Rorug02G0619800

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
N/A
Physical Location & Seq
Reverse (-)
73690495 .. 73690908
414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0619800.1

Sequence Viewer

Length: 414 bp
ATGGGAGTTGGAGGAAGTTTGGAGTACTTGTCTGATCTAATGGGTAGTGGTGGCCATAAAGACAAAAAGAAGAAGCAATTAAAGACTGTGGAGCTCAAAGTCAGAATGGACTGTGATGGTTGTGAGCTCAAGGTCAAGAAGGCCCTCTCTTCTTTAAGTGGAGTTAAATCTGTGGAGATTAACAGAAAGCAAAAGAAGGTGAGTGTTACAGGGTATGTTGAACCAAACAAGGTGCTGAAGAAGGCAAAGTCAACAGGGAAAAGAGCGGAGATATGGCCTTATGTTCCCTACAATCTAGTGGCTCAAGCTTATGACAAGAAAGCACCTCCTGGTTATGTCAGGAAAGTGGAGAACACTCCAACTACTGGCACCATGACAAGATATGAAGACCCCCTACACTGCCATGTTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

137

Amino Acids

15.23

Weight (kDa)

9.69

Isoelectric Point (pI)

23.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 33 - 87 2.6e-14 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 368
AccB7I CCANNNNNTGG 1 cut(s) 365
AccBSI CCGCTC 1 cut(s) 266
AciI CCGC 1 cut(s) 266
AcoI YGGCCR 1 cut(s) 52
AcuI CTGAAG 1 cut(s) 257
AfaI GTAC 1 cut(s) 26
AfiI CCNNNNNNNGG 1 cut(s) 365
AgsI TTSAA 1 cut(s) 221
AjnI CCWGG 1 cut(s) 328
AluBI AGCT 3 cut(s) 94, 127, 308
AluI AGCT 3 cut(s) 94, 127, 308
Alw21I GWGCWC 2 cut(s) 96, 129
AoxI GGCC 3 cut(s) 52, 141, 275
AspS9I GGNCC 1 cut(s) 142
AsuHPI GGTGA 1 cut(s) 211
BalI TGGCCA 1 cut(s) 54
BanI GGYRCC 1 cut(s) 368
BanII GRGCYC 2 cut(s) 96, 129
BarI GAAGNNNNNNTAC 2 cut(s) 378, 410
BbsI GAAGAC 1 cut(s) 393
Bbv12I GWGCWC 2 cut(s) 96, 129
BccI CCATC 1 cut(s) 110
BciT130I CCWGG 1 cut(s) 330
BfaI CTAG 1 cut(s) 296
BmcAI AGTACT 1 cut(s) 26
Bme1390I CCNGG 1 cut(s) 330
BmgT120I GGNCC 1 cut(s) 142
BmiI GGNNCC 1 cut(s) 370
BmrFI CCNGG 1 cut(s) 330
BpiI GAAGAC 1 cut(s) 393
BpuEI CTTGAG 2 cut(s) 113, 288
BsaXI ACNNNNNCTCC 2 cut(s) 14, 44
Bsc4I CCNNNNNNNGG 1 cut(s) 365
Bse1I ACTGG 1 cut(s) 370
BseBI CCWGG 1 cut(s) 330
BseLI CCNNNNNNNGG 1 cut(s) 365
BseNI ACTGG 1 cut(s) 370
BshFI GGCC 3 cut(s) 54, 143, 277
BshNI GGYRCC 1 cut(s) 368
BsiHKAI GWGCWC 2 cut(s) 96, 129
BslI CCNNNNNNNGG 1 cut(s) 365
BsnI GGCC 3 cut(s) 54, 143, 277
Bsp1286I GDGCHC 2 cut(s) 96, 129
Bsp143I GATC 1 cut(s) 34
BspACI CCGC 1 cut(s) 266
BspANI GGCC 3 cut(s) 54, 143, 277
BspLI GGNNCC 1 cut(s) 370
BspT107I GGYRCC 1 cut(s) 368
BsrBI CCGCTC 1 cut(s) 266
BsrI ACTGG 1 cut(s) 370
BssMI GATC 1 cut(s) 34
Bst2UI CCWGG 1 cut(s) 330
Bst4CI ACNGT 2 cut(s) 88, 113
Bst6I CTCTTC 1 cut(s) 154
BstKTI GATC 1 cut(s) 37
BstMBI GATC 1 cut(s) 34
BstNI CCWGG 1 cut(s) 330
BstSCI CCNGG 1 cut(s) 328
BstV2I GAAGAC 1 cut(s) 393
BsuRI GGCC 3 cut(s) 54, 143, 277
BtsI GCAGTG 1 cut(s) 397
BtsIMutI CAGTG 1 cut(s) 397
Cfr13I GGNCC 1 cut(s) 142
Csp6I GTAC 1 cut(s) 25
CviAII CATG 2 cut(s) 373, 404
CviJI RGCY 7 cut(s) 54, 94, 127, 143, 277, 302, 308
CviKI_1 RGCY 7 cut(s) 54, 94, 127, 143, 277, 302, 308
CviQI GTAC 1 cut(s) 25
DpnI GATC 1 cut(s) 36
DpnII GATC 1 cut(s) 34
EaeI YGGCCR 1 cut(s) 52
Eam1104I CTCTTC 1 cut(s) 154
EarI CTCTTC 1 cut(s) 154
Ecl136II GAGCTC 2 cut(s) 94, 127
Eco24I GRGCYC 2 cut(s) 96, 129
Eco53kI GAGCTC 2 cut(s) 94, 127
Eco57I CTGAAG 1 cut(s) 257
EcoICRI GAGCTC 2 cut(s) 94, 127
EcoO109I RGGNCCY 1 cut(s) 142
EcoRII CCWGG 1 cut(s) 328
EcoT38I GRGCYC 2 cut(s) 96, 129
FaeI CATG 2 cut(s) 376, 407
FaiI YATR 9 cut(s) 57, 216, 274, 282, 312, 336, 374, 384, 405
FatI CATG 2 cut(s) 372, 403
FriOI GRGCYC 2 cut(s) 96, 129
FspBI CTAG 1 cut(s) 296
HaeIII GGCC 3 cut(s) 54, 143, 277
Hin1II CATG 2 cut(s) 376, 407
HincII GTYRAC 1 cut(s) 252
HindII GTYRAC 1 cut(s) 252
HindIII AAGCTT 1 cut(s) 306
HphI GGTGA 1 cut(s) 211
Hpy166II GTNNAC 1 cut(s) 252
Hpy188I TCNGA 2 cut(s) 34, 104
Hpy188III TCNNGA 2 cut(s) 136, 340
Hpy8I GTNNAC 1 cut(s) 252
HpyAV CCTTC 3 cut(s) 133, 190, 235
HpyCH4III ACNGT 2 cut(s) 88, 113
Hsp92II CATG 2 cut(s) 376, 407
Kzo9I GATC 1 cut(s) 34
LmnI GCTCC 1 cut(s) 91
LpnPI CCDG 6 cut(s) 195, 240, 315, 325, 342, 351
MaeI CTAG 1 cut(s) 296
MaeIII GTNAC 1 cut(s) 205
MalI GATC 1 cut(s) 36
MbiI CCGCTC 1 cut(s) 266
MboI GATC 1 cut(s) 34
MboII GAAGA 4 cut(s) 82, 141, 250, 398
MhlI GDGCHC 2 cut(s) 96, 129
MlsI TGGCCA 1 cut(s) 54
MluCI AATT 1 cut(s) 77
MluNI TGGCCA 1 cut(s) 54
MmeI TCCRAC 1 cut(s) 383
MnlI CCTC 3 cut(s) 5, 155, 336
Mox20I TGGCCA 1 cut(s) 54
MscI TGGCCA 1 cut(s) 54
MseI TTAA 4 cut(s) 80, 155, 165, 180
MslI CAYNNNNRTG 1 cut(s) 402
Msp20I TGGCCA 1 cut(s) 54
MspR9I CCNGG 1 cut(s) 330
MvaI CCWGG 1 cut(s) 330
NdeII GATC 1 cut(s) 34
NlaIII CATG 2 cut(s) 376, 407
NlaIV GGNNCC 1 cut(s) 370
PflMI CCANNNNNTGG 1 cut(s) 365
Psp124BI GAGCTC 2 cut(s) 96, 129
Psp6I CCWGG 1 cut(s) 328
PspGI CCWGG 1 cut(s) 328
PspN4I GGNNCC 1 cut(s) 370
PspPI GGNCC 1 cut(s) 142
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
RseI CAYNNNNRTG 1 cut(s) 402
SacI GAGCTC 2 cut(s) 96, 129
SaqAI TTAA 4 cut(s) 80, 155, 165, 180
Sau3AI GATC 1 cut(s) 34
Sau96I GGNCC 1 cut(s) 142
ScaI AGTACT 1 cut(s) 26
ScrFI CCNGG 1 cut(s) 330
SduI GDGCHC 2 cut(s) 96, 129
SetI ASST 7 cut(s) 96, 129, 135, 201, 234, 310, 328
SmiMI CAYNNNNRTG 1 cut(s) 402
SmlI CTYRAG 2 cut(s) 128, 303
SmoI CTYRAG 2 cut(s) 128, 303
Sse9I AATT 1 cut(s) 77
SsiI CCGC 1 cut(s) 266
SspMI CTAG 1 cut(s) 296
SstI GAGCTC 2 cut(s) 96, 129
StyD4I CCNGG 1 cut(s) 328
TaaI ACNGT 2 cut(s) 88, 113
TasI AATT 1 cut(s) 77
TatI WGTACW 1 cut(s) 24
Tru1I TTAA 4 cut(s) 80, 155, 165, 180
Tru9I TTAA 4 cut(s) 80, 155, 165, 180
TscAI CASTG 1 cut(s) 404
TspDTI ATGAA 1 cut(s) 399
TspRI CASTG 1 cut(s) 404
Van91I CCANNNNNTGG 1 cut(s) 365
XspI CTAG 1 cut(s) 296
ZrmI AGTACT 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.