Rorug01G0331400
HSP70 Family

Heat shock cognate 70 kDa

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
N/A
Physical Location & Seq
Reverse (-)
44991222 .. 44991980
759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0331400.1

Sequence Viewer

Length: 759 bp
ATGCCGGAAAAAGCTCTTGGGTTGTTTCCAGATTTAGGTGCCTCTTATTTTTTGTCAAGGCTTCCTGGATTCTTTGGAGAATATCTTGGTCTTACTGGTGCTAGATTGGACGGTTCTGAAATGCTCGCTTGTGGTTTAGCAACTCACTTTGTTCCCTCAGCCAAATTGACCTCGTTAGAAGAAGCTCTAGTATCAAAAATTGCTTCAAAAAATATATCAAGCAGTGACCTTGTTGATAATATTTCAGCTATTATTAATGAATACTCGATTCAACCAGCTATAAAAGAGAAAAGTGCTTGCCACAAAATGGATGTTATTGACGAGTGCTTTTCTAAGAGAACAGTGGAGGAAATTTTAAGTGCTCTTGAGAAGGAGCTTGCTACCATTGGTTTAAATGGTCGTGAATGGTTGTCTTCATCGATTGAATCCCTGAAGAAGGCATCGCCGATAAGTTTGAAGATTACATTGAGATCGATTCGAGAAGGAAGGATGCAAGGAGTTGGCGAGTGCCTTGTTCGTGAGTACAGAATGTTTTGCCATGTTATGAGAGGGGAAATCAGCAAGGATTTCAGGGAGGGTTGTAGAGCTATATTGTTGGATAAGGATAAGAACCCGAAATGGGAGCCTTCGAAGTTGGAGCTCATCACTGATGAGATGGTTGATCACTACTTCTCGAAATTAGATGATGATGAAGAATGGGAAGAGTTAAAGCTGCCTGAAAGATCTAATTTGTATGGTACTGCCATTGCCAAGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

252

Amino Acids

28.22

Weight (kDa)

5.24

Isoelectric Point (pI)

47.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ECH_2 PF16113 1 - 224 1.2e-68 Enoyl-CoA hydratase/isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 38
AccB7I CCANNNNNTGG 1 cut(s) 307
AcsI RAATTY 1 cut(s) 351
AcuI CTGAAG 1 cut(s) 452
AfaI GTAC 2 cut(s) 524, 739
AfiI CCNNNNNNNGG 4 cut(s) 35, 307, 436, 619
AgsI TTSAA 4 cut(s) 207, 272, 425, 457
AjnI CCWGG 1 cut(s) 64
AjuI GAANNNNNNNTTGG 1 cut(s) 32
AluBI AGCT 9 cut(s) 14, 185, 248, 278, 376, 587, 640, 712, 754
AluI AGCT 9 cut(s) 14, 185, 248, 278, 376, 587, 640, 712, 754
Alw21I GWGCWC 2 cut(s) 364, 642
ApeKI GCWGC 1 cut(s) 712
ApoI RAATTY 1 cut(s) 351
AseI ATTAAT 1 cut(s) 255
AsuII TTCGAA 1 cut(s) 629
BanI GGYRCC 1 cut(s) 38
BanII GRGCYC 1 cut(s) 642
BbsI GAAGAC 1 cut(s) 405
Bbv12I GWGCWC 2 cut(s) 364, 642
BbvCI CCTCAGC 1 cut(s) 157
BbvI GCAGC 1 cut(s) 699
BccI CCATC 1 cut(s) 649
BciT130I CCWGG 1 cut(s) 66
BclI TGATCA 1 cut(s) 661
BfaI CTAG 2 cut(s) 102, 188
BglII AGATCT 1 cut(s) 722
BisI GCNGC 1 cut(s) 713
BlsI GCNGC 1 cut(s) 714
Bme1390I CCNGG 1 cut(s) 66
BmiI GGNNCC 2 cut(s) 40, 624
BmrFI CCNGG 1 cut(s) 66
BmsI GCATC 2 cut(s) 449, 480
BpiI GAAGAC 1 cut(s) 405
Bpu10I CCTNAGC 1 cut(s) 157
Bpu14I TTCGAA 1 cut(s) 629
BpuEI CTTGAG 1 cut(s) 386
Bsa29I ATCGAT 2 cut(s) 419, 473
Bsc4I CCNNNNNNNGG 4 cut(s) 35, 307, 436, 619
Bse1I ACTGG 1 cut(s) 100
Bse3DI GCAATG 1 cut(s) 744
BseBI CCWGG 1 cut(s) 66
BseCI ATCGAT 2 cut(s) 419, 473
BseGI GGATG 2 cut(s) 316, 495
BseLI CCNNNNNNNGG 4 cut(s) 35, 307, 436, 619
BseMI GCAATG 1 cut(s) 744
BseMII CTCAG 1 cut(s) 171
BseNI ACTGG 1 cut(s) 100
BseXI GCAGC 1 cut(s) 699
BshNI GGYRCC 1 cut(s) 38
BshVI ATCGAT 2 cut(s) 419, 473
BsiHKAI GWGCWC 2 cut(s) 364, 642
BsiSI CCGG 1 cut(s) 5
BslI CCNNNNNNNGG 4 cut(s) 35, 307, 436, 619
Bsp119I TTCGAA 1 cut(s) 629
Bsp1286I GDGCHC 2 cut(s) 364, 642
Bsp143I GATC 3 cut(s) 470, 661, 722
BspCNI CTCAG 1 cut(s) 170
BspDI ATCGAT 2 cut(s) 419, 473
BspLI GGNNCC 2 cut(s) 40, 624
BspT104I TTCGAA 1 cut(s) 629
BspT107I GGYRCC 1 cut(s) 38
BsrDI GCAATG 1 cut(s) 744
BsrI ACTGG 1 cut(s) 100
BssMI GATC 3 cut(s) 470, 661, 722
Bst2UI CCWGG 1 cut(s) 66
Bst4CI ACNGT 2 cut(s) 113, 343
Bst6I CTCTTC 1 cut(s) 696
BstBI TTCGAA 1 cut(s) 629
BstC8I GCNNGC 3 cut(s) 126, 298, 378
BstDEI CTNAG 2 cut(s) 157, 333
BstENI CCTNNNNNAGG 1 cut(s) 434
BstF5I GGATG 2 cut(s) 316, 495
BstKTI GATC 3 cut(s) 473, 664, 725
BstMBI GATC 3 cut(s) 470, 661, 722
BstNI CCWGG 1 cut(s) 66
BstSCI CCNGG 1 cut(s) 64
BstV1I GCAGC 1 cut(s) 699
BstV2I GAAGAC 1 cut(s) 405
BstX2I RGATCY 1 cut(s) 722
BstYI RGATCY 1 cut(s) 722
Bsu15I ATCGAT 2 cut(s) 419, 473
BsuTUI ATCGAT 2 cut(s) 419, 473
BtgZI GCGATG 1 cut(s) 426
BtsCI GGATG 2 cut(s) 316, 495
BtsI GCAGTG 1 cut(s) 229
BtsIMutI CAGTG 3 cut(s) 229, 348, 645
Cac8I GCNNGC 3 cut(s) 126, 298, 378
ClaI ATCGAT 2 cut(s) 419, 473
Csp6I GTAC 2 cut(s) 523, 738
CviAII CATG 1 cut(s) 539
CviQI GTAC 2 cut(s) 523, 738
DdeI CTNAG 2 cut(s) 157, 333
DpnI GATC 3 cut(s) 472, 663, 724
DpnII GATC 3 cut(s) 470, 661, 722
DraI TTTAAA 1 cut(s) 393
Eam1104I CTCTTC 1 cut(s) 696
EarI CTCTTC 1 cut(s) 696
Ecl136II GAGCTC 1 cut(s) 640
Eco24I GRGCYC 1 cut(s) 642
Eco53kI GAGCTC 1 cut(s) 640
Eco57I CTGAAG 1 cut(s) 452
EcoICRI GAGCTC 1 cut(s) 640
EcoNI CCTNNNNNAGG 1 cut(s) 434
EcoRII CCWGG 1 cut(s) 64
EcoT38I GRGCYC 1 cut(s) 642
FaeI CATG 1 cut(s) 542
FaiI YATR 6 cut(s) 215, 281, 540, 545, 590, 735
FatI CATG 1 cut(s) 538
FbaI TGATCA 1 cut(s) 661
Fnu4HI GCNGC 1 cut(s) 713
FokI GGATG 2 cut(s) 323, 502
FriOI GRGCYC 1 cut(s) 642
Fsp4HI GCNGC 1 cut(s) 713
FspBI CTAG 2 cut(s) 102, 188
GluI GCNGC 1 cut(s) 713
HapII CCGG 1 cut(s) 5
Hin1II CATG 1 cut(s) 542
HindIII AAGCTT 1 cut(s) 752
HinfI GANTC 4 cut(s) 69, 268, 425, 475
HpaII CCGG 1 cut(s) 5
Hpy188I TCNGA 1 cut(s) 118
Hpy188III TCNNGA 6 cut(s) 29, 365, 401, 479, 518, 673
HpyAV CCTTC 5 cut(s) 364, 430, 476, 480, 636
HpyCH4III ACNGT 2 cut(s) 113, 343
HpyCH4V TGCA 1 cut(s) 493
HpyF3I CTNAG 2 cut(s) 157, 333
Hsp92II CATG 1 cut(s) 542
Ksp22I TGATCA 1 cut(s) 661
Kzo9I GATC 3 cut(s) 470, 661, 722
LmnI GCTCC 3 cut(s) 373, 622, 637
LpnPI CCDG 9 cut(s) 18, 42, 51, 78, 81, 288, 443, 556, 729
Lsp1109I GCAGC 1 cut(s) 699
LweI GCATC 2 cut(s) 449, 480
MaeI CTAG 2 cut(s) 102, 188
MaeIII GTNAC 1 cut(s) 224
MalI GATC 3 cut(s) 472, 663, 724
MboI GATC 3 cut(s) 470, 661, 722
MboII GAAGA 6 cut(s) 191, 405, 445, 469, 704, 713
MflI RGATCY 1 cut(s) 722
MhlI GDGCHC 2 cut(s) 364, 642
MluCI AATT 5 cut(s) 164, 198, 351, 677, 727
MmeI TCCRAC 2 cut(s) 576, 615
MnlI CCTC 6 cut(s) 52, 166, 181, 340, 542, 568
MseI TTAA 5 cut(s) 255, 356, 392, 707, 757
MspI CCGG 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 66
MvaI CCWGG 1 cut(s) 66
NdeII GATC 3 cut(s) 470, 661, 722
NlaIII CATG 1 cut(s) 542
NlaIV GGNNCC 2 cut(s) 40, 624
NmuCI GTSAC 1 cut(s) 224
NspV TTCGAA 1 cut(s) 629
PfeI GAWTC 4 cut(s) 69, 268, 425, 475
PflMI CCANNNNNTGG 1 cut(s) 307
PfoI TCCNGGA 1 cut(s) 64
PkrI GCNGC 1 cut(s) 714
PshBI ATTAAT 1 cut(s) 255
Psp124BI GAGCTC 1 cut(s) 642
Psp6I CCWGG 1 cut(s) 64
PspGI CCWGG 1 cut(s) 64
PspN4I GGNNCC 2 cut(s) 40, 624
PsuI RGATCY 1 cut(s) 722
RsaI GTAC 2 cut(s) 524, 739
RsaNI GTAC 2 cut(s) 523, 738
SacI GAGCTC 1 cut(s) 642
SaqAI TTAA 5 cut(s) 255, 356, 392, 707, 757
SatI GCNGC 1 cut(s) 713
Sau3AI GATC 3 cut(s) 470, 661, 722
ScrFI CCNGG 1 cut(s) 66
SduI GDGCHC 2 cut(s) 364, 642
SfaNI GCATC 2 cut(s) 449, 480
SfuI TTCGAA 1 cut(s) 629
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
Sse9I AATT 5 cut(s) 164, 198, 351, 677, 727
SspI AATATT 1 cut(s) 241
SspMI CTAG 2 cut(s) 102, 188
SstI GAGCTC 1 cut(s) 642
StyD4I CCNGG 1 cut(s) 64
TaaI ACNGT 2 cut(s) 113, 343
TaqI TCGA 6 cut(s) 266, 419, 473, 478, 629, 674
TasI AATT 5 cut(s) 164, 198, 351, 677, 727
TatI WGTACW 1 cut(s) 522
TfiI GAWTC 4 cut(s) 69, 268, 425, 475
Tru1I TTAA 5 cut(s) 255, 356, 392, 707, 757
Tru9I TTAA 5 cut(s) 255, 356, 392, 707, 757
TscAI CASTG 3 cut(s) 229, 348, 652
TseFI GTSAC 1 cut(s) 224
TseI GCWGC 1 cut(s) 712
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 3 cut(s) 273, 405, 705
TspRI CASTG 3 cut(s) 229, 348, 652
Van91I CCANNNNNTGG 1 cut(s) 307
VspI ATTAAT 1 cut(s) 255
XagI CCTNNNNNAGG 1 cut(s) 434
XapI RAATTY 1 cut(s) 351
XspI CTAG 2 cut(s) 102, 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.