Rorug03G0222400

Somatic embryogenesis receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
N/A
Physical Location & Seq
Forward (+)
20251583 .. 20256567
4985 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0222400.1

Sequence Viewer

Length: 936 bp
ATGGAGAAGCCTAGCAGTAAGAGAACCACCGCCGGAGCCCTAGAAGAGAACATCTTGGCCAAAGCCGACGACACTCACTACGCCAACGACTACCGAACTGCTTTCCTCGATGCCGTTCGTGTTTGTGCCGCTTCGCTTGCTTGGTTGCCATTTGTTTTCAGCTCTGAAAGTTCTAGTAGCGAGAGGGAAGCTGCTAATAATCCTGGGGGATCAGTTGACTCCTCTGGTTTCCAATGTTTGATAGAAGACCGTACTGATGCAACTGCTGAACCAAACTTCCAACCCTCAGAAACAAAGTCCTTAGGGAACATGTTGCTGTTTCAATACCTAGTTAACGCTCTTGAAGGAGATTTTCAACCTTGCAACTGTATCTATGCAGAAACTGCAAACTGGGTCCTTCTGAGAGTCTTTGCTCAACATGCTTTTGAATATTTATATCATGATGCTTACTCAAACTTAAATTATCTTTTGAAGGTATCAAGAAAGATAAACTACAAAAACTTGATGAAGGATTGGTTGGCCATTATGTGTAAGCCGTATCAAACCAATGCTGGATTCACTGATGATCTGATAAGTTCAGAGAAGTTTATGGCACAACCAGCTGAAAATTTTGATACTGCTGCTACAATTGCTTTGCTTCAGATAGGAAAGAATACCTGTATAGCCATGCAGAAGTTTCTGATAATGATTATGGAGCTTGACTTGTCGAAGAAGACAGCAGAAATGCAAGGGTCTACTACAAGAGCAGATGGTGTCAGAACTCCTCTGCTGGAGATAGTTCTGGATGAGCTAACTTTCGATAAGGATATTCTTGACTCATTTCTTCAGGAAAATGGAGATTTTGCCACTTGGAAAAGAAGCATTGTTTATGGCAGCTGCTATCATATCAGTTCAGTCATAGTATGCCAAAGGTTGGGTGCATATAGCATCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007030 GO:0007049 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009556 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009838 GO:0009908 GO:0009987 GO:0010033 GO:0010152 GO:0010154 GO:0010227 GO:0010256 GO:0012505 GO:0014070 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019953 GO:0021700 GO:0022402 GO:0022414 GO:0023052 GO:0031984 GO:0032501 GO:0032502 GO:0032870 GO:0033612 GO:0033993 GO:0034293 GO:0036211 GO:0038023 GO:0042175 GO:0042221 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043401 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0046777 GO:0048229 GO:0048236 GO:0048316 GO:0048367 GO:0048437 GO:0048545 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051321 GO:0051704 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0071944 GO:0090567 GO:0098827 GO:0099402 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1903046
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8

Protein Analysis

311

Amino Acids

34.82

Weight (kDa)

4.84

Isoelectric Point (pI)

36.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 913
AccI GTMKAC 1 cut(s) 734
AciI CCGC 2 cut(s) 30, 129
AclWI GGATC 1 cut(s) 217
AcoI YGGCCR 2 cut(s) 57, 519
AcsI RAATTY 1 cut(s) 607
AcuI CTGAAG 2 cut(s) 623, 809
AfaI GTAC 1 cut(s) 253
AfiI CCNNNNNNNGG 1 cut(s) 913
AflIII ACRYGT 1 cut(s) 309
AgsI TTSAA 5 cut(s) 323, 344, 356, 428, 472
AjnI CCWGG 1 cut(s) 202
AjuI GAANNNNNNNTTGG 4 cut(s) 500, 532, 539, 571
AloI GAACNNNNNNTCC 2 cut(s) 261, 293
AluBI AGCT 6 cut(s) 162, 191, 602, 697, 790, 876
AluI AGCT 6 cut(s) 162, 191, 602, 697, 790, 876
AlwI GGATC 1 cut(s) 217
AlwNI CAGNNNCTG 1 cut(s) 383
AoxI GGCC 2 cut(s) 57, 519
ApeKI GCWGC 4 cut(s) 191, 620, 873, 876
ApoI RAATTY 1 cut(s) 607
AspS9I GGNCC 1 cut(s) 394
AvaII GGWCC 1 cut(s) 394
AxyI CCTNAGG 1 cut(s) 301
BalI TGGCCA 2 cut(s) 59, 521
BanII GRGCYC 1 cut(s) 40
BbsI GAAGAC 2 cut(s) 252, 719
BbvI GCAGC 4 cut(s) 178, 607, 863, 885
BccI CCATC 1 cut(s) 743
BceAI ACGGC 2 cut(s) 98, 520
BciT130I CCWGG 1 cut(s) 204
BfaI CTAG 4 cut(s) 12, 41, 174, 329
BisI GCNGC 5 cut(s) 129, 192, 621, 874, 877
BlsI GCNGC 5 cut(s) 130, 193, 622, 875, 878
Bme1390I CCNGG 1 cut(s) 204
Bme18I GGWCC 1 cut(s) 394
BmgT120I GGNCC 1 cut(s) 394
BmiI GGNNCC 2 cut(s) 37, 395
BmrFI CCNGG 1 cut(s) 204
BmrI ACTGGG 1 cut(s) 400
BmsI GCATC 3 cut(s) 100, 247, 433
BmuI ACTGGG 1 cut(s) 400
BpiI GAAGAC 2 cut(s) 252, 719
BpmI CTGGAG 1 cut(s) 791
BsaJI CCNNGG 1 cut(s) 203
Bsc4I CCNNNNNNNGG 1 cut(s) 913
Bse1I ACTGG 1 cut(s) 395
Bse21I CCTNAGG 1 cut(s) 301
BseBI CCWGG 1 cut(s) 204
BseDI CCNNGG 1 cut(s) 203
BseGI GGATG 1 cut(s) 790
BseLI CCNNNNNNNGG 1 cut(s) 913
BseMII CTCAG 2 cut(s) 300, 392
BseNI ACTGG 1 cut(s) 395
BseRI GAGGAG 2 cut(s) 211, 753
BseXI GCAGC 4 cut(s) 178, 607, 863, 885
BshFI GGCC 2 cut(s) 59, 521
BsiSI CCGG 1 cut(s) 33
BslI CCNNNNNNNGG 1 cut(s) 913
BsnI GGCC 2 cut(s) 59, 521
Bsp1286I GDGCHC 1 cut(s) 40
Bsp143I GATC 2 cut(s) 209, 565
BspACI CCGC 2 cut(s) 30, 129
BspANI GGCC 2 cut(s) 59, 521
BspCNI CTCAG 2 cut(s) 299, 393
BspHI TCATGA 1 cut(s) 439
BspLI GGNNCC 2 cut(s) 37, 395
BspPI GGATC 1 cut(s) 217
BsrI ACTGG 1 cut(s) 395
BssECI CCNNGG 1 cut(s) 203
BssMI GATC 2 cut(s) 209, 565
Bst2UI CCWGG 1 cut(s) 204
Bst4CI ACNGT 2 cut(s) 251, 368
Bst6I CTCTTC 1 cut(s) 39
BstAPI GCANNNNNTGC 1 cut(s) 383
BstC8I GCNNGC 1 cut(s) 138
BstDEI CTNAG 3 cut(s) 286, 301, 401
BstF5I GGATG 1 cut(s) 790
BstKTI GATC 2 cut(s) 212, 568
BstMBI GATC 2 cut(s) 209, 565
BstMWI GCNNNNNNNGC 5 cut(s) 137, 383, 419, 599, 629
BstNI CCWGG 1 cut(s) 204
BstNSI RCATGY 2 cut(s) 313, 422
BstSCI CCNGG 1 cut(s) 202
BstV1I GCAGC 4 cut(s) 178, 607, 863, 885
BstV2I GAAGAC 2 cut(s) 252, 719
Bsu36I CCTNAGG 1 cut(s) 301
BsuRI GGCC 2 cut(s) 59, 521
BtsCI GGATG 1 cut(s) 790
BtsIMutI CAGTG 1 cut(s) 558
Cac8I GCNNGC 1 cut(s) 138
CaiI CAGNNNCTG 1 cut(s) 383
CciI TCATGA 1 cut(s) 439
Cfr13I GGNCC 1 cut(s) 394
Csp6I GTAC 1 cut(s) 252
CviAII CATG 4 cut(s) 310, 419, 440, 667
CviQI GTAC 1 cut(s) 252
DdeI CTNAG 3 cut(s) 286, 301, 401
DpnI GATC 2 cut(s) 211, 567
DpnII GATC 2 cut(s) 209, 565
EaeI YGGCCR 2 cut(s) 57, 519
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
Eco24I GRGCYC 1 cut(s) 40
Eco47I GGWCC 1 cut(s) 394
Eco57I CTGAAG 2 cut(s) 623, 809
Eco81I CCTNAGG 1 cut(s) 301
EcoO109I RGGNCCY 1 cut(s) 394
EcoRII CCWGG 1 cut(s) 202
EcoT38I GRGCYC 1 cut(s) 40
FaeI CATG 4 cut(s) 313, 422, 443, 670
FatI CATG 4 cut(s) 309, 418, 439, 666
FblI GTMKAC 1 cut(s) 734
Fnu4HI GCNGC 5 cut(s) 129, 192, 621, 874, 877
FokI GGATG 1 cut(s) 797
FriOI GRGCYC 1 cut(s) 40
Fsp4HI GCNGC 5 cut(s) 129, 192, 621, 874, 877
FspBI CTAG 4 cut(s) 12, 41, 174, 329
GluI GCNGC 5 cut(s) 129, 192, 621, 874, 877
GsuI CTGGAG 1 cut(s) 791
HaeIII GGCC 2 cut(s) 59, 521
HapII CCGG 1 cut(s) 33
Hin1II CATG 4 cut(s) 313, 422, 443, 670
HincII GTYRAC 2 cut(s) 217, 334
HindII GTYRAC 2 cut(s) 217, 334
HinfI GANTC 4 cut(s) 218, 405, 555, 815
HpaI GTTAAC 1 cut(s) 334
HpaII CCGG 1 cut(s) 33
Hpy166II GTNNAC 3 cut(s) 217, 334, 735
Hpy188I TCNGA 8 cut(s) 166, 289, 402, 570, 580, 642, 681, 758
Hpy188III TCNNGA 6 cut(s) 341, 440, 480, 782, 812, 827
Hpy8I GTNNAC 3 cut(s) 217, 334, 735
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 4 cut(s) 338, 407, 466, 502
HpyCH4III ACNGT 2 cut(s) 251, 368
HpyCH4V TGCA 7 cut(s) 260, 363, 377, 386, 670, 727, 920
HpyF10VI GCNNNNNNNGC 5 cut(s) 137, 383, 419, 599, 629
HpyF3I CTNAG 3 cut(s) 286, 301, 401
Hsp92II CATG 4 cut(s) 313, 422, 443, 670
KspAI GTTAAC 1 cut(s) 334
Kzo9I GATC 2 cut(s) 209, 565
LmnI GCTCC 2 cut(s) 35, 694
Lsp1109I GCAGC 4 cut(s) 178, 607, 863, 885
LweI GCATC 3 cut(s) 100, 247, 433
MaeI CTAG 4 cut(s) 12, 41, 174, 329
MalI GATC 2 cut(s) 211, 567
MboI GATC 2 cut(s) 209, 565
MboII GAAGA 5 cut(s) 56, 257, 721, 724, 815
MfeI CAATTG 1 cut(s) 627
MhlI GDGCHC 1 cut(s) 40
MlsI TGGCCA 2 cut(s) 59, 521
MluCI AATT 3 cut(s) 460, 607, 627
MluNI TGGCCA 2 cut(s) 59, 521
MlyI GAGTC 3 cut(s) 212, 414, 809
MmeI TCCRAC 1 cut(s) 304
MnlI CCTC 5 cut(s) 116, 177, 232, 295, 774
Mox20I TGGCCA 2 cut(s) 59, 521
MscI TGGCCA 2 cut(s) 59, 521
MseI TTAA 2 cut(s) 333, 458
Msp20I TGGCCA 2 cut(s) 59, 521
MspA1I CMGCKG 2 cut(s) 602, 876
MspI CCGG 1 cut(s) 33
MspR9I CCNGG 1 cut(s) 204
MunI CAATTG 1 cut(s) 627
MvaI CCWGG 1 cut(s) 204
MwoI GCNNNNNNNGC 5 cut(s) 137, 383, 419, 599, 629
NdeII GATC 2 cut(s) 209, 565
NlaIII CATG 4 cut(s) 313, 422, 443, 670
NlaIV GGNNCC 2 cut(s) 37, 395
NspI RCATGY 2 cut(s) 313, 422
PagI TCATGA 1 cut(s) 439
PciI ACATGT 1 cut(s) 309
PfeI GAWTC 1 cut(s) 555
PflMI CCANNNNNTGG 1 cut(s) 913
PkrI GCNGC 5 cut(s) 130, 193, 622, 875, 878
PleI GAGTC 3 cut(s) 212, 413, 809
PpsI GAGTC 3 cut(s) 212, 413, 809
PpuMI RGGWCCY 1 cut(s) 394
PscI ACATGT 1 cut(s) 309
Psp5II RGGWCCY 1 cut(s) 394
Psp6I CCWGG 1 cut(s) 202
PspGI CCWGG 1 cut(s) 202
PspN4I GGNNCC 2 cut(s) 37, 395
PspPI GGNCC 1 cut(s) 394
PspPPI RGGWCCY 1 cut(s) 394
PstNI CAGNNNCTG 1 cut(s) 383
PvuII CAGCTG 2 cut(s) 602, 876
RsaI GTAC 1 cut(s) 253
RsaNI GTAC 1 cut(s) 252
SaqAI TTAA 2 cut(s) 333, 458
SatI GCNGC 5 cut(s) 129, 192, 621, 874, 877
Sau3AI GATC 2 cut(s) 209, 565
Sau96I GGNCC 1 cut(s) 394
SchI GAGTC 3 cut(s) 212, 414, 809
ScrFI CCNGG 1 cut(s) 204
SduI GDGCHC 1 cut(s) 40
SfaNI GCATC 3 cut(s) 100, 247, 433
SinI GGWCC 1 cut(s) 394
Sse9I AATT 3 cut(s) 460, 607, 627
SsiI CCGC 2 cut(s) 30, 129
SspI AATATT 1 cut(s) 431
SspMI CTAG 4 cut(s) 12, 41, 174, 329
StyD4I CCNGG 1 cut(s) 202
TaaI ACNGT 2 cut(s) 251, 368
TaqI TCGA 3 cut(s) 108, 707, 798
TasI AATT 3 cut(s) 460, 607, 627
TauI GCSGC 1 cut(s) 131
TfiI GAWTC 1 cut(s) 555
Tru1I TTAA 2 cut(s) 333, 458
Tru9I TTAA 2 cut(s) 333, 458
TscAI CASTG 1 cut(s) 565
TseI GCWGC 4 cut(s) 191, 620, 873, 876
TspDTI ATGAA 1 cut(s) 521
TspRI CASTG 1 cut(s) 565
Van91I CCANNNNNTGG 1 cut(s) 913
VpaK11BI GGWCC 1 cut(s) 394
XapI RAATTY 1 cut(s) 607
XceI RCATGY 2 cut(s) 313, 422
XmiI GTMKAC 1 cut(s) 734
XspI CTAG 4 cut(s) 12, 41, 174, 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.