Rorug02G0486000

divergent subfamily of APPLE domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
N/A
Physical Location & Seq
Reverse (-)
61566254 .. 61566685
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0486000.1

Sequence Viewer

Length: 432 bp
ATGGAACATTTTGTGGAACGGCAATGGCTGCAGGGTCTCCAAATTAATGCTCAGGCGCCAGTTTTACACCATTTACTCTTCGCAGATGATAGTTTTTTGTTTGGGACTGCAACTGAGGCTGAGTGTCAGCAGATTCGAAATATTCTGCATACATATGAGATTGCTTCAGGACAACGAGTAAACTTACAAAAGAGTGAAGTGGCCTTCAGTCGGGGAATGGATATGCGTAGACAAGAGGTTCTTGCGAGTATGTTGGGAGTGAAAAGGGTAGATAAGCATGATCGTTATCTGGGGCTACCAACACATGTAGGTAGGAAAAAATCAGCTGCGTTCAACTATCTGAAGGAGAAACTCACGAAGAAGGTGGTGAGCTGGAAAGCTAAGTTACTTAGTGGTGTCGGAAAGGAAATCTTAATAAAGGCGGTGGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin GUB_WAK_bind PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

143

Amino Acids

16.24

Weight (kDa)

9.79

Isoelectric Point (pI)

37.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 55
AccI GTMKAC 1 cut(s) 229
AciI CCGC 1 cut(s) 422
AcuI CTGAAG 3 cut(s) 150, 190, 362
AcyI GRCGYC 1 cut(s) 56
AfiI CCNNNNNNNGG 1 cut(s) 210
AflIII ACRYGT 1 cut(s) 304
AgsI TTSAA 1 cut(s) 334
AluBI AGCT 3 cut(s) 326, 372, 380
AluI AGCT 3 cut(s) 326, 372, 380
Alw26I GTCTC 1 cut(s) 41
AoxI GGCC 1 cut(s) 201
ApeKI GCWGC 2 cut(s) 28, 326
AseI ATTAAT 1 cut(s) 45
AspLEI GCGC 1 cut(s) 58
AsuHPI GGTGA 1 cut(s) 379
AsuII TTCGAA 1 cut(s) 136
BanI GGYRCC 1 cut(s) 55
BbvI GCAGC 2 cut(s) 15, 313
BceAI ACGGC 1 cut(s) 35
BcoDI GTCTC 1 cut(s) 41
BfmI CTRYAG 1 cut(s) 29
BfoI RGCGCY 1 cut(s) 59
BisI GCNGC 2 cut(s) 29, 327
BlsI GCNGC 2 cut(s) 30, 328
BmiI GGNNCC 1 cut(s) 57
Bpu10I CCTNAGC 1 cut(s) 51
Bpu14I TTCGAA 1 cut(s) 136
BsaBI GATNNNNATC 1 cut(s) 285
BsaHI GRCGYC 1 cut(s) 56
BsaI GGTCTC 1 cut(s) 41
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse1I ACTGG 1 cut(s) 59
Bse3DI GCAATG 1 cut(s) 29
Bse8I GATNNNNATC 1 cut(s) 285
BseJI GATNNNNATC 1 cut(s) 285
BseLI CCNNNNNNNGG 1 cut(s) 210
BseMI GCAATG 1 cut(s) 29
BseMII CTCAG 3 cut(s) 65, 105, 111
BseNI ACTGG 1 cut(s) 59
BseXI GCAGC 2 cut(s) 15, 313
BshFI GGCC 1 cut(s) 203
BshNI GGYRCC 1 cut(s) 55
BslFI GGGAC 1 cut(s) 118
BslI CCNNNNNNNGG 1 cut(s) 210
BsmAI GTCTC 1 cut(s) 41
BsmFI GGGAC 1 cut(s) 118
BsnI GGCC 1 cut(s) 203
Bso31I GGTCTC 1 cut(s) 41
Bsp119I TTCGAA 1 cut(s) 136
Bsp143I GATC 1 cut(s) 280
BspACI CCGC 1 cut(s) 422
BspANI GGCC 1 cut(s) 203
BspCNI CTCAG 3 cut(s) 64, 106, 112
BspLI GGNNCC 1 cut(s) 57
BspMAI CTGCAG 1 cut(s) 33
BspT104I TTCGAA 1 cut(s) 136
BspT107I GGYRCC 1 cut(s) 55
BspTNI GGTCTC 1 cut(s) 41
BsrDI GCAATG 1 cut(s) 29
BsrI ACTGG 1 cut(s) 59
BssMI GATC 1 cut(s) 280
BssNI GRCGYC 1 cut(s) 56
Bst6I CTCTTC 1 cut(s) 83
BstACI GRCGYC 1 cut(s) 56
BstAPI GCANNNNNTGC 1 cut(s) 28
BstBI TTCGAA 1 cut(s) 136
BstDEI CTNAG 5 cut(s) 51, 114, 120, 381, 389
BstH2I RGCGCY 1 cut(s) 59
BstHHI GCGC 1 cut(s) 58
BstKTI GATC 1 cut(s) 283
BstMAI GTCTC 1 cut(s) 41
BstMBI GATC 1 cut(s) 280
BstMWI GCNNNNNNNGC 2 cut(s) 28, 116
BstNSI RCATGY 1 cut(s) 308
BstSFI CTRYAG 1 cut(s) 29
BstV1I GCAGC 2 cut(s) 15, 313
BsuRI GGCC 1 cut(s) 203
CfoI GCGC 1 cut(s) 58
CviAII CATG 2 cut(s) 278, 305
CviJI RGCY 7 cut(s) 28, 119, 203, 295, 326, 372, 380
CviKI_1 RGCY 7 cut(s) 28, 119, 203, 295, 326, 372, 380
DdeI CTNAG 5 cut(s) 51, 114, 120, 381, 389
DinI GGCGCC 1 cut(s) 57
DpnI GATC 1 cut(s) 282
DpnII GATC 1 cut(s) 280
Eam1104I CTCTTC 1 cut(s) 83
EarI CTCTTC 1 cut(s) 83
Eco31I GGTCTC 1 cut(s) 41
Eco57I CTGAAG 3 cut(s) 150, 190, 362
EgeI GGCGCC 1 cut(s) 57
EheI GGCGCC 1 cut(s) 57
FaeI CATG 2 cut(s) 281, 308
FaiI YATR 7 cut(s) 150, 154, 156, 224, 251, 279, 306
FalI AAGNNNNNCTT 4 cut(s) 225, 257, 395, 427
FaqI GGGAC 1 cut(s) 118
FatI CATG 2 cut(s) 277, 304
FauNDI CATATG 1 cut(s) 154
FblI GTMKAC 1 cut(s) 229
Fnu4HI GCNGC 2 cut(s) 29, 327
Fsp4HI GCNGC 2 cut(s) 29, 327
GlaI GCGC 1 cut(s) 57
GluI GCNGC 2 cut(s) 29, 327
HaeII RGCGCY 1 cut(s) 59
HaeIII GGCC 1 cut(s) 203
HhaI GCGC 1 cut(s) 58
Hin1I GRCGYC 1 cut(s) 56
Hin1II CATG 2 cut(s) 281, 308
Hin6I GCGC 1 cut(s) 56
HinP1I GCGC 1 cut(s) 56
HinfI GANTC 1 cut(s) 133
HphI GGTGA 1 cut(s) 379
Hpy166II GTNNAC 2 cut(s) 181, 230
Hpy188I TCNGA 2 cut(s) 342, 401
Hpy188III TCNNGA 2 cut(s) 168, 355
Hpy8I GTNNAC 2 cut(s) 181, 230
HpyAV CCTTC 3 cut(s) 214, 337, 355
HpyCH4V TGCA 3 cut(s) 31, 110, 148
HpyF10VI GCNNNNNNNGC 2 cut(s) 28, 116
HpyF3I CTNAG 5 cut(s) 51, 114, 120, 381, 389
Hsp92I GRCGYC 1 cut(s) 56
Hsp92II CATG 2 cut(s) 281, 308
HspAI GCGC 1 cut(s) 56
KasI GGCGCC 1 cut(s) 55
Kzo9I GATC 1 cut(s) 280
LpnPI CCDG 6 cut(s) 17, 38, 72, 153, 275, 358
Lsp1109I GCAGC 2 cut(s) 15, 313
MaeIII GTNAC 1 cut(s) 384
MalI GATC 1 cut(s) 282
MboI GATC 1 cut(s) 280
MboII GAAGA 2 cut(s) 70, 370
MluCI AATT 1 cut(s) 42
Mly113I GGCGCC 1 cut(s) 56
MmeI TCCRAC 1 cut(s) 379
MnlI CCTC 2 cut(s) 109, 229
MseI TTAA 2 cut(s) 45, 413
MslI CAYNNNNRTG 1 cut(s) 153
MspA1I CMGCKG 1 cut(s) 326
MwoI GCNNNNNNNGC 2 cut(s) 28, 116
NarI GGCGCC 1 cut(s) 56
NdeI CATATG 1 cut(s) 154
NdeII GATC 1 cut(s) 280
NlaIII CATG 2 cut(s) 281, 308
NlaIV GGNNCC 1 cut(s) 57
NspI RCATGY 1 cut(s) 308
NspV TTCGAA 1 cut(s) 136
PciI ACATGT 1 cut(s) 304
PfeI GAWTC 1 cut(s) 133
PkrI GCNGC 2 cut(s) 30, 328
PluTI GGCGCC 1 cut(s) 59
PscI ACATGT 1 cut(s) 304
PshBI ATTAAT 1 cut(s) 45
PspN4I GGNNCC 1 cut(s) 57
PstI CTGCAG 1 cut(s) 33
PvuII CAGCTG 1 cut(s) 326
RseI CAYNNNNRTG 1 cut(s) 153
SaqAI TTAA 2 cut(s) 45, 413
SatI GCNGC 2 cut(s) 29, 327
Sau3AI GATC 1 cut(s) 280
SetI ASST 6 cut(s) 240, 313, 328, 366, 374, 382
SfcI CTRYAG 1 cut(s) 29
SfoI GGCGCC 1 cut(s) 57
SfuI TTCGAA 1 cut(s) 136
SmiMI CAYNNNNRTG 1 cut(s) 153
Sse9I AATT 1 cut(s) 42
SsiI CCGC 1 cut(s) 422
SspDI GGCGCC 1 cut(s) 55
SspI AATATT 1 cut(s) 142
TaqI TCGA 1 cut(s) 136
TasI AATT 1 cut(s) 42
TfiI GAWTC 1 cut(s) 133
Tru1I TTAA 2 cut(s) 45, 413
Tru9I TTAA 2 cut(s) 45, 413
TseI GCWGC 2 cut(s) 28, 326
VspI ATTAAT 1 cut(s) 45
XceI RCATGY 1 cut(s) 308
XmiI GTMKAC 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.