Rorug01G0235300

receptor-like protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
N/A
Physical Location & Seq
Reverse (-)
33939076 .. 33939333
258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0235300.1

Sequence Viewer

Length: 258 bp
ATGGTCTTAATAGCACTAGCGCTTCTAGTATCATCGATTGCAGCACAACAACGAGGAGGCGCATCGGTCTGGTTAGAGCCTCGTCGCCTACAAGACCCACCTTGTCCAACAATTGGGATTTTCATTTCGCCGCTACTACTACTACTACTTCAGTTCCACGCGTCCCCAGATTCAAAGAGCTCGATACCACCAACATGCTCCTCCGTCAGAGAATCATCTTCTTGGGTTCTCATGTTTCATTTTCATTTGAATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

85

Amino Acids

9.36

Weight (kDa)

7.88

Isoelectric Point (pI)

57.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 113
AccII CGCG 1 cut(s) 161
AciI CCGC 1 cut(s) 131
AcuI CTGAAG 1 cut(s) 134
AfeI AGCGCT 1 cut(s) 21
AfiI CCNNNNNNNGG 1 cut(s) 113
AflIII ACRYGT 1 cut(s) 159
AgsI TTSAA 2 cut(s) 174, 250
AluBI AGCT 1 cut(s) 180
AluI AGCT 1 cut(s) 180
Alw21I GWGCWC 1 cut(s) 182
Aor51HI AGCGCT 1 cut(s) 21
ApeKI GCWGC 1 cut(s) 41
AspLEI GCGC 2 cut(s) 22, 62
BanII GRGCYC 1 cut(s) 182
Bbv12I GWGCWC 1 cut(s) 182
BbvI GCAGC 1 cut(s) 53
BfaI CTAG 2 cut(s) 17, 26
BfoI RGCGCY 1 cut(s) 23
BisI GCNGC 2 cut(s) 42, 131
BlsI GCNGC 2 cut(s) 43, 132
BmsI GCATC 1 cut(s) 71
Bsa29I ATCGAT 1 cut(s) 35
Bsc4I CCNNNNNNNGG 1 cut(s) 113
BseCI ATCGAT 1 cut(s) 35
BseLI CCNNNNNNNGG 1 cut(s) 113
BseRI GAGGAG 2 cut(s) 69, 190
BseXI GCAGC 1 cut(s) 53
Bsh1236I CGCG 1 cut(s) 161
BshVI ATCGAT 1 cut(s) 35
BsiHKAI GWGCWC 1 cut(s) 182
BslFI GGGAC 1 cut(s) 148
BslI CCNNNNNNNGG 1 cut(s) 113
BsmFI GGGAC 1 cut(s) 148
Bsp1286I GDGCHC 1 cut(s) 182
BspACI CCGC 1 cut(s) 131
BspDI ATCGAT 1 cut(s) 35
BspFNI CGCG 1 cut(s) 161
BstFNI CGCG 1 cut(s) 161
BstH2I RGCGCY 1 cut(s) 23
BstHHI GCGC 2 cut(s) 22, 62
BstNSI RCATGY 1 cut(s) 198
BstUI CGCG 1 cut(s) 161
BstV1I GCAGC 1 cut(s) 53
Bsu15I ATCGAT 1 cut(s) 35
BsuTUI ATCGAT 1 cut(s) 35
CfoI GCGC 2 cut(s) 22, 62
ClaI ATCGAT 1 cut(s) 35
CseI GACGC 1 cut(s) 150
CviAII CATG 2 cut(s) 195, 232
CviJI RGCY 2 cut(s) 79, 180
CviKI_1 RGCY 2 cut(s) 79, 180
Ecl136II GAGCTC 1 cut(s) 180
Eco24I GRGCYC 1 cut(s) 182
Eco47III AGCGCT 1 cut(s) 21
Eco53kI GAGCTC 1 cut(s) 180
Eco57I CTGAAG 1 cut(s) 134
EcoICRI GAGCTC 1 cut(s) 180
EcoT38I GRGCYC 1 cut(s) 182
FaeI CATG 2 cut(s) 198, 235
FaiI YATR 2 cut(s) 196, 233
FaqI GGGAC 1 cut(s) 148
FatI CATG 2 cut(s) 194, 231
Fnu4HI GCNGC 2 cut(s) 42, 131
FriOI GRGCYC 1 cut(s) 182
Fsp4HI GCNGC 2 cut(s) 42, 131
FspBI CTAG 2 cut(s) 17, 26
GlaI GCGC 2 cut(s) 21, 61
GluI GCNGC 2 cut(s) 42, 131
HaeII RGCGCY 1 cut(s) 23
HgaI GACGC 1 cut(s) 150
HhaI GCGC 2 cut(s) 22, 62
Hin1II CATG 2 cut(s) 198, 235
Hin6I GCGC 2 cut(s) 20, 60
HinP1I GCGC 2 cut(s) 20, 60
HinfI GANTC 2 cut(s) 170, 212
Hpy188I TCNGA 1 cut(s) 209
Hpy99I CGWCG 1 cut(s) 87
HpyCH4V TGCA 1 cut(s) 41
Hsp92II CATG 2 cut(s) 198, 235
HspAI GCGC 2 cut(s) 20, 60
LmnI GCTCC 1 cut(s) 203
LpnPI CCDG 2 cut(s) 55, 180
Lsp1109I GCAGC 1 cut(s) 53
LweI GCATC 1 cut(s) 71
MaeI CTAG 2 cut(s) 17, 26
MboII GAAGA 1 cut(s) 210
MfeI CAATTG 1 cut(s) 111
MhlI GDGCHC 1 cut(s) 182
MluCI AATT 2 cut(s) 111, 250
MluI ACGCGT 1 cut(s) 159
MmeI TCCRAC 1 cut(s) 131
MnlI CCTC 4 cut(s) 47, 50, 90, 211
MseI TTAA 1 cut(s) 8
MslI CAYNNNNRTG 1 cut(s) 193
MunI CAATTG 1 cut(s) 111
MvnI CGCG 1 cut(s) 161
NlaIII CATG 2 cut(s) 198, 235
NspI RCATGY 1 cut(s) 198
PfeI GAWTC 2 cut(s) 170, 212
PflMI CCANNNNNTGG 1 cut(s) 113
PkrI GCNGC 2 cut(s) 43, 132
Psp124BI GAGCTC 1 cut(s) 182
RseI CAYNNNNRTG 1 cut(s) 193
SacI GAGCTC 1 cut(s) 182
SaqAI TTAA 1 cut(s) 8
SatI GCNGC 2 cut(s) 42, 131
SduI GDGCHC 1 cut(s) 182
SetI ASST 2 cut(s) 103, 182
SfaNI GCATC 1 cut(s) 71
SmiMI CAYNNNNRTG 1 cut(s) 193
Sse9I AATT 2 cut(s) 111, 250
SsiI CCGC 1 cut(s) 131
SspMI CTAG 2 cut(s) 17, 26
SstI GAGCTC 1 cut(s) 182
TaqI TCGA 2 cut(s) 35, 182
TaqII GACCGA 1 cut(s) 55
TasI AATT 2 cut(s) 111, 250
TauI GCSGC 1 cut(s) 133
TfiI GAWTC 2 cut(s) 170, 212
Tru1I TTAA 1 cut(s) 8
Tru9I TTAA 1 cut(s) 8
TseI GCWGC 1 cut(s) 41
TspDTI ATGAA 3 cut(s) 112, 227, 233
TspGWI ACGGA 1 cut(s) 193
Van91I CCANNNNNTGG 1 cut(s) 113
XceI RCATGY 1 cut(s) 198
XspI CTAG 2 cut(s) 17, 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.