Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

64591680 .. 64595288

Gene Structure 3609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0514800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGCAAATCTCTCTGACCACTACACCCTCCAAAGCCCCTCTAATCTTCCCACTCCACCACCCCATTGGAAAACCCCACACAACTTCCCTTCAAACCCTCTCCAATCCTCTCAATTCCCTCAAAGCCTCCTCGCCTTATCTATCTGCAGTGGGCCGGGCTATCGAGGACGACGAGTACCGGATAGCCCGGAACCAGGTTCTCCGAAAAGGTGTGGACTTGGAGGGCTACTCCATTGAGGGCGTCTCCGTTGGGGGTCATGAGACTTGCATCATTATTCCGGAGTTTAAGTGTGCTTTCGATATCGGCAGGTGTCCCTCCAGAGCCATTCATCAGAATTCTCTCTTCATCACTCATGCCCATCTTGACCACATTGGTGGGCTGCCGATGTATGTAGCCAGCCGTGGTTTGTACAACTTAAAGCCTCCGACTGTGTTTGTGCCTCCTTGTATTAAAGAGGATGTCGAGAAGCTGATGGACATTCACAGGAGCATGGGACATGTGGAGCTGGAACTTGAATTGGTTGCATTGGATGTGGGTGAAACATATGAGCTGCGGAATAACCTTGTTGTCCGGCCATTTAGGACTCAGCATGCCATACCAAGCCAGGGTTATGTTATTTACTCGGTTAGAAAAAAACTGAAGAAGCAGTACATGCATCTGAAAGGGAAACAGATTGAGAAATTGAAAAAGTCTGGTACTGAGATTACAGACACTATATTGTCACCAGAGGTGGCCTTCACAGGGGATACAACATCGGAGTATATGCTGGATCCACGTAATGCTGATGCCTTGAGGGCAAAGATTCTCATAACTGAGGCAACTTTTCTGGATGAAGGATTCAGTATTGAGGATGCACGACAACATGGTCATACGCATATAAATGAGATCATTGAAAATGCTCAGTGGATTAGAAATAAGGCAATTTTGTTGACCCATTTCTCCTCCCGCTACCATTTAGAGGACATTCGTCAAGCTGTATCAAGGTTGCAGTCTAAGGTGTCAGCGAAAGTGGTCCCTCTTACAGAAGGTTTCAAATCCATGCACACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

349

Amino Acids

39.21

Weight (kDa)

8.24

Isoelectric Point (pI)

46.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Anti-Pycsar_Apyc1	PF23023	112 - 317	9e-08	Anti-Pycsar protein Apyc1
Lactamase_B_2	PF12706	114 - 313	1.4e-10	Beta-lactamase superfamily domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	297
AasI	GACNNNNNNGTC	1 cut(s)	864
Acc36I	ACCTGC	1 cut(s)	297
AccIII	TCCGGA	1 cut(s)	277
AciI	CCGC	2 cut(s)	553, 946
AclWI	GGATC	2 cut(s)	764, 777
AcoI	YGGCCR	1 cut(s)	572
AcsI	RAATTY	1 cut(s)	334
AcuI	CTGAAG	1 cut(s)	659
AcyI	GRCGYC	1 cut(s)	240
AfaI	GTAC	4 cut(s)	176, 410, 650, 697
AfiI	CCNNNNNNNGG	4 cut(s)	193, 605, 741, 958
AflIII	ACRYGT	1 cut(s)	496
AgsI	TTSAA	5 cut(s)	92, 515, 685, 893, 1033
AjnI	CCWGG	2 cut(s)	192, 603
AleI	CACNNNNGTG	1 cut(s)	372
AluBI	AGCT	4 cut(s)	469, 505, 550, 974
AluI	AGCT	4 cut(s)	469, 505, 550, 974
Alw26I	GTCTC	2 cut(s)	247, 254
AlwI	GGATC	2 cut(s)	764, 777
Aor13HI	TCCGGA	1 cut(s)	277
AoxI	GGCC	3 cut(s)	151, 572, 732
ApeKI	GCWGC	2 cut(s)	379, 550
ApoI	RAATTY	1 cut(s)	334
AspS9I	GGNCC	2 cut(s)	151, 1012
AsuC2I	CCSGG	2 cut(s)	155, 187
AsuHPI	GGTGA	2 cut(s)	548, 714
AvaII	GGWCC	1 cut(s)	1012
BamHI	GGATCC	1 cut(s)	769
BarI	GAAGNNNNNNTAC	2 cut(s)	632, 664
BbvI	GCAGC	2 cut(s)	366, 537
BccI	CCATC	2 cut(s)	366, 466
BceAI	ACGGC	1 cut(s)	384
BciT130I	CCWGG	2 cut(s)	194, 605
BciVI	GTATCC	1 cut(s)	739
BcnI	CCSGG	2 cut(s)	155, 187
BcoDI	GTCTC	2 cut(s)	247, 254
BfmI	CTRYAG	1 cut(s)	144
BfuAI	ACCTGC	1 cut(s)	297
BfuI	GTATCC	1 cut(s)	739
BglI	GCCNNNNNGGC	1 cut(s)	794
BisI	GCNGC	2 cut(s)	380, 551
BlsI	GCNGC	2 cut(s)	381, 552
Bme1390I	CCNGG	4 cut(s)	155, 187, 194, 605
Bme18I	GGWCC	1 cut(s)	1012
BmgT120I	GGNCC	2 cut(s)	151, 1012
BmiI	GGNNCC	3 cut(s)	191, 771, 1014
BmrFI	CCNGG	4 cut(s)	155, 187, 194, 605
BmsI	GCATC	4 cut(s)	276, 664, 775, 841
BoxI	GACNNNNGTC	1 cut(s)	966
BplI	GAGNNNNNCTC	4 cut(s)	212, 244, 227, 259
BpmI	CTGGAG	1 cut(s)	301
BpuEI	CTTGAG	1 cut(s)	811
BpuMI	CCSGG	2 cut(s)	155, 187
BsaAI	YACGTR	1 cut(s)	776
BsaHI	GRCGYC	1 cut(s)	240
BsaJI	CCNNGG	2 cut(s)	400, 604
BsaWI	WCCGGW	2 cut(s)	177, 277
BsaXI	ACNNNNNCTCC	2 cut(s)	272, 302
Bsc4I	CCNNNNNNNGG	4 cut(s)	193, 605, 741, 958
BseAI	TCCGGA	1 cut(s)	277
BseBI	CCWGG	2 cut(s)	194, 605
BseDI	CCNNGG	2 cut(s)	400, 604
BseGI	GGATG	4 cut(s)	463, 535, 835, 856
BseLI	CCNNNNNNNGG	4 cut(s)	193, 605, 741, 958
BseMII	CTCAG	4 cut(s)	599, 690, 804, 914
BseRI	GAGGAG	2 cut(s)	118, 931
BseXI	GCAGC	2 cut(s)	366, 537
BshFI	GGCC	3 cut(s)	153, 574, 734
BsiSI	CCGG	5 cut(s)	154, 178, 187, 278, 571
BslFI	GGGAC	3 cut(s)	297, 507, 998
BslI	CCNNNNNNNGG	4 cut(s)	193, 605, 741, 958
BsmAI	GTCTC	2 cut(s)	247, 254
BsmBI	CGTCTC	1 cut(s)	247
BsmFI	GGGAC	3 cut(s)	297, 507, 998
BsnI	GGCC	3 cut(s)	153, 574, 734
Bsp13I	TCCGGA	1 cut(s)	277
Bsp1407I	TGTACA	1 cut(s)	408
Bsp143I	GATC	2 cut(s)	769, 885
BspACI	CCGC	2 cut(s)	553, 946
BspANI	GGCC	3 cut(s)	153, 574, 734
BspCNI	CTCAG	4 cut(s)	598, 691, 805, 913
BspEI	TCCGGA	1 cut(s)	277
BspHI	TCATGA	1 cut(s)	256
BspLI	GGNNCC	3 cut(s)	191, 771, 1014
BspMAI	CTGCAG	1 cut(s)	148
BspMI	ACCTGC	1 cut(s)	297
BspPI	GGATC	2 cut(s)	764, 777
BsrGI	TGTACA	1 cut(s)	408
BssECI	CCNNGG	2 cut(s)	400, 604
BssMI	GATC	2 cut(s)	769, 885
BssNI	GRCGYC	1 cut(s)	240
Bst2UI	CCWGG	2 cut(s)	194, 605
Bst4CI	ACNGT	1 cut(s)	430
Bst6I	CTCTTC	1 cut(s)	347
BstACI	GRCGYC	1 cut(s)	240
BstAPI	GCANNNNNTGC	1 cut(s)	652
BstAUI	TGTACA	1 cut(s)	408
BstBAI	YACGTR	1 cut(s)	776
BstC8I	GCNNGC	2 cut(s)	397, 591
BstDEI	CTNAG	6 cut(s)	585, 699, 813, 900, 993, 1047
BstDSI	CCRYGG	1 cut(s)	400
BstF5I	GGATG	4 cut(s)	463, 535, 835, 856
BstKTI	GATC	2 cut(s)	772, 888
BstMAI	GTCTC	2 cut(s)	247, 254
BstMBI	GATC	2 cut(s)	769, 885
BstMWI	GCNNNNNNNGC	2 cut(s)	652, 794
BstNI	CCWGG	2 cut(s)	194, 605
BstNSI	RCATGY	3 cut(s)	500, 593, 655
BstPAI	GACNNNNGTC	1 cut(s)	966
BstSCI	CCNGG	4 cut(s)	153, 185, 192, 603
BstSFI	CTRYAG	1 cut(s)	144
BstV1I	GCAGC	2 cut(s)	366, 537
BstX2I	RGATCY	1 cut(s)	769
BstXI	CCANNNNNNTGG	2 cut(s)	65, 374
BstYI	RGATCY	1 cut(s)	769
BsuI	GTATCC	1 cut(s)	739
BsuRI	GGCC	3 cut(s)	153, 574, 734
BtgI	CCRYGG	1 cut(s)	400
BtsCI	GGATG	4 cut(s)	463, 535, 835, 856
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	2 cut(s)	153, 908
BveI	ACCTGC	1 cut(s)	297
Cac8I	GCNNGC	2 cut(s)	397, 591
CciI	TCATGA	1 cut(s)	256
Cfr13I	GGNCC	2 cut(s)	151, 1012
CseI	GACGC	1 cut(s)	229
CsiI	ACCWGGT	1 cut(s)	192
Csp6I	GTAC	4 cut(s)	175, 409, 649, 696
CviAII	CATG	8 cut(s)	257, 353, 490, 497, 590, 652, 863, 1039
CviQI	GTAC	4 cut(s)	175, 409, 649, 696
DdeI	CTNAG	6 cut(s)	585, 699, 813, 900, 993, 1047
DpnI	GATC	2 cut(s)	771, 887
DpnII	GATC	2 cut(s)	769, 885
DrdI	GACNNNNNNGTC	1 cut(s)	864
DseDI	GACNNNNNNGTC	1 cut(s)	864
EaeI	YGGCCR	1 cut(s)	572
Eam1104I	CTCTTC	1 cut(s)	347
EarI	CTCTTC	1 cut(s)	347
Eco32I	GATATC	1 cut(s)	301
Eco47I	GGWCC	1 cut(s)	1012
Eco57I	CTGAAG	1 cut(s)	659
EcoRI	GAATTC	1 cut(s)	334
EcoRII	CCWGG	2 cut(s)	192, 603
EcoRV	GATATC	1 cut(s)	301
EcoT22I	ATGCAT	1 cut(s)	657
Esp3I	CGTCTC	1 cut(s)	247
FaeI	CATG	8 cut(s)	260, 356, 493, 500, 593, 655, 866, 1042
FaqI	GGGAC	3 cut(s)	297, 507, 998
FatI	CATG	8 cut(s)	256, 352, 489, 496, 589, 651, 862, 1038
FauI	CCCGC	1 cut(s)	953
FauNDI	CATATG	1 cut(s)	544
Fnu4HI	GCNGC	2 cut(s)	380, 551
FokI	GGATG	4 cut(s)	470, 542, 842, 863
Fsp4HI	GCNGC	2 cut(s)	380, 551
GluI	GCNGC	2 cut(s)	380, 551
GsuI	CTGGAG	1 cut(s)	301
HaeIII	GGCC	3 cut(s)	153, 574, 734
HapII	CCGG	5 cut(s)	154, 178, 187, 278, 571
HgaI	GACGC	1 cut(s)	229
Hin1I	GRCGYC	1 cut(s)	240
Hin1II	CATG	8 cut(s)	260, 356, 493, 500, 593, 655, 866, 1042
HincII	GTYRAC	1 cut(s)	930
HindII	GTYRAC	1 cut(s)	930
HinfI	GANTC	3 cut(s)	583, 802, 837
HpaII	CCGG	5 cut(s)	154, 178, 187, 278, 571
HphI	GGTGA	2 cut(s)	548, 714
Hpy166II	GTNNAC	2 cut(s)	214, 930
Hpy188I	TCNGA	6 cut(s)	15, 203, 333, 426, 660, 757
Hpy188III	TCNNGA	6 cut(s)	257, 278, 318, 362, 463, 827
Hpy8I	GTNNAC	2 cut(s)	214, 930
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	4 cut(s)	98, 745, 827, 1019
HpyCH4III	ACNGT	1 cut(s)	430
HpyCH4IV	ACGT	1 cut(s)	775
HpyCH4V	TGCA	8 cut(s)	4, 146, 267, 524, 655, 854, 988, 1042
HpyF10VI	GCNNNNNNNGC	2 cut(s)	652, 794
HpyF3I	CTNAG	6 cut(s)	585, 699, 813, 900, 993, 1047
HpySE526I	ACGT	1 cut(s)	775
Hsp92I	GRCGYC	1 cut(s)	240
Hsp92II	CATG	8 cut(s)	260, 356, 493, 500, 593, 655, 866, 1042
Kpn2I	TCCGGA	1 cut(s)	277
Kzo9I	GATC	2 cut(s)	769, 885
LmnI	GCTCC	2 cut(s)	486, 502
Lsp1109I	GCAGC	2 cut(s)	366, 537
LweI	GCATC	4 cut(s)	276, 664, 775, 841
MabI	ACCWGGT	1 cut(s)	192
MaeII	ACGT	1 cut(s)	775
MaeIII	GTNAC	1 cut(s)	720
MalI	GATC	2 cut(s)	771, 887
MboI	GATC	2 cut(s)	769, 885
MboII	GAAGA	3 cut(s)	37, 334, 652
MflI	RGATCY	1 cut(s)	769
MluCI	AATT	5 cut(s)	112, 334, 515, 680, 921
MlyI	GAGTC	1 cut(s)	577
MmeI	TCCRAC	1 cut(s)	449
Mph1103I	ATGCAT	1 cut(s)	657
MroI	TCCGGA	1 cut(s)	277
MseI	TTAA	3 cut(s)	285, 416, 450
MslI	CAYNNNNRTG	2 cut(s)	372, 879
MspI	CCGG	5 cut(s)	154, 178, 187, 278, 571
MspR9I	CCNGG	4 cut(s)	155, 187, 194, 605
MvaI	CCWGG	2 cut(s)	194, 605
MwoI	GCNNNNNNNGC	2 cut(s)	652, 794
NciI	CCSGG	2 cut(s)	155, 187
NdeI	CATATG	1 cut(s)	544
NdeII	GATC	2 cut(s)	769, 885
NlaIII	CATG	8 cut(s)	260, 356, 493, 500, 593, 655, 866, 1042
NlaIV	GGNNCC	3 cut(s)	191, 771, 1014
NmuCI	GTSAC	1 cut(s)	720
NsiI	ATGCAT	1 cut(s)	657
NspI	RCATGY	3 cut(s)	500, 593, 655
OliI	CACNNNNGTG	1 cut(s)	372
PaeI	GCATGC	1 cut(s)	593
PagI	TCATGA	1 cut(s)	256
PaqCI	CACCTGC	1 cut(s)	297
PciI	ACATGT	1 cut(s)	496
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PfeI	GAWTC	2 cut(s)	802, 837
PkrI	GCNGC	2 cut(s)	381, 552
PleI	GAGTC	1 cut(s)	577
PpsI	GAGTC	1 cut(s)	577
Ppu21I	YACGTR	1 cut(s)	776
PscI	ACATGT	1 cut(s)	496
PshAI	GACNNNNGTC	1 cut(s)	966
Psp6I	CCWGG	2 cut(s)	192, 603
PspGI	CCWGG	2 cut(s)	192, 603
PspN4I	GGNNCC	3 cut(s)	191, 771, 1014
PspPI	GGNCC	2 cut(s)	151, 1012
PstI	CTGCAG	1 cut(s)	148
PsuI	RGATCY	1 cut(s)	769
RsaI	GTAC	4 cut(s)	176, 410, 650, 697
RsaNI	GTAC	4 cut(s)	175, 409, 649, 696
RseI	CAYNNNNRTG	2 cut(s)	372, 879
SaqAI	TTAA	3 cut(s)	285, 416, 450
SatI	GCNGC	2 cut(s)	380, 551
Sau3AI	GATC	2 cut(s)	769, 885
Sau96I	GGNCC	2 cut(s)	151, 1012
SchI	GAGTC	1 cut(s)	577
ScrFI	CCNGG	4 cut(s)	155, 187, 194, 605
SexAI	ACCWGGT	1 cut(s)	192
SfaNI	GCATC	4 cut(s)	276, 664, 775, 841
SfcI	CTRYAG	1 cut(s)	144
SinI	GGWCC	1 cut(s)	1012
SmiMI	CAYNNNNRTG	2 cut(s)	372, 879
SmlI	CTYRAG	1 cut(s)	790
SmoI	CTYRAG	1 cut(s)	790
SphI	GCATGC	1 cut(s)	593
Sse9I	AATT	5 cut(s)	112, 334, 515, 680, 921
SsiI	CCGC	2 cut(s)	553, 946
StyD4I	CCNGG	4 cut(s)	153, 185, 192, 603
TaaI	ACNGT	1 cut(s)	430
TaiI	ACGT	1 cut(s)	778
TaqI	TCGA	3 cut(s)	162, 297, 462
TasI	AATT	5 cut(s)	112, 334, 515, 680, 921
TatI	WGTACW	2 cut(s)	408, 648
TfiI	GAWTC	2 cut(s)	802, 837
Tru1I	TTAA	3 cut(s)	285, 416, 450
Tru9I	TTAA	3 cut(s)	285, 416, 450
TscAI	CASTG	2 cut(s)	153, 908
TseFI	GTSAC	1 cut(s)	720
TseI	GCWGC	2 cut(s)	379, 550
Tsp45I	GTSAC	1 cut(s)	720
TspDTI	ATGAA	3 cut(s)	317, 334, 846
TspGWI	ACGGA	1 cut(s)	235
TspRI	CASTG	2 cut(s)	153, 908
VpaK11BI	GGWCC	1 cut(s)	1012
XapI	RAATTY	1 cut(s)	334
XceI	RCATGY	3 cut(s)	500, 593, 655
XcmI	CCANNNNNNNNNTGG	1 cut(s)	62
Zsp2I	ATGCAT	1 cut(s)	657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.