Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

64664820 .. 64665806

Gene Structure 987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0515700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGCGGAAGAGATGGCGGCACGTTTGTCAGCAGCGCTAGCTTTAACGGAGGCAGCAGTGGTGTATTTTGGATCGCTGGGTTCGGCAGCGGTGGCAGAAGATGGATACTATCTGGTGGGTCGAATGTTATCCAAGAAACCTAATGATGAGAAGAGCCTGCCGGGTTTGATGGCGACCTTCTGGGGGATGCAGAACAGGTTGGTAATCATGGCTCACGAAGGAGACAGGTTTGTTCTCCGCTTCAAGATCCGTGAGGAATGCAATCGTATTATTCATGGTGGGCCGTGGCATTTTGGGGGCAGGATGCTTGTGCTTGGGGAGTATAATGGTCTGAGTGTTGTGGAGGCGGTGCCATTGCATATGGTGGAGACTTGGGTGGGAATCAAAGGGCTACATCCACGTCTGAGAACGGAGGAAACCCTAATTCTCATAAGATCTTCAATGGGCAGTTTTCTGAAGGCGGACACACTACCGCTGCAGCGTGGGGCGGCGGAACAGAAGTTCTGGGGCCAGATTGATGTCAGGCGGCGTCTATGGACTACTCGAGGATTCACTTTTAGGGCTGGGATCTCGGCGGAGGTGCAGATCCGTTATGAGAAGTTTAAAGGCTTATGTAGGGACTGCGGGCAGTTTTCTCATGAAGCGGAAGGCTGTGATAAGTTTCTGATGATCCAGCGAGAGAAGCAGGTTCCGAAGGTGGCCCTGGAAATGGCGGCACCGTGCTTGGGGGCGTCGTCCTCTGGTTTGCTTGGCAAGGGGTCGCCGACGTCTCGGGGAAAGGAGAAACAGGTGTTGGAAGTGGCTGCAACAAAGGTTGCGACCCCTGGTGGAGACAAGGTGAAAGGGCAGAGTAGCCCCGTGGTGGGTGGCCTAGATTTGAGTCGTTTGTTTAAGACTGTTGATTTGGAAGCTATTCCAAGTTGGAATTCTGTTGTTACCTCCAGGGGAACAGTGGAACCTCCATCGGGGGTGGAATTGGTGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

328

Amino Acids

35.85

Weight (kDa)

9.16

Isoelectric Point (pI)

31.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	36 - 107	9.8e-10	Domain of unknown function (DUF4283)
zf-CCHC_4	PF14392	172 - 220	8.3e-07	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	770
Acc36I	ACCTGC	1 cut(s)	676
AccB1I	GGYRCC	2 cut(s)	349, 715
AclWI	GGATC	5 cut(s)	79, 241, 575, 580, 664
AcsI	RAATTY	1 cut(s)	925
AcuI	CTGAAG	1 cut(s)	476
AcyI	GRCGYC	3 cut(s)	529, 731, 767
AfeI	AGCGCT	1 cut(s)	36
AfiI	CCNNNNNNNGG	6 cut(s)	183, 709, 725, 862, 863, 965
AgsI	TTSAA	2 cut(s)	244, 441
AjiI	CACGTC	1 cut(s)	401
AjnI	CCWGG	3 cut(s)	702, 823, 941
AjuI	GAANNNNNNNTTGG	4 cut(s)	776, 808, 910, 942
AloI	GAACNNNNNNTCC	2 cut(s)	485, 517
AluBI	AGCT	2 cut(s)	41, 911
AluI	AGCT	2 cut(s)	41, 911
Alw26I	GTCTC	4 cut(s)	216, 362, 774, 825
AlwI	GGATC	5 cut(s)	79, 241, 575, 580, 664
Ama87I	CYCGRG	2 cut(s)	543, 771
Aor51HI	AGCGCT	1 cut(s)	36
AoxI	GGCC	4 cut(s)	281, 508, 699, 868
ApeKI	GCWGC	6 cut(s)	32, 53, 86, 475, 478, 803
ApoI	RAATTY	1 cut(s)	925
ArsI	GACNNNNNNTTYG	2 cut(s)	886, 918
Asp700I	GAANNNNTTC	1 cut(s)	912
AspLEI	GCGC	1 cut(s)	37
AspS9I	GGNCC	3 cut(s)	281, 508, 700
AsuC2I	CCSGG	1 cut(s)	162
AsuHPI	GGTGA	1 cut(s)	850
AsuNHI	GCTAGC	1 cut(s)	37
AvaI	CYCGRG	2 cut(s)	543, 771
BanI	GGYRCC	2 cut(s)	349, 715
BbvI	GCAGC	6 cut(s)	44, 65, 98, 462, 490, 790
BccI	CCATC	4 cut(s)	7, 95, 163, 970
BceAI	ACGGC	1 cut(s)	268
BciT130I	CCWGG	3 cut(s)	704, 825, 943
BciVI	GTATCC	1 cut(s)	98
BcnI	CCSGG	1 cut(s)	162
BcoDI	GTCTC	4 cut(s)	216, 362, 774, 825
BfaI	CTAG	2 cut(s)	38, 872
BfmI	CTRYAG	1 cut(s)	476
BfoI	RGCGCY	1 cut(s)	38
BfuAI	ACCTGC	1 cut(s)	676
BfuI	GTATCC	1 cut(s)	98
BglII	AGATCT	1 cut(s)	434
Bme1390I	CCNGG	4 cut(s)	162, 704, 825, 943
BmeT110I	CYCGRG	2 cut(s)	543, 771
BmgBI	CACGTC	1 cut(s)	401
BmgT120I	GGNCC	3 cut(s)	281, 508, 700
BmiI	GGNNCC	5 cut(s)	351, 509, 690, 717, 957
BmrFI	CCNGG	4 cut(s)	162, 704, 825, 943
BmsI	GCATC	2 cut(s)	177, 294
BmtI	GCTAGC	1 cut(s)	41
BpmI	CTGGAG	1 cut(s)	925
BpuMI	CCSGG	1 cut(s)	162
BsaHI	GRCGYC	3 cut(s)	529, 731, 767
BsaJI	CCNNGG	5 cut(s)	284, 702, 823, 858, 942
BsaXI	ACNNNNNCTCC	2 cut(s)	822, 852
Bsc4I	CCNNNNNNNGG	6 cut(s)	183, 709, 725, 862, 863, 965
Bse3DI	GCAATG	1 cut(s)	353
BseBI	CCWGG	3 cut(s)	704, 825, 943
BseDI	CCNNGG	5 cut(s)	284, 702, 823, 858, 942
BseGI	GGATG	3 cut(s)	192, 309, 394
BseLI	CCNNNNNNNGG	6 cut(s)	183, 709, 725, 862, 863, 965
BseMI	GCAATG	1 cut(s)	353
BseMII	CTCAG	2 cut(s)	323, 395
BseXI	GCAGC	6 cut(s)	44, 65, 98, 462, 490, 790
BseYI	CCCAGC	2 cut(s)	76, 563
BsgI	GTGCAG	1 cut(s)	602
BshFI	GGCC	4 cut(s)	283, 510, 701, 870
BshNI	GGYRCC	2 cut(s)	349, 715
BsiHKCI	CYCGRG	2 cut(s)	543, 771
BsiSI	CCGG	1 cut(s)	161
BslFI	GGGAC	1 cut(s)	632
BslI	CCNNNNNNNGG	6 cut(s)	183, 709, 725, 862, 863, 965
BsmAI	GTCTC	4 cut(s)	216, 362, 774, 825
BsmBI	CGTCTC	1 cut(s)	774
BsmFI	GGGAC	1 cut(s)	632
BsmI	GAATGC	1 cut(s)	263
BsnI	GGCC	4 cut(s)	283, 510, 701, 870
BsoBI	CYCGRG	2 cut(s)	543, 771
Bsp143I	GATC	6 cut(s)	71, 246, 434, 567, 585, 669
BspANI	GGCC	4 cut(s)	283, 510, 701, 870
BspCNI	CTCAG	2 cut(s)	324, 396
BspHI	TCATGA	1 cut(s)	637
BspLI	GGNNCC	5 cut(s)	351, 509, 690, 717, 957
BspMAI	CTGCAG	1 cut(s)	480
BspMI	ACCTGC	1 cut(s)	676
BspOI	GCTAGC	1 cut(s)	41
BspPI	GGATC	5 cut(s)	79, 241, 575, 580, 664
BspQI	GCTCTTC	1 cut(s)	146
BspT107I	GGYRCC	2 cut(s)	349, 715
BsrDI	GCAATG	1 cut(s)	353
BssECI	CCNNGG	5 cut(s)	284, 702, 823, 858, 942
BssMI	GATC	6 cut(s)	71, 246, 434, 567, 585, 669
BssNI	GRCGYC	3 cut(s)	529, 731, 767
Bst2UI	CCWGG	3 cut(s)	704, 825, 943
Bst4CI	ACNGT	3 cut(s)	720, 898, 952
Bst6I	CTCTTC	2 cut(s)	3, 146
BstACI	GRCGYC	3 cut(s)	529, 731, 767
BstC8I	GCNNGC	3 cut(s)	39, 158, 626
BstDEI	CTNAG	2 cut(s)	332, 404
BstDSI	CCRYGG	2 cut(s)	284, 858
BstF5I	GGATG	3 cut(s)	192, 309, 394
BstH2I	RGCGCY	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	37
BstKTI	GATC	6 cut(s)	74, 249, 437, 570, 588, 672
BstMAI	GTCTC	4 cut(s)	216, 362, 774, 825
BstMBI	GATC	6 cut(s)	71, 246, 434, 567, 585, 669
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 92, 682
BstNI	CCWGG	3 cut(s)	704, 825, 943
BstSCI	CCNGG	4 cut(s)	160, 702, 823, 941
BstSFI	CTRYAG	1 cut(s)	476
BstV1I	GCAGC	6 cut(s)	44, 65, 98, 462, 490, 790
BstX2I	RGATCY	4 cut(s)	246, 434, 567, 585
BstYI	RGATCY	4 cut(s)	246, 434, 567, 585
BsuI	GTATCC	1 cut(s)	98
BsuRI	GGCC	4 cut(s)	283, 510, 701, 870
BtgI	CCRYGG	2 cut(s)	284, 858
BtrI	CACGTC	1 cut(s)	401
BtsCI	GGATG	3 cut(s)	192, 309, 394
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	2 cut(s)	63, 957
BveI	ACCTGC	1 cut(s)	676
Cac8I	GCNNGC	3 cut(s)	39, 158, 626
CciI	TCATGA	1 cut(s)	637
CfoI	GCGC	1 cut(s)	37
Cfr13I	GGNCC	3 cut(s)	281, 508, 700
CseI	GACGC	2 cut(s)	518, 720
CviAII	CATG	3 cut(s)	208, 275, 638
DdeI	CTNAG	2 cut(s)	332, 404
DpnI	GATC	6 cut(s)	73, 248, 436, 569, 587, 671
DpnII	GATC	6 cut(s)	71, 246, 434, 567, 585, 669
DraI	TTTAAA	1 cut(s)	604
Eam1104I	CTCTTC	2 cut(s)	3, 146
EarI	CTCTTC	2 cut(s)	3, 146
EciI	GGCGGA	4 cut(s)	20, 476, 506, 590
Eco47III	AGCGCT	1 cut(s)	36
Eco57I	CTGAAG	1 cut(s)	476
Eco88I	CYCGRG	2 cut(s)	543, 771
EcoRI	GAATTC	1 cut(s)	925
EcoRII	CCWGG	3 cut(s)	702, 823, 941
Esp3I	CGTCTC	1 cut(s)	774
FaeI	CATG	3 cut(s)	211, 278, 641
FaqI	GGGAC	1 cut(s)	632
FatI	CATG	3 cut(s)	207, 274, 637
FauI	CCCGC	1 cut(s)	617
FauNDI	CATATG	1 cut(s)	360
FokI	GGATG	3 cut(s)	199, 316, 381
FspBI	CTAG	2 cut(s)	38, 872
GlaI	GCGC	1 cut(s)	36
GsaI	CCCAGC	2 cut(s)	80, 567
GsuI	CTGGAG	1 cut(s)	925
HaeII	RGCGCY	1 cut(s)	38
HaeIII	GGCC	4 cut(s)	283, 510, 701, 870
HapII	CCGG	1 cut(s)	161
HgaI	GACGC	2 cut(s)	518, 720
HhaI	GCGC	1 cut(s)	37
Hin1I	GRCGYC	3 cut(s)	529, 731, 767
Hin1II	CATG	3 cut(s)	211, 278, 641
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HinfI	GANTC	3 cut(s)	381, 549, 880
HpaII	CCGG	1 cut(s)	161
HphI	GGTGA	1 cut(s)	850
Hpy188I	TCNGA	5 cut(s)	333, 405, 456, 666, 693
Hpy188III	TCNNGA	3 cut(s)	215, 244, 638
Hpy99I	CGWCG	2 cut(s)	736, 769
HpyAV	CCTTC	5 cut(s)	187, 212, 451, 641, 688
HpyCH4III	ACNGT	3 cut(s)	720, 898, 952
HpyCH4IV	ACGT	3 cut(s)	22, 400, 767
HpyCH4V	TGCA	6 cut(s)	190, 261, 358, 478, 583, 806
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 92, 682
HpyF3I	CTNAG	2 cut(s)	332, 404
HpySE526I	ACGT	3 cut(s)	22, 400, 767
Hsp92I	GRCGYC	3 cut(s)	529, 731, 767
Hsp92II	CATG	3 cut(s)	211, 278, 641
HspAI	GCGC	1 cut(s)	35
Kzo9I	GATC	6 cut(s)	71, 246, 434, 567, 585, 669
LguI	GCTCTTC	1 cut(s)	146
Lsp1109I	GCAGC	6 cut(s)	44, 65, 98, 462, 490, 790
LweI	GCATC	2 cut(s)	177, 294
MaeI	CTAG	2 cut(s)	38, 872
MaeII	ACGT	3 cut(s)	22, 400, 767
MaeIII	GTNAC	2 cut(s)	934, 979
MalI	GATC	6 cut(s)	73, 248, 436, 569, 587, 671
MboI	GATC	6 cut(s)	71, 246, 434, 567, 585, 669
MboII	GAAGA	4 cut(s)	20, 110, 163, 429
MflI	RGATCY	4 cut(s)	246, 434, 567, 585
MluCI	AATT	3 cut(s)	423, 925, 974
MlyI	GAGTC	1 cut(s)	889
MmeI	TCCRAC	2 cut(s)	774, 902
MnlI	CCTC	9 cut(s)	43, 247, 337, 406, 539, 571, 748, 949, 969
MroXI	GAANNNNTTC	1 cut(s)	912
MseI	TTAA	3 cut(s)	44, 603, 891
MspA1I	CMGCKG	2 cut(s)	89, 475
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	4 cut(s)	162, 704, 825, 943
Mva1269I	GAATGC	1 cut(s)	263
MvaI	CCWGG	3 cut(s)	704, 825, 943
MwoI	GCNNNNNNNGC	3 cut(s)	38, 92, 682
NciI	CCSGG	1 cut(s)	162
NdeI	CATATG	1 cut(s)	360
NdeII	GATC	6 cut(s)	71, 246, 434, 567, 585, 669
NheI	GCTAGC	1 cut(s)	37
NlaIII	CATG	3 cut(s)	211, 278, 641
NlaIV	GGNNCC	5 cut(s)	351, 509, 690, 717, 957
NmeAIII	GCCGAG	1 cut(s)	551
NmuCI	GTSAC	1 cut(s)	979
PaeR7I	CTCGAG	1 cut(s)	543
PagI	TCATGA	1 cut(s)	637
PciSI	GCTCTTC	1 cut(s)	146
PctI	GAATGC	1 cut(s)	263
PdmI	GAANNNNTTC	1 cut(s)	912
PfeI	GAWTC	2 cut(s)	381, 549
PleI	GAGTC	1 cut(s)	888
PpsI	GAGTC	1 cut(s)	888
Psp6I	CCWGG	3 cut(s)	702, 823, 941
PspFI	CCCAGC	2 cut(s)	76, 563
PspGI	CCWGG	3 cut(s)	702, 823, 941
PspN4I	GGNNCC	5 cut(s)	351, 509, 690, 717, 957
PspPI	GGNCC	3 cut(s)	281, 508, 700
PspXI	VCTCGAGB	1 cut(s)	543
PstI	CTGCAG	1 cut(s)	480
PsuI	RGATCY	4 cut(s)	246, 434, 567, 585
SapI	GCTCTTC	1 cut(s)	146
SaqAI	TTAA	3 cut(s)	44, 603, 891
Sau3AI	GATC	6 cut(s)	71, 246, 434, 567, 585, 669
Sau96I	GGNCC	3 cut(s)	281, 508, 700
SchI	GAGTC	1 cut(s)	889
ScrFI	CCNGG	4 cut(s)	162, 704, 825, 943
SfaNI	GCATC	2 cut(s)	177, 294
SfcI	CTRYAG	1 cut(s)	476
Sfr274I	CTCGAG	1 cut(s)	543
SlaI	CTCGAG	1 cut(s)	543
SmlI	CTYRAG	1 cut(s)	543
SmoI	CTYRAG	1 cut(s)	543
Sse9I	AATT	3 cut(s)	423, 925, 974
SspMI	CTAG	2 cut(s)	38, 872
StyD4I	CCNGG	4 cut(s)	160, 702, 823, 941
TaaI	ACNGT	3 cut(s)	720, 898, 952
TaiI	ACGT	3 cut(s)	25, 403, 770
TaqI	TCGA	2 cut(s)	121, 544
TasI	AATT	3 cut(s)	423, 925, 974
TauI	GCSGC	4 cut(s)	20, 491, 529, 716
TfiI	GAWTC	2 cut(s)	381, 549
Tru1I	TTAA	3 cut(s)	44, 603, 891
Tru9I	TTAA	3 cut(s)	44, 603, 891
TscAI	CASTG	2 cut(s)	63, 957
TseFI	GTSAC	1 cut(s)	979
TseI	GCWGC	6 cut(s)	32, 53, 86, 475, 478, 803
Tsp45I	GTSAC	1 cut(s)	979
TspDTI	ATGAA	2 cut(s)	263, 654
TspGWI	ACGGA	4 cut(s)	62, 239, 425, 578
TspRI	CASTG	2 cut(s)	63, 957
XapI	RAATTY	1 cut(s)	925
XcmI	CCANNNNNNNNNTGG	1 cut(s)	949
XhoI	CTCGAG	1 cut(s)	543
XmnI	GAANNNNTTC	1 cut(s)	912
XspI	CTAG	2 cut(s)	38, 872
ZraI	GACGTC	1 cut(s)	768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.