Rorug01G0466000
TCP Family

TCP-1/cpn60 chaperonin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
N/A
Physical Location & Seq
Reverse (-)
55869831 .. 55870674
844 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0466000.1

Sequence Viewer

Length: 762 bp
ATGCAGACATTTATGTCTGTGGAAACTGAAAAGTCAGAAGAGATAAGAAGGAAGATCAAATCAAAAGAGCAAGATATGAAAGTGTGGATGGAGAAAAATTGCCTCCCTGCTAATTTGAGGAAAGAAATCATGGCAAATATAAGAGAAAAATTAGAACAAGACAAGCATGCTGACATGGAGAATCTGTTCTCCATTCTTCCCTGGTCAACCAAAAAATCTCTAAAGCGTGTTCTCTGCATGAGTACACTGAGAAAAGTACCAATGCTTGAAGGCATGAATCCGAAAGTTTTGAAAATGATATGTGACTATCTGAAGCCTGTGATATACCCTGAGCATAGCTATGTTGCCAAGGTGGATGAACCAGTTGATCGGATGGTGCTCGTCACAGAAGGAACCATGTGGATCTACTCGTCGAATGCTAGTACTCCATCTAAGATCCACAGGACTGTTGAGAACGGTGACATATACGGAGATGAACAACTTCTGAGTTGGGCGTCGAAGGACATGCAACACGTCTCGTTTGCAACCCTCCTGATCTCAAAAGCAAATGTGAAATGTCACACAAGAGTGGAAGGGTTTGCTATAACAGCCAAGGACTTGAAAGCAGTCGCCACCAAGTGCAAAATGTATTGGAATTACGATGATCCTCGAGAGAAGGAGAGGGTGGCGAGCTCTACCATAGGAACGTCGTTCCGTCGAAACCACAGTAACCCAAATAGGCCAGCTAGTAGGAGGTGCGACCTCGCCAAGGACACGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cpn60_TCP1

Protein Analysis

253

Amino Acids

29.27

Weight (kDa)

9.25

Isoelectric Point (pI)

45.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 13
AclWI GGATC 3 cut(s) 410, 430, 638
AcuI CTGAAG 1 cut(s) 332
AcyI GRCGYC 1 cut(s) 494
AdeI CACNNNGTG 1 cut(s) 618
AfaI GTAC 3 cut(s) 244, 258, 424
AfiI CCNNNNNNNGG 1 cut(s) 748
AflIII ACRYGT 1 cut(s) 511
AgsI TTSAA 3 cut(s) 269, 292, 601
AjiI CACGTC 1 cut(s) 514
AjnI CCWGG 1 cut(s) 200
AleI CACNNNNGTG 1 cut(s) 566
AloI GAACNNNNNNTCC 2 cut(s) 170, 202
AluBI AGCT 3 cut(s) 339, 672, 725
AluI AGCT 3 cut(s) 339, 672, 725
Alw21I GWGCWC 2 cut(s) 381, 674
Alw26I GTCTC 1 cut(s) 520
AlwI GGATC 3 cut(s) 410, 430, 638
Ama87I CYCGRG 1 cut(s) 648
AoxI GGCC 1 cut(s) 719
Asp700I GAANNNNTTC 2 cut(s) 185, 480
AsuHPI GGTGA 1 cut(s) 470
AvaI CYCGRG 1 cut(s) 648
BanII GRGCYC 1 cut(s) 674
Bbv12I GWGCWC 2 cut(s) 381, 674
BccI CCATC 3 cut(s) 82, 367, 436
BcgI CGANNNNNNTGC 2 cut(s) 487, 521
BciT130I CCWGG 1 cut(s) 202
BcoDI GTCTC 1 cut(s) 520
BfaI CTAG 2 cut(s) 420, 726
BmcAI AGTACT 1 cut(s) 424
Bme1390I CCNGG 1 cut(s) 202
BmeT110I CYCGRG 1 cut(s) 648
BmgBI CACGTC 1 cut(s) 514
BmiI GGNNCC 1 cut(s) 394
BmrFI CCNGG 1 cut(s) 202
Bpu10I CCTNAGC 1 cut(s) 330
BsaHI GRCGYC 1 cut(s) 494
BsaJI CCNNGG 4 cut(s) 200, 348, 591, 747
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bsc4I CCNNNNNNNGG 1 cut(s) 748
Bse1I ACTGG 1 cut(s) 362
BseBI CCWGG 1 cut(s) 202
BseDI CCNNGG 4 cut(s) 200, 348, 591, 747
BseGI GGATG 3 cut(s) 93, 361, 378
BseLI CCNNNNNNNGG 1 cut(s) 748
BseMII CTCAG 3 cut(s) 239, 321, 476
BseNI ACTGG 1 cut(s) 362
BshFI GGCC 1 cut(s) 721
BsiHKAI GWGCWC 2 cut(s) 381, 674
BsiHKCI CYCGRG 1 cut(s) 648
BslI CCNNNNNNNGG 1 cut(s) 748
BsmAI GTCTC 1 cut(s) 520
BsmBI CGTCTC 1 cut(s) 520
BsmI GAATGC 1 cut(s) 421
BsnI GGCC 1 cut(s) 721
BsoBI CYCGRG 1 cut(s) 648
Bsp1286I GDGCHC 2 cut(s) 381, 674
Bsp143I GATC 6 cut(s) 54, 367, 402, 435, 534, 643
BspANI GGCC 1 cut(s) 721
BspCNI CTCAG 3 cut(s) 240, 322, 477
BspLI GGNNCC 1 cut(s) 394
BspPI GGATC 3 cut(s) 410, 430, 638
BsrI ACTGG 1 cut(s) 362
BssECI CCNNGG 4 cut(s) 200, 348, 591, 747
BssMI GATC 6 cut(s) 54, 367, 402, 435, 534, 643
BssNI GRCGYC 1 cut(s) 494
BssT1I CCWWGG 3 cut(s) 348, 591, 747
Bst2UI CCWGG 1 cut(s) 202
Bst4CI ACNGT 3 cut(s) 448, 458, 707
Bst6I CTCTTC 1 cut(s) 33
BstACI GRCGYC 1 cut(s) 494
BstC8I GCNNGC 3 cut(s) 168, 670, 723
BstDEI CTNAG 4 cut(s) 248, 330, 432, 485
BstENI CCTNNNNNAGG 1 cut(s) 746
BstF5I GGATG 3 cut(s) 93, 361, 378
BstKTI GATC 6 cut(s) 57, 370, 405, 438, 537, 646
BstMAI GTCTC 1 cut(s) 520
BstMBI GATC 6 cut(s) 54, 367, 402, 435, 534, 643
BstMWI GCNNNNNNNGC 1 cut(s) 587
BstNI CCWGG 1 cut(s) 202
BstNSI RCATGY 2 cut(s) 170, 508
BstSCI CCNGG 1 cut(s) 200
BstX2I RGATCY 2 cut(s) 402, 435
BstYI RGATCY 2 cut(s) 402, 435
BsuRI GGCC 1 cut(s) 721
BtrI CACGTC 1 cut(s) 514
BtsCI GGATG 3 cut(s) 93, 361, 378
BtsIMutI CAGTG 1 cut(s) 245
Cac8I GCNNGC 3 cut(s) 168, 670, 723
CseI GACGC 1 cut(s) 483
Csp6I GTAC 3 cut(s) 243, 257, 423
CviAII CATG 7 cut(s) 130, 167, 175, 238, 274, 397, 505
CviJI RGCY 6 cut(s) 316, 339, 590, 672, 721, 725
CviKI_1 RGCY 6 cut(s) 316, 339, 590, 672, 721, 725
CviQI GTAC 3 cut(s) 243, 257, 423
DdeI CTNAG 4 cut(s) 248, 330, 432, 485
DpnI GATC 6 cut(s) 56, 369, 404, 437, 536, 645
DpnII GATC 6 cut(s) 54, 367, 402, 435, 534, 643
DraIII CACNNNGTG 1 cut(s) 618
DrdI GACNNNNNNGTC 1 cut(s) 13
DseDI GACNNNNNNGTC 1 cut(s) 13
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Ecl136II GAGCTC 1 cut(s) 672
Eco130I CCWWGG 3 cut(s) 348, 591, 747
Eco24I GRGCYC 1 cut(s) 674
Eco53kI GAGCTC 1 cut(s) 672
Eco57I CTGAAG 1 cut(s) 332
Eco88I CYCGRG 1 cut(s) 648
EcoICRI GAGCTC 1 cut(s) 672
EcoNI CCTNNNNNAGG 1 cut(s) 746
EcoRII CCWGG 1 cut(s) 200
EcoT14I CCWWGG 3 cut(s) 348, 591, 747
EcoT38I GRGCYC 1 cut(s) 674
ErhI CCWWGG 3 cut(s) 348, 591, 747
Esp3I CGTCTC 1 cut(s) 520
FaeI CATG 7 cut(s) 133, 170, 178, 241, 277, 400, 508
FatI CATG 7 cut(s) 129, 166, 174, 237, 273, 396, 504
FokI GGATG 3 cut(s) 100, 368, 385
FriOI GRGCYC 1 cut(s) 674
FspBI CTAG 2 cut(s) 420, 726
HaeIII GGCC 1 cut(s) 721
HgaI GACGC 1 cut(s) 483
Hin1I GRCGYC 1 cut(s) 494
Hin1II CATG 7 cut(s) 133, 170, 178, 241, 277, 400, 508
HincII GTYRAC 1 cut(s) 207
HindII GTYRAC 1 cut(s) 207
HinfI GANTC 2 cut(s) 181, 277
HphI GGTGA 1 cut(s) 470
Hpy166II GTNNAC 2 cut(s) 207, 245
Hpy188I TCNGA 5 cut(s) 37, 282, 312, 372, 486
Hpy188III TCNNGA 2 cut(s) 532, 650
Hpy8I GTNNAC 2 cut(s) 207, 245
Hpy99I CGWCG 4 cut(s) 415, 499, 691, 699
HpyAV CCTTC 6 cut(s) 42, 263, 383, 493, 566, 649
HpyCH4III ACNGT 3 cut(s) 448, 458, 707
HpyCH4IV ACGT 2 cut(s) 513, 686
HpyCH4V TGCA 5 cut(s) 4, 237, 508, 524, 621
HpyF10VI GCNNNNNNNGC 1 cut(s) 587
HpyF3I CTNAG 4 cut(s) 248, 330, 432, 485
HpySE526I ACGT 2 cut(s) 513, 686
Hsp92I GRCGYC 1 cut(s) 494
Hsp92II CATG 7 cut(s) 133, 170, 178, 241, 277, 400, 508
Kzo9I GATC 6 cut(s) 54, 367, 402, 435, 534, 643
LpnPI CCDG 9 cut(s) 120, 187, 214, 330, 342, 375, 427, 545, 735
MaeI CTAG 2 cut(s) 420, 726
MaeII ACGT 2 cut(s) 513, 686
MaeIII GTNAC 5 cut(s) 302, 382, 458, 557, 707
MalI GATC 6 cut(s) 56, 369, 404, 437, 536, 645
MboI GATC 6 cut(s) 54, 367, 402, 435, 534, 643
MboII GAAGA 3 cut(s) 50, 64, 188
MflI RGATCY 2 cut(s) 402, 435
MhlI GDGCHC 2 cut(s) 381, 674
MluCI AATT 5 cut(s) 97, 112, 149, 634, 757
MnlI CCTC 7 cut(s) 111, 113, 539, 654, 657, 726, 752
MroXI GAANNNNTTC 2 cut(s) 185, 480
MslI CAYNNNNRTG 2 cut(s) 339, 566
MspR9I CCNGG 1 cut(s) 202
Mva1269I GAATGC 1 cut(s) 421
MvaI CCWGG 1 cut(s) 202
MwoI GCNNNNNNNGC 1 cut(s) 587
NdeII GATC 6 cut(s) 54, 367, 402, 435, 534, 643
NlaIII CATG 7 cut(s) 133, 170, 178, 241, 277, 400, 508
NlaIV GGNNCC 1 cut(s) 394
NmuCI GTSAC 4 cut(s) 302, 382, 458, 557
NspI RCATGY 2 cut(s) 170, 508
OliI CACNNNNGTG 1 cut(s) 566
PaeI GCATGC 1 cut(s) 170
PaeR7I CTCGAG 1 cut(s) 648
PctI GAATGC 1 cut(s) 421
PdmI GAANNNNTTC 2 cut(s) 185, 480
PfeI GAWTC 2 cut(s) 181, 277
Psp124BI GAGCTC 1 cut(s) 674
Psp6I CCWGG 1 cut(s) 200
PspGI CCWGG 1 cut(s) 200
PspN4I GGNNCC 1 cut(s) 394
PsuI RGATCY 2 cut(s) 402, 435
RsaI GTAC 3 cut(s) 244, 258, 424
RsaNI GTAC 3 cut(s) 243, 257, 423
RseI CAYNNNNRTG 2 cut(s) 339, 566
SacI GAGCTC 1 cut(s) 674
Sau3AI GATC 6 cut(s) 54, 367, 402, 435, 534, 643
ScaI AGTACT 1 cut(s) 424
ScrFI CCNGG 1 cut(s) 202
SduI GDGCHC 2 cut(s) 381, 674
SetI ASST 8 cut(s) 341, 354, 516, 674, 689, 727, 737, 744
Sfr274I CTCGAG 1 cut(s) 648
SlaI CTCGAG 1 cut(s) 648
SmiMI CAYNNNNRTG 2 cut(s) 339, 566
SmlI CTYRAG 1 cut(s) 648
SmoI CTYRAG 1 cut(s) 648
SphI GCATGC 1 cut(s) 170
Sse9I AATT 5 cut(s) 97, 112, 149, 634, 757
SspMI CTAG 2 cut(s) 420, 726
SstI GAGCTC 1 cut(s) 674
StyD4I CCNGG 1 cut(s) 200
StyI CCWWGG 3 cut(s) 348, 591, 747
TaaI ACNGT 3 cut(s) 448, 458, 707
TaiI ACGT 2 cut(s) 516, 689
TaqI TCGA 4 cut(s) 413, 497, 649, 697
TasI AATT 5 cut(s) 97, 112, 149, 634, 757
TatI WGTACW 2 cut(s) 242, 422
TfiI GAWTC 2 cut(s) 181, 277
TscAI CASTG 1 cut(s) 252
TseFI GTSAC 4 cut(s) 302, 382, 458, 557
Tsp45I GTSAC 4 cut(s) 302, 382, 458, 557
TspDTI ATGAA 4 cut(s) 92, 290, 372, 489
TspGWI ACGGA 2 cut(s) 483, 683
TspRI CASTG 1 cut(s) 252
XagI CCTNNNNNAGG 1 cut(s) 746
XceI RCATGY 2 cut(s) 170, 508
XhoI CTCGAG 1 cut(s) 648
XmnI GAANNNNTTC 2 cut(s) 185, 480
XspI CTAG 2 cut(s) 420, 726
ZrmI AGTACT 1 cut(s) 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.