Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

72369298 .. 72371897

Gene Structure 2600 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0606100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGATTATAATAATCGATCTATTCCAGTTTGCAACACATTGTGCTTACAGTGCCTATAACCAGTGGGTGGCTTCGCATATCAGACCAGGAAAAATCAATTTGTCATCGACCGGAAGCAGCTTTTACTTTCTAAATCCTGAGGTACCACTAGCTAATGATTACAAGAGAGAGTTCACAGGAGCTCAGTACGCTGTATATATACAACCTGCTGCAGAAAACCGGTTCATGGGTGTTCAAGATTTGGAAACTGTGGAAAAATTATCTTTATCAGATTTAAACCTACTTGATACCACCGACAACGAGGAGCAGCTCAAATACTGCAGAGCTACTCTAAAAAAAATTGTAGAAGAAGATGGGTGGTACTATCTGGGATGCCCGATCTGCTACAAACAAATGAGGAAAAAACCGGACAGTGAACTGCTCATATGCCAACAGCATGATATGCAGCACCACAAATATACCTTCAGAGTCACTCTTCTCATTGAAGATGAGACTGATCAAGCACATGCAGTCTTAATGGGCAAAGAAGCAGAAGAAATCTGTGGAATCTCATGCGAGGACTTGATTATCAAGAAAAACTGCAAAAACCAAAGGATCATACCACAAGAAATTCTTCAATTAGAAGGACAGATCAAGCTGCTGAAATTGAAACCAGGAACAAAAAGAGATTTCCTTATAAAGGGGATATACGAAGATGTTCACAAGTTCACACCAACCCAAGATATCGAACCAACAACTTCCACGCCAAATAAGAAAATATTTGAGAAGAAGAGGAAGGAATTGTTCAAAGCAAAACCAAGCAAGAACCCAAAAAGTGACAACTTTGAACCATCAGATCAGAGCAGCGCAAATACATCGGCCCAATCTGACACAGAAGACCTTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

295

Amino Acids

33.93

Weight (kDa)

5.87

Isoelectric Point (pI)

37.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rep_fac-A_C	PF08646	107 - 202	2.4e-07	Replication factor-A C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	8, 677
Acc36I	ACCTGC	1 cut(s)	214
Acc65I	GGTACC	1 cut(s)	142
AccB1I	GGYRCC	1 cut(s)	142
AccB7I	CCANNNNNTGG	1 cut(s)	67
AclWI	GGATC	1 cut(s)	602
AcsI	RAATTY	1 cut(s)	609
AcuI	CTGAAG	1 cut(s)	448
AdeI	CACNNNGTG	1 cut(s)	41
AfaI	GTAC	3 cut(s)	144, 188, 362
AfiI	CCNNNNNNNGG	3 cut(s)	67, 226, 679
AgeI	ACCGGT	1 cut(s)	219
AgsI	TTSAA	6 cut(s)	236, 485, 617, 649, 787, 827
AjnI	CCWGG	2 cut(s)	85, 652
AluBI	AGCT	6 cut(s)	120, 152, 182, 310, 326, 637
AluI	AGCT	6 cut(s)	120, 152, 182, 310, 326, 637
Alw21I	GWGCWC	1 cut(s)	184
Alw26I	GTCTC	1 cut(s)	485
AlwI	GGATC	1 cut(s)	602
AoxI	GGCC	1 cut(s)	858
ApeKI	GCWGC	6 cut(s)	117, 209, 307, 445, 637, 843
ApoI	RAATTY	1 cut(s)	609
AsiGI	ACCGGT	1 cut(s)	219
Asp700I	GAANNNNTTC	2 cut(s)	612, 696
Asp718I	GGTACC	1 cut(s)	142
AspLEI	GCGC	1 cut(s)	848
AspS9I	GGNCC	1 cut(s)	859
AxyI	CCTNAGG	1 cut(s)	138
BanI	GGYRCC	1 cut(s)	142
BanII	GRGCYC	1 cut(s)	184
BbsI	GAAGAC	1 cut(s)	882
Bbv12I	GWGCWC	1 cut(s)	184
BbvI	GCAGC	6 cut(s)	129, 196, 319, 457, 624, 855
BccI	CCATC	2 cut(s)	347, 838
BcgI	CGANNNNNNTGC	2 cut(s)	837, 871
BciT130I	CCWGG	2 cut(s)	87, 654
BclI	TGATCA	1 cut(s)	496
BcoDI	GTCTC	1 cut(s)	485
BfaI	CTAG	2 cut(s)	149, 886
BfmI	CTRYAG	2 cut(s)	210, 319
BfuAI	ACCTGC	1 cut(s)	214
BisI	GCNGC	6 cut(s)	118, 210, 308, 446, 638, 844
BlsI	GCNGC	6 cut(s)	119, 211, 309, 447, 639, 845
Bme1390I	CCNGG	2 cut(s)	87, 654
BmgT120I	GGNCC	1 cut(s)	859
BmiI	GGNNCC	1 cut(s)	144
BmrFI	CCNGG	2 cut(s)	87, 654
BmsI	GCATC	1 cut(s)	362
BpiI	GAAGAC	1 cut(s)	882
Bsa29I	ATCGAT	1 cut(s)	15
BsaWI	WCCGGW	3 cut(s)	110, 219, 406
Bsc4I	CCNNNNNNNGG	3 cut(s)	67, 226, 679
Bse118I	RCCGGY	1 cut(s)	219
Bse1I	ACTGG	2 cut(s)	25, 61
Bse21I	CCTNAGG	1 cut(s)	138
BseBI	CCWGG	2 cut(s)	87, 654
BseCI	ATCGAT	1 cut(s)	15
BseGI	GGATG	1 cut(s)	377
BseLI	CCNNNNNNNGG	3 cut(s)	67, 226, 679
BseMII	CTCAG	2 cut(s)	129, 197
BseNI	ACTGG	2 cut(s)	25, 61
BseRI	GAGGAG	1 cut(s)	317
BseXI	GCAGC	6 cut(s)	129, 196, 319, 457, 624, 855
Bsh1285I	CGRYCG	1 cut(s)	111
BshFI	GGCC	1 cut(s)	860
BshNI	GGYRCC	1 cut(s)	142
BshTI	ACCGGT	1 cut(s)	219
BshVI	ATCGAT	1 cut(s)	15
BsiEI	CGRYCG	1 cut(s)	111
BsiHKAI	GWGCWC	1 cut(s)	184
BsiSI	CCGG	3 cut(s)	111, 220, 407
BslI	CCNNNNNNNGG	3 cut(s)	67, 226, 679
BsmAI	GTCTC	1 cut(s)	485
BsnI	GGCC	1 cut(s)	860
Bsp1286I	GDGCHC	1 cut(s)	184
Bsp143I	GATC	6 cut(s)	16, 378, 496, 594, 630, 835
BspANI	GGCC	1 cut(s)	860
BspCNI	CTCAG	2 cut(s)	130, 196
BspDI	ATCGAT	1 cut(s)	15
BspLI	GGNNCC	1 cut(s)	144
BspMAI	CTGCAG	2 cut(s)	214, 323
BspMI	ACCTGC	1 cut(s)	214
BspPI	GGATC	1 cut(s)	602
BspT107I	GGYRCC	1 cut(s)	142
BsrFI	RCCGGY	1 cut(s)	219
BsrI	ACTGG	2 cut(s)	25, 61
BssAI	RCCGGY	1 cut(s)	219
BssMI	GATC	6 cut(s)	16, 378, 496, 594, 630, 835
Bst2UI	CCWGG	2 cut(s)	87, 654
Bst4CI	ACNGT	3 cut(s)	50, 250, 413
Bst6I	CTCTTC	2 cut(s)	480, 764
BstAPI	GCANNNNNTGC	1 cut(s)	442
BstDEI	CTNAG	2 cut(s)	138, 183
BstENI	CCTNNNNNAGG	1 cut(s)	677
BstF5I	GGATG	1 cut(s)	377
BstHHI	GCGC	1 cut(s)	848
BstKTI	GATC	6 cut(s)	19, 381, 499, 597, 633, 838
BstMAI	GTCTC	1 cut(s)	485
BstMBI	GATC	6 cut(s)	16, 378, 496, 594, 630, 835
BstMCI	CGRYCG	1 cut(s)	111
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 188, 381, 442
BstNI	CCWGG	2 cut(s)	87, 654
BstNSI	RCATGY	1 cut(s)	509
BstSCI	CCNGG	2 cut(s)	85, 652
BstSFI	CTRYAG	2 cut(s)	210, 319
BstV1I	GCAGC	6 cut(s)	129, 196, 319, 457, 624, 855
BstV2I	GAAGAC	1 cut(s)	882
Bsu15I	ATCGAT	1 cut(s)	15
Bsu36I	CCTNAGG	1 cut(s)	138
BsuRI	GGCC	1 cut(s)	860
BsuTUI	ATCGAT	1 cut(s)	15
BtsCI	GGATG	1 cut(s)	377
BtsIMutI	CAGTG	3 cut(s)	55, 68, 418
BveI	ACCTGC	1 cut(s)	214
CfoI	GCGC	1 cut(s)	848
Cfr10I	RCCGGY	1 cut(s)	219
Cfr13I	GGNCC	1 cut(s)	859
ClaI	ATCGAT	1 cut(s)	15
Csp6I	GTAC	3 cut(s)	143, 187, 361
CspAI	ACCGGT	1 cut(s)	219
CviAII	CATG	4 cut(s)	226, 437, 506, 552
CviJI	RGCY	8 cut(s)	71, 120, 152, 182, 310, 326, 637, 860
CviKI_1	RGCY	8 cut(s)	71, 120, 152, 182, 310, 326, 637, 860
CviQI	GTAC	3 cut(s)	143, 187, 361
DdeI	CTNAG	2 cut(s)	138, 183
DpnI	GATC	6 cut(s)	18, 380, 498, 596, 632, 837
DpnII	GATC	6 cut(s)	16, 378, 496, 594, 630, 835
DraI	TTTAAA	1 cut(s)	276
DraIII	CACNNNGTG	1 cut(s)	41
Eam1104I	CTCTTC	2 cut(s)	480, 764
EarI	CTCTTC	2 cut(s)	480, 764
Ecl136II	GAGCTC	1 cut(s)	182
Eco24I	GRGCYC	1 cut(s)	184
Eco32I	GATATC	1 cut(s)	724
Eco53kI	GAGCTC	1 cut(s)	182
Eco57I	CTGAAG	1 cut(s)	448
Eco81I	CCTNAGG	1 cut(s)	138
EcoICRI	GAGCTC	1 cut(s)	182
EcoNI	CCTNNNNNAGG	1 cut(s)	677
EcoRII	CCWGG	2 cut(s)	85, 652
EcoRV	GATATC	1 cut(s)	724
EcoT38I	GRGCYC	1 cut(s)	184
FaeI	CATG	4 cut(s)	229, 440, 509, 555
FalI	AAGNNNNNCTT	2 cut(s)	597, 629
FatI	CATG	4 cut(s)	225, 436, 505, 551
FauNDI	CATATG	1 cut(s)	425
FbaI	TGATCA	1 cut(s)	496
Fnu4HI	GCNGC	6 cut(s)	118, 210, 308, 446, 638, 844
FokI	GGATG	1 cut(s)	384
FriOI	GRGCYC	1 cut(s)	184
Fsp4HI	GCNGC	6 cut(s)	118, 210, 308, 446, 638, 844
FspBI	CTAG	2 cut(s)	149, 886
GlaI	GCGC	1 cut(s)	847
GluI	GCNGC	6 cut(s)	118, 210, 308, 446, 638, 844
HaeIII	GGCC	1 cut(s)	860
HapII	CCGG	3 cut(s)	111, 220, 407
HhaI	GCGC	1 cut(s)	848
Hin1II	CATG	4 cut(s)	229, 440, 509, 555
Hin6I	GCGC	1 cut(s)	846
HinP1I	GCGC	1 cut(s)	846
HinfI	GANTC	2 cut(s)	468, 546
HpaII	CCGG	3 cut(s)	111, 220, 407
Hpy166II	GTNNAC	4 cut(s)	174, 416, 700, 708
Hpy188I	TCNGA	6 cut(s)	83, 271, 467, 835, 840, 868
Hpy188III	TCNNGA	3 cut(s)	137, 236, 571
Hpy8I	GTNNAC	4 cut(s)	174, 416, 700, 708
HpyAV	CCTTC	3 cut(s)	472, 617, 769
HpyCH4III	ACNGT	3 cut(s)	50, 250, 413
HpyCH4V	TGCA	6 cut(s)	32, 212, 321, 445, 509, 582
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 188, 381, 442
HpyF3I	CTNAG	2 cut(s)	138, 183
Hsp92II	CATG	4 cut(s)	229, 440, 509, 555
HspAI	GCGC	1 cut(s)	846
KpnI	GGTACC	1 cut(s)	146
Ksp22I	TGATCA	1 cut(s)	496
Kzo9I	GATC	6 cut(s)	16, 378, 496, 594, 630, 835
LmnI	GCTCC	2 cut(s)	179, 304
Lsp1109I	GCAGC	6 cut(s)	129, 196, 319, 457, 624, 855
LweI	GCATC	1 cut(s)	362
MaeI	CTAG	2 cut(s)	149, 886
MaeIII	GTNAC	2 cut(s)	469, 815
MalI	GATC	6 cut(s)	18, 380, 498, 596, 632, 837
MboI	GATC	6 cut(s)	16, 378, 496, 594, 630, 835
MhlI	GDGCHC	1 cut(s)	184
MluCI	AATT	7 cut(s)	97, 257, 339, 609, 617, 644, 779
MlyI	GAGTC	1 cut(s)	477
MnlI	CCTC	5 cut(s)	133, 295, 390, 550, 765
MroXI	GAANNNNTTC	2 cut(s)	612, 696
MseI	TTAA	2 cut(s)	275, 515
MspI	CCGG	3 cut(s)	111, 220, 407
MspR9I	CCNGG	2 cut(s)	87, 654
MvaI	CCWGG	2 cut(s)	87, 654
MwoI	GCNNNNNNNGC	4 cut(s)	50, 188, 381, 442
NdeI	CATATG	1 cut(s)	425
NdeII	GATC	6 cut(s)	16, 378, 496, 594, 630, 835
NlaIII	CATG	4 cut(s)	229, 440, 509, 555
NlaIV	GGNNCC	1 cut(s)	144
NmuCI	GTSAC	2 cut(s)	469, 815
NspI	RCATGY	1 cut(s)	509
PdmI	GAANNNNTTC	2 cut(s)	612, 696
PfeI	GAWTC	1 cut(s)	546
PflMI	CCANNNNNTGG	1 cut(s)	67
PinAI	ACCGGT	1 cut(s)	219
PkrI	GCNGC	6 cut(s)	119, 211, 309, 447, 639, 845
PleI	GAGTC	1 cut(s)	476
PpsI	GAGTC	1 cut(s)	476
PsiI	TTATAA	2 cut(s)	8, 677
Psp124BI	GAGCTC	1 cut(s)	184
Psp6I	CCWGG	2 cut(s)	85, 652
PspGI	CCWGG	2 cut(s)	85, 652
PspN4I	GGNNCC	1 cut(s)	144
PspPI	GGNCC	1 cut(s)	859
PstI	CTGCAG	2 cut(s)	214, 323
RsaI	GTAC	3 cut(s)	144, 188, 362
RsaNI	GTAC	3 cut(s)	143, 187, 361
SacI	GAGCTC	1 cut(s)	184
SaqAI	TTAA	2 cut(s)	275, 515
SatI	GCNGC	6 cut(s)	118, 210, 308, 446, 638, 844
Sau3AI	GATC	6 cut(s)	16, 378, 496, 594, 630, 835
Sau96I	GGNCC	1 cut(s)	859
SchI	GAGTC	1 cut(s)	477
ScrFI	CCNGG	2 cut(s)	87, 654
SduI	GDGCHC	1 cut(s)	184
SfaNI	GCATC	1 cut(s)	362
SfcI	CTRYAG	2 cut(s)	210, 319
Sse9I	AATT	7 cut(s)	97, 257, 339, 609, 617, 644, 779
SspI	AATATT	1 cut(s)	759
SspMI	CTAG	2 cut(s)	149, 886
SstI	GAGCTC	1 cut(s)	184
StyD4I	CCNGG	2 cut(s)	85, 652
TaaI	ACNGT	3 cut(s)	50, 250, 413
TaqI	TCGA	3 cut(s)	15, 107, 726
TasI	AATT	7 cut(s)	97, 257, 339, 609, 617, 644, 779
TfiI	GAWTC	1 cut(s)	546
Tru1I	TTAA	2 cut(s)	275, 515
Tru9I	TTAA	2 cut(s)	275, 515
TscAI	CASTG	3 cut(s)	55, 68, 418
TseFI	GTSAC	2 cut(s)	469, 815
TseI	GCWGC	6 cut(s)	117, 209, 307, 445, 637, 843
Tsp45I	GTSAC	2 cut(s)	469, 815
TspDTI	ATGAA	1 cut(s)	214
TspRI	CASTG	3 cut(s)	55, 68, 418
Van91I	CCANNNNNTGG	1 cut(s)	67
XagI	CCTNNNNNAGG	1 cut(s)	677
XapI	RAATTY	1 cut(s)	609
XceI	RCATGY	1 cut(s)	509
XmnI	GAANNNNTTC	2 cut(s)	612, 696
XspI	CTAG	2 cut(s)	149, 886

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.