAAGCAAGATGTGGAAAAATTCAAGCAAATGTTAATAGAGTGCTTTGCCTCCTTCTTTGACAATTACGACATCATTCGAGCATATTTAGTACAGGATTCTGGAGATTACAGCCACTTAAATCATCATGCAGTTACGCCTTTTTGTCAGGGTGAGACTAGTGGAAAAGCCAATGATCAGCTGGAACTAGGACATGTACCTGTCCAATATCAGCCCCAAATGGACCGCATGATCTCTTTGTATGATACTGAAGGAAGTAACATGCAATCCCTTGACCATGATGCAGGATCATCTAGTAGAACTGGCAGCAGTACTGAAGAACCTCAAATATTAGAAAGACCAGAATCCAATGATCGGTCCGATGAACAAGTGCACGAAACTAATTCTGACCTTACACATGTAGCAGAATGTGGTTATGCTTCAGACAGTAGATTCTTGATTGAAATTGAACCACACACTTCAAGAGATAATTCAAGTTCAACCAAGATTGTTGGTGATCAATTGAGAACAAATGTAGAGTCATTCCTTGAAGAACTATTTGAGCTGGGAGGCAAAGCACGTCGCTATGATTTAGGTTTCATTTTCTCTCTTCGAGCAATTTTACCATGGTTTAAACATCAAGGCATTGGGGACGTGATAGGTGTACCTCTTCCTCTAGAATTGTATAATAACAAGGAATGCATAGGATTTGCTCTATATGTGATCTTCAGTCTGCCCCCAGGTGCTTGGCTTAAAGAAGGTTCTTGTTTTAAAATTGAGTTTACTGAAGAGCCAAGGTATTGCCTAAACTTAGCGTCCGCTGGTGAAGACAATTTCAGGGGTTCACATCGACTCCTGGTTATTCACATACCACAAAGACATTTTGGAGAACAGTTGAACCAGTGGAGTACCATTCGTGCTTCTTTTGAATCCCTTATGCCAGGTGTGGAGGTTGAGATGTGTGGCATGCGTGTAGTATACCAGGAAGATTTGAAAGGGTTAATCCAAACAATTACCAACTGCACAATATGCAGTCCCCCTGCTTACTATGGACTTGCCCAACCATTTGTGCCGGGAAGGTGGTCTTATGTGTTCACACACATGAGGAATAGTTTGGTTGAAGCAGCTAAATCCAGCAAGAGGAAGCTTTCAACCTTGCAAGAGCCTTTAACAGATTTAAAACCCATCCAAGGAATTCAGTTACTGATACTTGCTGCAACTCCATTTACTTCACTCAAGAAAACAGAAACAGTAATCAAGTGGAAAAGAAACCTTAAGCTTTTGCTTCAACGTTTCTTAACCCTTTCTGGTCTATCAATAAGTCTCATTCTTAGAGGAGGCAGAATTTCTTTCTCAGAGGGTCGTAATCTTCATACTGGTATTTTCTTTCAAAAGGAAATTCCAGACTGGTTTACACCACATCACTCTGCCAGTATGGTGCCCGAACTTCCTCCAGATTTGGAAAATGATATGAATTTGATGGGTTTTGTTGTATGTGCTGCCTTTTCAGTCCACGCCTCTAAAGCTGATGTCCTCAAATATCTGGATTCGGGACACCATCCCGAACTTATGTGCCATTTCCAATCAAGTTCTGACTATTCTGGTGTAGTAGTTCGTAACATGGTTGGCATCAATCCGAAGAACAAATTCATGTGGTTTTATCGTAGTGGATTCATTTGGCTGCATTACGTGCCCCGTCACAATGTTGAGCATCTCTTCAATAAACTATCTGAACTAAAGGTTTCATTTGAGAGTGATTCTATTTCTTCCCAAGTATTGGCAGTACAGAAATGTAGCTTCCGTTTCTTATACAAGCAAGATGTAGAAGGATTTAAGCAAACAATAACAGAGTGCTTTACCTCCTTCTTTGACAACGAGGATATCATTAAGCCATATATAGAAGAAGAGGACTCTGGACATAATAAGTGGCCAAATCATGGAGATGAGATGGGACCATCTAGTACAACTGGTGGCAACATTGTCATTGAGCAAACTCAGAATGAGAGATTAGATGTACCCATAACTGATGGGAAGGGGAAAGGCCCTTCTGATGTCTCCTCAGTTGAAGCAGATGAGAGAGTTTATTATGGAACTACACCTGTTTGTCTGGGTGAAACTAGTGGACAAGCCAGTCATCAACTGGAACTACTTACACATGTAGTAGAAGAAGAACATGGTTCTAGTACTTCTCCTCAACAGCTAATCCCATTCTTATCTGAAATTGAACCTCCCGCCTCAACAGGTTCAAGTTCAACCAAATTTGAAGGTGATCAGTTCAGAACTAGTGGAAAATGCAGTGAACAGCTGGAACTAGTTACACATGTAGTAGAAGAAGAACACGGTTCTAGTTGTCCTCCGGAGCTAATGATCCCATTCTTATTTGAAATTGAACCTTCCGCCTCAACAGATTCAAGTCCAACCAAATTTGAAGGTGATCAGTTCAGAACAAATGTGGAGACTTTGCTCGCAGTAATGTTTCGAGATAAGATCAAAGGATATGACTTTGAACATGGTTTTATTTTATCTCCGAGAGTTGGAGCAATTTTGCCATGGTTTAATCACCAAACCATTGGGAGCGAAGCACTAGTACTTCATCTTCCTCCGGATTTATACAACGATAAGAAATGGGCAGGGTTAGCTCTATATGTTGCTTTCACTGTGCCCCCAGGTTATACGGAAAACATTCTATGTCGCTGTTCTTTGTCTACCTCTGCAGGACATGCAGAAGCGATCACAATAGCATGCTCCCAAGGCAATTTTTCCGGATCACGACGACTCTGTATCATTCATAAACCGCGTGCACGTTTTCCAGAACAGTGGAATACGTGTAGTTACATTTCTGCCTTCTTTGAAGTCCTTACTCCAGTTGTGGATGTTGAGATGTGCGGGGTCCATCTAGTATACGAGCAAGATCTGATAGGGATAATCCAAACAATTACCCACTGCACTATCAGGAGTCCGCCTGTTTACTATGGGATTGGATTTGCTAACACACCACGTCAGTCGCAAATGGGTCAGCCTTTTGCGGATATAAATATGGACACAAATTTGAATGTGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

2244

Amino Acids

252.05

Weight (kDa)

5.72

Isoelectric Point (pI)

50.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 173 - 280 2.5e-09 Leucine-rich repeat region
LRR_13 PF23286 198 - 284 1.2e-06 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_13 PF23286 286 - 451 9.6e-09 Disease resistance protein RPS4B-like, leucine-rich repeats
C-JID PF20160 496 - 558 1e-07 C-JID domain
C-JID PF20160 1089 - 1237 3.9e-06 C-JID domain
C-JID PF20160 1434 - 1555 5.6e-06 C-JID domain
C-JID PF20160 1688 - 1833 6.2e-07 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1458, 1853
AasI GACNNNNNNGTC 1 cut(s) 5802
AatII GACGTC 1 cut(s) 3411
AccB1I GGYRCC 1 cut(s) 5110
AccB7I CCANNNNNTGG 4 cut(s) 509, 3661, 5449, 5609
AccI GTMKAC 6 cut(s) 1261, 2642, 2841, 4650, 6377, 6573
AccII CGCG 1 cut(s) 6469
AccIII TCCGGA 5 cut(s) 646, 680, 6028, 6274, 6434
AclI AACGTT 1 cut(s) 4963
AcoI YGGCCR 1 cut(s) 5600
AcyI GRCGYC 2 cut(s) 368, 3408
AfeI AGCGCT 1 cut(s) 97
AflII CTTAAG 2 cut(s) 115, 4946
AflIII ACRYGT 7 cut(s) 1267, 2059, 3886, 4090, 5827, 5992, 6497
AhdI GACNNNNNGTC 3 cut(s) 439, 1787, 2720
AhlI ACTAGT 6 cut(s) 2645, 3851, 5789, 5954, 5983, 6256
AjiI CACGTC 5 cut(s) 1268, 2405, 4253, 4327, 6671
AjnI CCWGG 8 cut(s) 870, 1864, 2596, 4411, 4527, 4612, 4653, 6337
Alw21I GWGCWC 4 cut(s) 735, 2710, 4068, 6475
Alw26I GTCTC 6 cut(s) 2240, 2797, 3842, 5000, 5731, 6122
Alw44I GTGCAC 2 cut(s) 4064, 6471
AlwNI CAGNNNCTG 1 cut(s) 4876
Ama87I CYCGRG 3 cut(s) 1039, 1519, 3527
Aor13HI TCCGGA 5 cut(s) 646, 680, 6028, 6274, 6434
Aor51HI AGCGCT 1 cut(s) 97
AoxI GGCC 6 cut(s) 150, 1421, 2079, 2580, 5600, 5713
ApaLI GTGCAC 2 cut(s) 4064, 6471
ArsI GACNNNNNNTTYG 8 cut(s) 358, 390, 2348, 2380, 3354, 3386, 4196, 4228
AseI ATTAAT 1 cut(s) 3195
Asp700I GAANNNNTTC 7 cut(s) 1206, 1303, 2480, 2950, 3536, 5318, 6354
AspLEI GCGC 2 cut(s) 98, 1618
AspS9I GGNCC 9 cut(s) 397, 955, 1715, 2080, 3916, 4050, 5624, 5714, 6562
AsuC2I CCSGG 3 cut(s) 1520, 1521, 4746
AsuII TTCGAA 1 cut(s) 10
AvaI CYCGRG 3 cut(s) 1039, 1519, 3527
AvaII GGWCC 7 cut(s) 397, 955, 1715, 3916, 4050, 5624, 6562
BaeGI GKGCMC 5 cut(s) 4068, 5115, 5367, 6336, 6475
BalI TGGCCA 1 cut(s) 5602
BamHI GGATCC 1 cut(s) 2829
BanI GGYRCC 1 cut(s) 5110
BarI GAAGNNNNNNTAC 4 cut(s) 6243, 6252, 6275, 6284
BauI CACGAG 2 cut(s) 1739, 2736
BbsI GAAGAC 4 cut(s) 563, 1406, 2697, 4506
Bbv12I GWGCWC 4 cut(s) 735, 2710, 4068, 6475
BbvCI CCTCAGC 1 cut(s) 1662
BceAI ACGGC 2 cut(s) 47, 2434
BcgI CGANNNNNNTGC 2 cut(s) 311, 345
BciT130I CCWGG 8 cut(s) 872, 1866, 2598, 4413, 4529, 4614, 4655, 6339
BclI TGATCA 7 cut(s) 2038, 2341, 3484, 3868, 4189, 5941, 6106
BcnI CCSGG 3 cut(s) 1520, 1521, 4746
BcoDI GTCTC 6 cut(s) 2240, 2797, 3842, 5000, 5731, 6122
BcuI ACTAGT 6 cut(s) 2645, 3851, 5789, 5954, 5983, 6256
BfmI CTRYAG 4 cut(s) 586, 2265, 2904, 6384
BfoI RGCGCY 1 cut(s) 99
BfrI CTTAAG 2 cut(s) 115, 4946
BglI GCCNNNNNGGC 1 cut(s) 1889
BglII AGATCT 2 cut(s) 596, 6583
BmcAI AGTACT 3 cut(s) 4006, 5857, 6261
Bme18I GGWCC 7 cut(s) 397, 955, 1715, 3916, 4050, 5624, 6562
BmeRI GACNNNNNGTC 3 cut(s) 439, 1787, 2720
BmeT110I CYCGRG 3 cut(s) 1039, 1519, 3527
BmgBI CACGTC 5 cut(s) 1268, 2405, 4253, 4327, 6671
BmgT120I GGNCC 9 cut(s) 397, 955, 1715, 2080, 3916, 4050, 5624, 5714, 6562
BmiI GGNNCC 4 cut(s) 2831, 5112, 5625, 6563
BmsI GCATC 9 cut(s) 206, 892, 1188, 1662, 2137, 3696, 3964, 5310, 5392
BpiI GAAGAC 4 cut(s) 563, 1406, 2697, 4506
BplI GAGNNNNNCTC 2 cut(s) 504, 536
BpmI CTGGAG 7 cut(s) 531, 1529, 1929, 2580, 3816, 5109, 6519
Bpu10I CCTNAGC 1 cut(s) 1662
Bpu14I TTCGAA 1 cut(s) 10
BpuEI CTTGAG 6 cut(s) 476, 613, 2393, 3170, 3214, 4892
BpuMI CCSGG 3 cut(s) 1520, 1521, 4746
BsaAI YACGTR 3 cut(s) 3450, 5362, 6498
BsaBI GATNNNNATC 1 cut(s) 3240
BsaHI GRCGYC 2 cut(s) 368, 3408
BsaWI WCCGGW 6 cut(s) 646, 680, 1171, 6028, 6274, 6434
BsaXI ACNNNNNCTCC 6 cut(s) 2578, 2608, 2700, 2730, 4509, 4539
Bse8I GATNNNNATC 1 cut(s) 3240
BseAI TCCGGA 5 cut(s) 646, 680, 6028, 6274, 6434
BseBI CCWGG 8 cut(s) 872, 1866, 2598, 4413, 4529, 4614, 4655, 6339
BseGI GGATG 8 cut(s) 221, 629, 986, 2724, 3436, 4857, 5230, 6550
BseJI GATNNNNATC 1 cut(s) 3240
BseMII CTCAG 7 cut(s) 1309, 1653, 2808, 3070, 5040, 5681, 5745
BseRI GAGGAG 6 cut(s) 1476, 1727, 2785, 5022, 5719, 5853
BseSI GKGCMC 5 cut(s) 4068, 5115, 5367, 6336, 6475
BseYI CCCAGC 1 cut(s) 4237
BsgI GTGCAG 3 cut(s) 305, 4678, 6601
Bsh1236I CGCG 1 cut(s) 6469
BshFI GGCC 6 cut(s) 152, 1423, 2081, 2582, 5602, 5715
BshNI GGYRCC 1 cut(s) 5110
BsiHKAI GWGCWC 4 cut(s) 735, 2710, 4068, 6475
BsiHKCI CYCGRG 3 cut(s) 1039, 1519, 3527
BsiSI CCGG 9 cut(s) 647, 681, 1172, 1520, 2151, 4745, 6029, 6275, 6435
BsmAI GTCTC 6 cut(s) 2240, 2797, 3842, 5000, 5731, 6122
BsmI GAATGC 1 cut(s) 4376
BsnI GGCC 6 cut(s) 152, 1423, 2081, 2582, 5602, 5715
BsoBI CYCGRG 3 cut(s) 1039, 1519, 3527
Bsp119I TTCGAA 1 cut(s) 10
Bsp1286I GDGCHC 7 cut(s) 735, 2710, 4068, 5115, 5367, 6336, 6475
Bsp13I TCCGGA 5 cut(s) 646, 680, 6028, 6274, 6434
Bsp1407I TGTACA 1 cut(s) 479
Bsp19I CCATGG 3 cut(s) 1011, 4298, 6221
BspANI GGCC 6 cut(s) 152, 1423, 2081, 2582, 5602, 5715
BspCNI CTCAG 7 cut(s) 1308, 1654, 2809, 3069, 5039, 5680, 5744
BspEI TCCGGA 5 cut(s) 646, 680, 6028, 6274, 6434
BspFNI CGCG 1 cut(s) 6469
BspHI TCATGA 3 cut(s) 52, 1720, 1759
BspLI GGNNCC 4 cut(s) 2831, 5112, 5625, 6563
BspMAI CTGCAG 3 cut(s) 590, 2908, 6388
BspQI GCTCTTC 1 cut(s) 4455
BspT104I TTCGAA 1 cut(s) 10
BspT107I GGYRCC 1 cut(s) 5110
BspTI CTTAAG 2 cut(s) 115, 4946
BsrGI TGTACA 1 cut(s) 479
BssNAI GTATAC 5 cut(s) 1262, 2643, 2842, 4651, 6574
BssNI GRCGYC 2 cut(s) 368, 3408
BssSI CACGAG 2 cut(s) 1739, 2736
BssT1I CCWWGG 6 cut(s) 1011, 4298, 4466, 4861, 6221, 6421
Bst1107I GTATAC 5 cut(s) 1262, 2643, 2842, 4651, 6574
Bst2BI CACGAG 2 cut(s) 1739, 2736
Bst2UI CCWGG 8 cut(s) 872, 1866, 2598, 4413, 4529, 4614, 4655, 6339
Bst6I CTCTTC 8 cut(s) 2532, 2941, 3210, 4287, 4347, 4455, 5393, 5571
BstACI GRCGYC 2 cut(s) 368, 3408
BstAFI CTTAAG 2 cut(s) 115, 4946
BstAPI GCANNNNNTGC 4 cut(s) 1103, 4701, 5362, 6392
BstAUI TGTACA 1 cut(s) 479
BstBAI YACGTR 3 cut(s) 3450, 5362, 6498
BstBI TTCGAA 1 cut(s) 10
BstDSI CCRYGG 4 cut(s) 1011, 2450, 4298, 6221
BstEII GGTNACC 1 cut(s) 1514
BstF5I GGATG 8 cut(s) 221, 629, 986, 2724, 3436, 4857, 5230, 6550
BstFNI CGCG 1 cut(s) 6469
BstH2I RGCGCY 1 cut(s) 99
BstHHI GCGC 2 cut(s) 98, 1618
BstMAI GTCTC 6 cut(s) 2240, 2797, 3842, 5000, 5731, 6122
BstNI CCWGG 8 cut(s) 872, 1866, 2598, 4413, 4529, 4614, 4655, 6339
BstPI GGTNACC 1 cut(s) 1514
BstSFI CTRYAG 4 cut(s) 586, 2265, 2904, 6384
BstSLI GKGCMC 5 cut(s) 4068, 5115, 5367, 6336, 6475
BstUI CGCG 1 cut(s) 6469
BstV2I GAAGAC 4 cut(s) 563, 1406, 2697, 4506
BstX2I RGATCY 6 cut(s) 596, 1066, 1772, 2829, 3601, 6583
BstXI CCANNNNNNTGG 3 cut(s) 4419, 6242, 6489
BstYI RGATCY 6 cut(s) 596, 1066, 1772, 2829, 3601, 6583
BstZ17I GTATAC 5 cut(s) 1262, 2643, 2842, 4651, 6574
BsuRI GGCC 6 cut(s) 152, 1423, 2081, 2582, 5602, 5715
BtgI CCRYGG 4 cut(s) 1011, 2450, 4298, 6221
BtrI CACGTC 5 cut(s) 1268, 2405, 4253, 4327, 6671
BtsCI GGATG 8 cut(s) 221, 629, 986, 2724, 3436, 4857, 5230, 6550
BtsI GCAGTG 2 cut(s) 5974, 6613
CaiI CAGNNNCTG 1 cut(s) 4876
CciI TCATGA 3 cut(s) 52, 1720, 1759
CfoI GCGC 2 cut(s) 98, 1618
Cfr13I GGNCC 9 cut(s) 397, 955, 1715, 2080, 3916, 4050, 5624, 5714, 6562
Cfr9I CCCGGG 1 cut(s) 1519
CpoI CGGWCCG 1 cut(s) 4050
CseI GACGC 2 cut(s) 376, 4476
CspCI CAANNNNNGTGG 2 cut(s) 2317, 2352
CspI CGGWCCG 1 cut(s) 4050
DraI TTTAAA 3 cut(s) 4306, 4444, 4851
DrdI GACNNNNNNGTC 1 cut(s) 5802
DriI GACNNNNNGTC 3 cut(s) 439, 1787, 2720
DseDI GACNNNNNNGTC 1 cut(s) 5802
EaeI YGGCCR 1 cut(s) 5600
Eam1104I CTCTTC 8 cut(s) 2532, 2941, 3210, 4287, 4347, 4455, 5393, 5571
Eam1105I GACNNNNNGTC 3 cut(s) 439, 1787, 2720
EarI CTCTTC 8 cut(s) 2532, 2941, 3210, 4287, 4347, 4455, 5393, 5571
EciI GGCGGA 3 cut(s) 2889, 6058, 6621
Eco130I CCWWGG 6 cut(s) 1011, 4298, 4466, 4861, 6221, 6421
Eco32I GATATC 2 cut(s) 1401, 5554
Eco47I GGWCC 7 cut(s) 397, 955, 1715, 3916, 4050, 5624, 6562
Eco47III AGCGCT 1 cut(s) 97
Eco88I CYCGRG 3 cut(s) 1039, 1519, 3527
Eco91I GGTNACC 1 cut(s) 1514
EcoO109I RGGNCCY 3 cut(s) 955, 1715, 5714
EcoO65I GGTNACC 1 cut(s) 1514
EcoRI GAATTC 2 cut(s) 2775, 4866
EcoRII CCWGG 8 cut(s) 870, 1864, 2596, 4411, 4527, 4612, 4653, 6337
EcoRV GATATC 2 cut(s) 1401, 5554
EcoT14I CCWWGG 6 cut(s) 1011, 4298, 4466, 4861, 6221, 6421
EcoT22I ATGCAT 2 cut(s) 2471, 4376
ErhI CCWWGG 6 cut(s) 1011, 4298, 4466, 4861, 6221, 6421
FalI AAGNNNNNCTT 6 cut(s) 955, 987, 2938, 2970, 4741, 4773
FauI CCCGC 2 cut(s) 5911, 6551
FauNDI CATATG 1 cut(s) 1708
FbaI TGATCA 7 cut(s) 2038, 2341, 3484, 3868, 4189, 5941, 6106
FblI GTMKAC 6 cut(s) 1261, 2642, 2841, 4650, 6377, 6573
FokI GGATG 8 cut(s) 228, 636, 993, 2711, 3423, 4844, 5217, 6557
GlaI GCGC 2 cut(s) 97, 1617
GsaI CCCAGC 1 cut(s) 4241
GsuI CTGGAG 7 cut(s) 531, 1529, 1929, 2580, 3816, 5109, 6519
HaeII RGCGCY 1 cut(s) 99
HaeIII GGCC 6 cut(s) 152, 1423, 2081, 2582, 5602, 5715
HapII CCGG 9 cut(s) 647, 681, 1172, 1520, 2151, 4745, 6029, 6275, 6435
HgaI GACGC 2 cut(s) 376, 4476
HhaI GCGC 2 cut(s) 98, 1618
Hin1I GRCGYC 2 cut(s) 368, 3408
Hin6I GCGC 2 cut(s) 96, 1616
HinP1I GCGC 2 cut(s) 96, 1616
HincII GTYRAC 2 cut(s) 420, 3133
HindII GTYRAC 2 cut(s) 420, 3133
HindIII AAGCTT 4 cut(s) 247, 3014, 4817, 4949
HpaII CCGG 9 cut(s) 647, 681, 1172, 1520, 2151, 4745, 6029, 6275, 6435
Hpy99I CGWCG 4 cut(s) 1269, 2409, 4257, 6447
Hsp92I GRCGYC 2 cut(s) 368, 3408
HspAI GCGC 2 cut(s) 96, 1616
Kpn2I TCCGGA 5 cut(s) 646, 680, 6028, 6274, 6434
Ksp22I TGATCA 7 cut(s) 2038, 2341, 3484, 3868, 4189, 5941, 6106
LguI GCTCTTC 1 cut(s) 4455
LmnI GCTCC 9 cut(s) 525, 1094, 1621, 2705, 3511, 6031, 6209, 6246, 6422
LweI GCATC 9 cut(s) 206, 892, 1188, 1662, 2137, 3696, 3964, 5310, 5392
MfeI CAATTG 3 cut(s) 726, 2345, 4193
MflI RGATCY 6 cut(s) 596, 1066, 1772, 2829, 3601, 6583
MhlI GDGCHC 7 cut(s) 735, 2710, 4068, 5115, 5367, 6336, 6475
MlsI TGGCCA 1 cut(s) 5602
MluNI TGGCCA 1 cut(s) 5602
MmeI TCCRAC 7 cut(s) 1750, 2241, 2253, 2828, 3300, 6113, 6187
Mox20I TGGCCA 1 cut(s) 5602
Mph1103I ATGCAT 2 cut(s) 2471, 4376
MroI TCCGGA 5 cut(s) 646, 680, 6028, 6274, 6434
MroXI GAANNNNTTC 7 cut(s) 1206, 1303, 2480, 2950, 3536, 5318, 6354
MscI TGGCCA 1 cut(s) 5602
MslI CAYNNNNRTG 4 cut(s) 1003, 1764, 4772, 5613
Msp20I TGGCCA 1 cut(s) 5602
MspA1I CMGCKG 4 cut(s) 794, 3874, 4493, 5977
MspCI CTTAAG 2 cut(s) 115, 4946
MspI CCGG 9 cut(s) 647, 681, 1172, 1520, 2151, 4745, 6029, 6275, 6435
MssI GTTTAAAC 1 cut(s) 4306
MunI CAATTG 3 cut(s) 726, 2345, 4193
Mva1269I GAATGC 1 cut(s) 4376
MvaI CCWGG 8 cut(s) 872, 1866, 2598, 4413, 4529, 4614, 4655, 6339
MvnI CGCG 1 cut(s) 6469
NciI CCSGG 3 cut(s) 1520, 1521, 4746
NcoI CCATGG 3 cut(s) 1011, 4298, 6221
NdeI CATATG 1 cut(s) 1708
NlaIV GGNNCC 4 cut(s) 2831, 5112, 5625, 6563
NmeAIII GCCGAG 1 cut(s) 1637
NmuCI GTSAC 4 cut(s) 1514, 1915, 3587, 5369
NsiI ATGCAT 2 cut(s) 2471, 4376
NspV TTCGAA 1 cut(s) 10
PaeI GCATGC 2 cut(s) 4642, 6417
PagI TCATGA 3 cut(s) 52, 1720, 1759
PciI ACATGT 5 cut(s) 2059, 3886, 4090, 5827, 5992
PciSI GCTCTTC 1 cut(s) 4455
PcsI WCGNNNNNNNCGW 1 cut(s) 1837
PctI GAATGC 1 cut(s) 4376
PdmI GAANNNNTTC 7 cut(s) 1206, 1303, 2480, 2950, 3536, 5318, 6354
PflMI CCANNNNNTGG 4 cut(s) 509, 3661, 5449, 5609
PmeI GTTTAAAC 1 cut(s) 4306
Ppu21I YACGTR 3 cut(s) 3450, 5362, 6498
PpuMI RGGWCCY 2 cut(s) 955, 1715
PscI ACATGT 5 cut(s) 2059, 3886, 4090, 5827, 5992
PshBI ATTAAT 1 cut(s) 3195
PsiI TTATAA 2 cut(s) 1458, 1853
Psp1406I AACGTT 1 cut(s) 4963
Psp5II RGGWCCY 2 cut(s) 955, 1715
Psp6I CCWGG 8 cut(s) 870, 1864, 2596, 4411, 4527, 4612, 4653, 6337
PspEI GGTNACC 1 cut(s) 1514
PspFI CCCAGC 1 cut(s) 4237
PspGI CCWGG 8 cut(s) 870, 1864, 2596, 4411, 4527, 4612, 4653, 6337
PspN4I GGNNCC 4 cut(s) 2831, 5112, 5625, 6563
PspPI GGNCC 9 cut(s) 397, 955, 1715, 2080, 3916, 4050, 5624, 5714, 6562
PspPPI RGGWCCY 2 cut(s) 955, 1715
PstI CTGCAG 3 cut(s) 590, 2908, 6388
PstNI CAGNNNCTG 1 cut(s) 4876
PsuI RGATCY 6 cut(s) 596, 1066, 1772, 2829, 3601, 6583
PvuII CAGCTG 3 cut(s) 794, 3874, 5977
RseI CAYNNNNRTG 4 cut(s) 1003, 1764, 4772, 5613
Rsr2I CGGWCCG 1 cut(s) 4050
RsrII CGGWCCG 1 cut(s) 4050
SapI GCTCTTC 1 cut(s) 4455
Sau96I GGNCC 9 cut(s) 397, 955, 1715, 2080, 3916, 4050, 5624, 5714, 6562
ScaI AGTACT 3 cut(s) 4006, 5857, 6261
SduI GDGCHC 7 cut(s) 735, 2710, 4068, 5115, 5367, 6336, 6475
SfaNI GCATC 9 cut(s) 206, 892, 1188, 1662, 2137, 3696, 3964, 5310, 5392
SfcI CTRYAG 4 cut(s) 586, 2265, 2904, 6384
SfuI TTCGAA 1 cut(s) 10
SinI GGWCC 7 cut(s) 397, 955, 1715, 3916, 4050, 5624, 6562
SmaI CCCGGG 1 cut(s) 1521
SmiMI CAYNNNNRTG 4 cut(s) 1003, 1764, 4772, 5613
SmlI CTYRAG 8 cut(s) 115, 455, 592, 2372, 3149, 3229, 4907, 4946
SmoI CTYRAG 8 cut(s) 115, 455, 592, 2372, 3149, 3229, 4907, 4946
SpeI ACTAGT 6 cut(s) 2645, 3851, 5789, 5954, 5983, 6256
SphI GCATGC 2 cut(s) 4642, 6417
SspI AATATT 1 cut(s) 4023
StyI CCWWGG 6 cut(s) 1011, 4298, 4466, 4861, 6221, 6421
TaqII GACCGA 2 cut(s) 1502, 4038
TatI WGTACW 7 cut(s) 479, 3784, 4004, 5455, 5633, 5855, 6259
TauI GCSGC 3 cut(s) 997, 1423, 2684
TseFI GTSAC 4 cut(s) 1514, 1915, 3587, 5369
Tsp45I GTSAC 4 cut(s) 1514, 1915, 3587, 5369
TspGWI ACGGA 5 cut(s) 1294, 1934, 2822, 5462, 6362
TspMI CCCGGG 1 cut(s) 1519
Van91I CCANNNNNTGG 4 cut(s) 509, 3661, 5449, 5609
Vha464I CTTAAG 2 cut(s) 115, 4946
VneI GTGCAC 2 cut(s) 4064, 6471
VpaK11BI GGWCC 7 cut(s) 397, 955, 1715, 3916, 4050, 5624, 6562
VspI ATTAAT 1 cut(s) 3195
XbaI TCTAGA 3 cut(s) 1555, 2533, 4348
XcmI CCANNNNNNNNNTGG 2 cut(s) 3871, 5809
XmaI CCCGGG 1 cut(s) 1519
XmiI GTMKAC 6 cut(s) 1261, 2642, 2841, 4650, 6377, 6573
XmnI GAANNNNTTC 7 cut(s) 1206, 1303, 2480, 2950, 3536, 5318, 6354
ZraI GACGTC 1 cut(s) 3409
ZrmI AGTACT 3 cut(s) 4006, 5857, 6261
Zsp2I ATGCAT 2 cut(s) 2471, 4376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.