Rorug02G0640700

serine threonine-protein kinase HT1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
N/A
Physical Location & Seq
Forward (+)
75307624 .. 75308428
805 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0640700.1

Sequence Viewer

Length: 309 bp
ATGAGAGGACATGTCCTTTTGTTCAGGAACCTTATGGCCTTCGAGCAGTGTTATCACAGTTGCGCGCACACGATCACATCCTACGCGGTTTTGATGGATAACCTCATCGATACGAACAAGGATGTGGATCTTCTATGTGAGAAAGATATATTAGCCAATTGGTTGAGTGCTGATGATGCTTCGAAGTTCTTCAACGCTCTATATACTGACACCACAGTTATTGACTTTGCCTACCAGGATCTCTGCGGAGAAGTGCATAAATATCACAAATGCTCCATGGAACAAGTGGAGAGAGAAATTGAAACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

102

Amino Acids

11.83

Weight (kDa)

4.72

Isoelectric Point (pI)

27.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 6 - 93 8.5e-26 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 65, 86
AciI CCGC 2 cut(s) 86, 246
AclWI GGATC 2 cut(s) 135, 246
AflIII ACRYGT 1 cut(s) 10
AgsI TTSAA 2 cut(s) 193, 302
AjnI CCWGG 1 cut(s) 234
AlwI GGATC 2 cut(s) 135, 246
AoxI GGCC 1 cut(s) 36
Asp700I GAANNNNTTC 1 cut(s) 188
AspLEI GCGC 2 cut(s) 65, 67
AsuII TTCGAA 1 cut(s) 182
BccI CCATC 1 cut(s) 88
BciT130I CCWGG 1 cut(s) 236
Bme1390I CCNGG 1 cut(s) 236
BmiI GGNNCC 1 cut(s) 29
BmrFI CCNGG 1 cut(s) 236
BmsI GCATC 1 cut(s) 166
Bpu14I TTCGAA 1 cut(s) 182
Bsa29I ATCGAT 1 cut(s) 108
BsaBI GATNNNNATC 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 276
BsaXI ACNNNNNCTCC 2 cut(s) 257, 287
Bse8I GATNNNNATC 1 cut(s) 126
BseBI CCWGG 1 cut(s) 236
BseCI ATCGAT 1 cut(s) 108
BseDI CCNNGG 1 cut(s) 276
BseGI GGATG 2 cut(s) 77, 127
BseJI GATNNNNATC 1 cut(s) 126
BsePI GCGCGC 1 cut(s) 63
Bsh1236I CGCG 2 cut(s) 65, 86
BshFI GGCC 1 cut(s) 38
BshVI ATCGAT 1 cut(s) 108
BsnI GGCC 1 cut(s) 38
Bsp119I TTCGAA 1 cut(s) 182
Bsp143I GATC 3 cut(s) 72, 127, 238
Bsp19I CCATGG 1 cut(s) 276
BspACI CCGC 2 cut(s) 86, 246
BspANI GGCC 1 cut(s) 38
BspDI ATCGAT 1 cut(s) 108
BspFNI CGCG 2 cut(s) 65, 86
BspLI GGNNCC 1 cut(s) 29
BspPI GGATC 2 cut(s) 135, 246
BspT104I TTCGAA 1 cut(s) 182
BssECI CCNNGG 1 cut(s) 276
BssHII GCGCGC 1 cut(s) 63
BssMI GATC 3 cut(s) 72, 127, 238
BssT1I CCWWGG 1 cut(s) 276
Bst2UI CCWGG 1 cut(s) 236
Bst4CI ACNGT 2 cut(s) 59, 217
BstBI TTCGAA 1 cut(s) 182
BstC8I GCNNGC 1 cut(s) 65
BstDSI CCRYGG 1 cut(s) 276
BstF5I GGATG 2 cut(s) 77, 127
BstFNI CGCG 2 cut(s) 65, 86
BstHHI GCGC 2 cut(s) 65, 67
BstKTI GATC 3 cut(s) 75, 130, 241
BstMBI GATC 3 cut(s) 72, 127, 238
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstNI CCWGG 1 cut(s) 236
BstNSI RCATGY 1 cut(s) 14
BstSCI CCNGG 1 cut(s) 234
BstUI CGCG 2 cut(s) 65, 86
BstX2I RGATCY 2 cut(s) 127, 238
BstYI RGATCY 2 cut(s) 127, 238
Bsu15I ATCGAT 1 cut(s) 108
BsuRI GGCC 1 cut(s) 38
BsuTUI ATCGAT 1 cut(s) 108
BtgI CCRYGG 1 cut(s) 276
BtsCI GGATG 2 cut(s) 77, 127
BtsI GCAGTG 1 cut(s) 53
BtsIMutI CAGTG 1 cut(s) 53
Cac8I GCNNGC 1 cut(s) 65
CfoI GCGC 2 cut(s) 65, 67
ClaI ATCGAT 1 cut(s) 108
CspCI CAANNNNNGTGG 2 cut(s) 202, 237
CviAII CATG 2 cut(s) 11, 277
CviJI RGCY 2 cut(s) 38, 155
CviKI_1 RGCY 2 cut(s) 38, 155
DpnI GATC 3 cut(s) 74, 129, 240
DpnII GATC 3 cut(s) 72, 127, 238
Eco130I CCWWGG 1 cut(s) 276
EcoRII CCWGG 1 cut(s) 234
EcoT14I CCWWGG 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 2 cut(s) 14, 280
FaiI YATR 8 cut(s) 12, 35, 136, 149, 202, 204, 258, 278
FatI CATG 2 cut(s) 10, 276
FokI GGATG 2 cut(s) 64, 134
GlaI GCGC 2 cut(s) 64, 66
HaeIII GGCC 1 cut(s) 38
HhaI GCGC 2 cut(s) 65, 67
Hin1II CATG 2 cut(s) 14, 280
Hin6I GCGC 2 cut(s) 63, 65
HinP1I GCGC 2 cut(s) 63, 65
Hpy188III TCNNGA 1 cut(s) 25
HpyAV CCTTC 1 cut(s) 49
HpyCH4III ACNGT 2 cut(s) 59, 217
HpyCH4IV ACGT 1 cut(s) 305
HpyCH4V TGCA 1 cut(s) 256
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
HpySE526I ACGT 1 cut(s) 305
Hsp92II CATG 2 cut(s) 14, 280
HspAI GCGC 2 cut(s) 63, 65
Kzo9I GATC 3 cut(s) 72, 127, 238
LmnI GCTCC 1 cut(s) 278
LpnPI CCDG 3 cut(s) 10, 221, 248
LweI GCATC 1 cut(s) 166
MaeII ACGT 1 cut(s) 305
MalI GATC 3 cut(s) 74, 129, 240
MboI GATC 3 cut(s) 72, 127, 238
MboII GAAGA 2 cut(s) 122, 181
MfeI CAATTG 1 cut(s) 157
MflI RGATCY 2 cut(s) 127, 238
MluCI AATT 2 cut(s) 157, 297
MnlI CCTC 1 cut(s) 113
MroXI GAANNNNTTC 1 cut(s) 188
MspR9I CCNGG 1 cut(s) 236
MunI CAATTG 1 cut(s) 157
MvaI CCWGG 1 cut(s) 236
MvnI CGCG 2 cut(s) 65, 86
MwoI GCNNNNNNNGC 1 cut(s) 176
NcoI CCATGG 1 cut(s) 276
NdeII GATC 3 cut(s) 72, 127, 238
NlaIII CATG 2 cut(s) 14, 280
NlaIV GGNNCC 1 cut(s) 29
NspI RCATGY 1 cut(s) 14
NspV TTCGAA 1 cut(s) 182
PauI GCGCGC 1 cut(s) 63
PciI ACATGT 1 cut(s) 10
PdmI GAANNNNTTC 1 cut(s) 188
PscI ACATGT 1 cut(s) 10
Psp6I CCWGG 1 cut(s) 234
PspGI CCWGG 1 cut(s) 234
PspN4I GGNNCC 1 cut(s) 29
PsuI RGATCY 2 cut(s) 127, 238
PteI GCGCGC 1 cut(s) 63
Sau3AI GATC 3 cut(s) 72, 127, 238
ScrFI CCNGG 1 cut(s) 236
SetI ASST 3 cut(s) 33, 105, 308
SfaNI GCATC 1 cut(s) 166
SfuI TTCGAA 1 cut(s) 182
Sse9I AATT 2 cut(s) 157, 297
SsiI CCGC 2 cut(s) 86, 246
StyD4I CCNGG 1 cut(s) 234
StyI CCWWGG 1 cut(s) 276
TaaI ACNGT 2 cut(s) 59, 217
TaiI ACGT 1 cut(s) 308
TaqI TCGA 3 cut(s) 42, 108, 182
TasI AATT 2 cut(s) 157, 297
TscAI CASTG 1 cut(s) 53
TspRI CASTG 1 cut(s) 53
XceI RCATGY 1 cut(s) 14
XcmI CCANNNNNNNNNTGG 1 cut(s) 283
XmnI GAANNNNTTC 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.